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Year 2008 | Back to top |
A Balanced Approach to Health Information Evaluation: A Vocabulary-based Naive Bayes Classifier and Readability Formulas |
Leroy G, Miller T, Rosemblat G, Browne A
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In Journal of the American Society for Information Science and Technology (JASIST), 59(9):1409-1419, 2008 |
(Abstract) |
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Accessing and Integrating Data and Knowledge for Biomedical Research |
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Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):91-99 |
(Abstract) (PDF)
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A Framework for Characterizing Drug Information Sources |
Sharp M, Bodenreider O, Wacholder N
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AMIA Annu Symp Proc 2008:662-666 |
(Abstract) |
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An Ontology-driven Semantic Mash-up of Gene and Biological pathway information: Application to the domain of nicotine dependence |
Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP
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Journal of Biomedical Informatics 2008 |
(Abstract) |
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Auditing the NCI Thesaurus with Semantic Web Technologies |
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Auditing the NCI thesaurus with Semantic Web technologies |
(Abstract) (PDF)
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Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System |
Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P
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Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008). Berlin Heidelberg New York: Springer; 2008. p. 61-76 |
(Abstract) (PDF)
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Beyond Surface Characteristics: A New Health Text-specific Readability Measurement |
Kim H, Goryachev S, Rosemblat G, Browne A, Keselman A, Zeng-Treitler Q
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AMIA Annu Symp Proc. 2007 Oct 11:418-22 |
(Abstract) |
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Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support |
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Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):67-79 |
(Abstract) |
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Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies |
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Proc. KR-MED 2008 |
(Abstract) |
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Design and Implementation of a Personal Medication Record - MyMedicationList |
Zeng K, Bodenreider O, Nelson SJ
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AMIA Annu Symp Proc 2008:844-848 |
(Abstract) (PDF)
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Essie: a concept-based search engine for structured biomedical text |
Ide NC, Loane RF, Demner-Fushman D
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J Am Med Inform Assoc. 2007 May-Jun;14(3):253-63. Epub 2007 Feb 28 |
(Abstract) |
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Identifying Risk Factors for Metabolic Syndrome in Biomedical Text |
Fiszman M, Rosemblat G, AhlersCB, Rindflesch TC
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AMIA Annu Symp Proc. 2007 Oct 11:249-53 |
(Abstract) |
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Issues in Mapping LOINC Laboratory Tests to SNOMED CT |
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AMIA Annu Symp Proc 2008:51-55 |
(Abstract) |
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Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science |
Hurdle JF, Botkin J, Rindflesch TC
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AMIA Annu Symp Proc. 2007 Oct 11:349-53 |
(Abstract) |
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Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing |
Aronson AR, Mork JG, Shooshan SE, Demner-Fushman D
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AMIA Annu Symp Proc. 2008 Nov 6:21-5 |
(Abstract) |
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Moving Towards Transparency of Clinical trials |
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Science. 2008 Mar 7;319(5868):1340-2 |
(Abstract) |
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MyMedicationList: Integrating Personal Medication Records with Resources |
Nelson SJ, Zeng K, Bodenreider O
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AMIA Annu Symp Proc 2008:1228 |
(Abstract) (PDF)
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Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues |
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In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4 |
(Abstract) (PDF)
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Semantic Processing to Support Clinical Guideline Development |
Fiszman M, Ortiz E, Bray BE, Rindflesch TC
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AMIA Annu Symp Proc. 2008 Nov 6:187-91 |
(Abstract) |
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Semantic Web for Translational Biomedicine: Two Pilot Experiments |
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Proc. MIA Summit on Translational Bioinformatics 2008:141 |
(Abstract) (PDF)
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SNOMED CT: Browsing the Browsers |
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Proc of the Third International Conference on Knowledge Representation in Medicine (KR-MED 2008) 2008:30-36 |
(Abstract) |
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Standards, Security and Usability: Experience with MyMedicationList |
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
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Proc. AMIA Spring Congress 2008 |
(PDF)
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The Biological Function of Some Human Transcription Factor Binding Motifs Varies with Position Relative to the Transcription Start Site |
Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Marino-Ramirez
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Nucleic Acids Res 2008;36(8):2777-2786 |
(Abstract) |
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Toward Automatic Recognition of High Quality Clinical Evidence. |
Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB
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AMIA Annu Symp Proc. 2008 Nov 6:368 |
(Abstract) |
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Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence |
Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB
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J Am Med Inform Assoc. 2009 Jan-Feb;16(1):25-31. Epub 2008 Oct 24 |
(Abstract) |
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Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms |
Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC
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AMIA Annu Symp Proc. 2007 Oct 11:6-10 |
(Abstract) |
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Using the RxNorm Web Services API for Quality Assurance Purposes |
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AMIA Annu Symp Proc 2008:591-595 |
(Abstract) |
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Year 2007 | Back to top |
Advancing Translational Research with the Semantic Web |
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, et al
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BMC Bioinformatics 2007;8(Suppl 3):S2. |
(Abstract) (PDF)
