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AFNI program -help files

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AFNI program -help files

Results of running each program with the -help option
*All -help Files on One VERY Long Page*       *Common options for most AFNI programs*

*Interactive AFNI Help (afni -help)*       *Unix Environment Variables and AFNI*

*Detailed History of AFNI software changes*

Links in the Table Below are to Individual -help Files
1dFlagMotion 1dMarry 1dSEM 1dTsort
1dUpsample 1dcat 1ddot 1deval
1dfft 1dgrayplot 1dmatcalc 1dnorm
1dplot 1dsum 1dsvd 1dtranspose
24swap 2dImReg 2swap 3dAFNIto3D
3dAFNItoANALYZE 3dAFNItoMINC 3dAFNItoNIFTI 3dAFNItoNIML
3dAFNItoRaw 3dANALYZEtoAFNI 3dANOVA 3dANOVA2
3dANOVA3 3dAcost 3dAllineate 3dAnatNudge
3dAnhist 3dAttribute 3dAutoTcorrelate 3dAutobox
3dAutomask 3dBRAIN_VOYAGERtoAFNI 3dBlurToFWHM 3dBrickStat
3dCM 3dCRUISEtoAFNI 3dClipLevel 3dConvolve
3dDFT 3dDTeig 3dDWItoDT 3dDeconvolve
3dDeconvolve_f 3dDespike 3dDetrend 3dEmpty
3dEntropy 3dErrtsCormat 3dExtrema 3dFDR
3dFWHM 3dFWHMx 3dFourier 3dFriedman
3dGetrow 3dIntracranial 3dInvFMRI 3dKruskalWallis
3dLRflip 3dLocalBistat 3dLocalCormat 3dLocalSVD
3dLocalstat 3dMINCtoAFNI 3dMannWhitney 3dMean
3dMedianFilter 3dNLfim 3dNotes 3dOverlap
3dPAR2AFNI.pl 3dREMLfit 3dROIstats 3dRegAna
3dRowFillin 3dSkullStrip 3dStatClust 3dSurf2Vol
3dSurfMask 3dSurfMaskDump 3dSynthesize 3dTSgen
3dTagalign 3dTcat 3dTcorrMap 3dTcorrelate
3dTfitter 3dThreetoRGB 3dToutcount 3dTqual
3dTshift 3dTsmooth 3dTsort 3dTstat
3dTwotoComplex 3dUndump 3dUniformize 3dUpsample
3dVol2Surf 3dWarp 3dWarpDrive 3dWavelets
3dWilcoxon 3dWinsor 3dZcat 3dZcutup
3dZeropad 3dZregrid 3danisosmooth 3daxialize
3dbuc2fim 3dbucket 3dcalc 3dclust
3dcopy 3ddelay 3ddot 3ddup
3dedge3 3dfim 3dfim+ 3dfractionize
3dhistog 3dinfo 3dmaskave 3dmaskdump
3dmatcalc 3dmatmult 3dmaxima 3dmerge
3dnewid 3dnoise 3dnvals 3dpc
3dproject 3drefit 3drename 3dresample
3dretroicor 3drotate 3dsvm 3dttest
3dvolreg 4swap @4Daverage @AddEdge
@AfniOrient2RAImap @Align_Centers @Center_Distance @CheckForAfniDset
@CommandGlobb @DO.examples @DTI_studio_reposition @DoPerRoi.py
@FromRAI @GetAfniBin @GetAfniDims @GetAfniID
@GetAfniOrient @GetAfniPrefix @GetAfniRes @GetAfniView
@IsoMasks @NoExt @NoisySkullStrip @Purify_1D
@RenamePanga @SUMA_AlignToExperiment @SUMA_FSvolToBRIK @SUMA_Make_Spec_Caret
@SUMA_Make_Spec_FS @SUMA_Make_Spec_SF @ScaleVolume @ShowDynamicRange
@Spharm.examples @SurfSmooth.HEAT_07.examples @TTxform_anat @ToRAI
@UpdateAfni @VolCenter @align_partial_oblique @auto_align
@auto_tlrc @clip_volume @fast_roi @fix_FSsphere
@float_fix @isOblique @make_stim_file @np
@parse_afni_name @parse_name @statauxcode AFNI.afnirc
AFNI_Batch_R AlphaSim AnalyzeTrace CompareSurfaces
ConvertDset ConvertSurface ConvexHull CreateIcosahedron
DTIStudioFibertoSegments Dimon DriveSuma FSread_annot
Ifile Imon IsoSurface MakeColorMap
MapIcosahedron ROI2dataset ROIgrow RSFgen
SampBias ScaleToMap SpharmDeco SpharmReco
Surf2VolCoord SurfClust SurfDist SurfDsetInfo
SurfInfo SurfMeasures SurfMesh SurfPatch
SurfQual SurfSmooth SurfToSurf SurfaceMetrics
Vecwarp Xphace abut adwarp
afni afni_history afni_proc.py afni_vcheck
aiv align_epi_anat.py byteorder cat_matvec
ccalc cdf cjpeg count
dicom_hdr dicom_to_raw djpeg ent16
fdrval file_tool float_scan from3d
ftosh ge_header gen_epi_review.py gifti_tool
gui_xmat.py im2niml imand imaver
imcalc imcat imcutup imdump
immask imreg imrotate imstack
imstat imupsam inspec lpc_align.py
make_random_timing.py make_stim_times.py mayo_analyze module_test_lib.py
mpegtoppm mritopgm neuro_deconvolve.py nifti1_test
nifti_stats nifti_tool nsize option_list.py
plugout_drive plugout_ijk plugout_tt python_module_test.py
quickspec rmz rotcom rtfeedme
serial_helper siemens_vision sqwave strblast
suma suma_change_spec timing_tool.py to3d
waver whereami whirlgif xmat_tool.py
README.Ifile README.atlas_building README.attributes README.bzip2
README.changes README.compression README.copyright README.driver
README.environment README.func_types README.notes README.permtest
README.plugouts README.realtime README.registration README.render_scripts
README.roi README.setup README.volreg README.web
README.ziad AFNI.changes.dglen AFNI.changes.rickr AFNI.afnirc
AFNI.Xdefaults
This page auto-generated on Fri Jan 30 20:02:53 EST 2009 — RWCox

Created by Robert Cox
Last modified 2009-01-30 20:02
latest compile date
30 Jan 2009 18:56 EST
latest afni version
AFNI_2008_07_18_1710
 
 
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