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Aligning Anatomical Ontologies: The Role of Complex Structural Rules |
Zhang S, Bodenreider O, Kantz N
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IIAS-Transactions on Systems Research and Cybernetics - Proceedings of the 18th International Conference on Systems Research, Informatics and Cybernetics (InterSymp 2006) 2006;VI(2):27-32. |
(Abstract) (PDF)
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A Multidiscipline Conceptual Framework for Consumer Health Informatics |
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Medinfo 2007 12 (Pt2):1169-1173. |
(Abstract) (PDF)
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An Experiment in Integrationg Large Biomedical Knowledge Resources with RDF: Application to Associating Genotype and Phenotype Information |
Sahoo S, Bodenreider O, Zeng K, Sheth AP
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Proceedings of the workshop on Health Care and Life Sciences Data Integration for the Semantic Web at the 16th International World Wide Web Conference (WWW2007) (electronic proceedings: http://www2007.org/workshops/paper_149.pdf) |
(Abstract) (PDF)
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Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study |
Keselman A, Tse T, Crowell J et al
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J Med Internet Res. 2007 Mar 14;9(1):e5 |
(Abstract) (PDF)
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Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations |
Neveol A, Mork JG, Aronson R
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Proc BioNLP 2007 Workshop, 183-92. |
(Abstract) (PDF)
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Clinical, Classroom or Personal Education: Attitudes About Health Literacy |
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JMLA 95:2 (April 2007): 127-137. |
(Abstract) (PDF)
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Clinical Ontologies for Discovery Applications |
Lussier YA, Bodenreider O
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In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119. |
(Abstract) (PDF)
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Co-evolutionary Rates of Functionally Related Yeast Genes |
Marino-Ramirez L, Bodenreider O, Kantz N, Jordan IK
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Evolutionary Bioinformatics Online 2006;2:295-300. |
(Abstract) (PDF)
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Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS |
Fung KW, Bodenreider O, Aronson AR, Hole WT, Srinivasan S
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Medinfo 2007:605-609. |
(Abstract) (PDF)
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Combining Resources to Find Answers to Biomedical Questions |
Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, et al
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Proc TREC 2007, 205-14 |
(Abstract) (PDF)
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Comparing Two Approaches for Aligning Representations of Anatomy |
Zheng S, Mork P, Bodenreider O, Bernstein PA
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Artificial Intelligence in Medicine 2007;39(3):227-236. |
(Abstract) (PDF)
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Essie: A Concept-based Search Engine for Structured BiomedicalText |
Ide NC, Loane RF, Demner-Fushman D
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J Am Med Inform Assoc 2007;14(3):253-263. |
(Abstract) (PDF)
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Experience in Aligning Anatomical Ontologies |
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International Journal on Semantic Web and Information Systems 2007;3(2):1-26. |
(Abstract) (PDF)
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Experience in Integrating Large RDF-based Biomedical Knowledge Resources with Oracle |
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Proceedings of the 8th International Oracle Life Sciences User Group Meeting 2007:(electronic proceedings: http://www.olsug.org/wiki/images/d/d1/Kelly_Zheng.pdf) |
(Abstract) (PDF)
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Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics |
Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC
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Pacific Symposium on Biocomputing 2007 12:209-220 |
(Abstract) (PDF)
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Extractive Summarization in Clinical Trials Protocol Summaries: A Case Study |
Rosemblat G, Graham L, Tse T
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In: Proceedings, 3rd Indian International Conference on Artificial Intelligence (IICAI-2007), pp. 1824-1837 |
(Abstract) (PDF)
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Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool |
Neveol A, Shooshan SE, Mork JG, Aronson AR
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AMIA Annu Symp Proc. 2007;:553-7 |
(Abstract) (PDF)
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From 'Glycosyltransferase' to 'Congenital Muscular Dystrophy': Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology |
Sahoo SS, Zeng K, Bodenreider O, Sheth A
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MEDINFO 2007:1260-1264 |
(Abstract) (PDF)
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From Indexing the Biomedical Literature to Coding Clinical Text: Experience with MTI and Machine Learning Approaches |
Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Neveol A, Peters L, Rogers WJ
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Proc. 2007 Workshop on Biomedical Natural Language Processing (BioNL'07), June 2007, pp. 105-112, Prague, Czech Republic. |
(Abstract) (PDF)
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Hybrid Alignment Strategy for Anatomical Ontologies Results of the 2007 Ontology Alignment Contest |
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Proc. OAEI 2007:139-149. |
(Abstract) (PDF)
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Identifying Mismatches in Alignments of Large Anatomical Ontologies |
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Proc AMIA Annu Symp; 2007:851-855 |
(Abstract) (PDF)
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Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository |
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Proc AMIA Annu Symp; 2007:1170 |
(Abstract) (PDF)
|
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Interpreting Comparative Constructons in Biomedical Text |
Fiszman M, Demner-Fushman D, Lang FM, Goetz P, Rindflesch TC
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Proc. 2007 Workshop on Biomedical Natural Language Processing (BioNL'07), June 2007, pp. 137-144, Prague, Czech Republic. |
(Abstract) (PDF)
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Investigating Subsumption in SNOMED CT: An Exploration into Large Description Logic-based Biomedical Terminologies |
Bodenreider O, Smith B, Kumar A, Burgun A
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Artificial Intelligence in Medicine 2007;39(3):183-195. |
(Abstract) (PDF)
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Issues in Integrating Epidemiology and Research Information in Oncology: Experience with ICD-O3 and the NCI Thesaurus |
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Proc AMIA Annu Symp; 2007:pp 85-89. |
(Abstract) (PDF)
|
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Issues in the Registration of Clinical Trials |
Zarin DA, Ide NC, Tse T, Harlan WR, West JC, Lindberg DAB
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JAMA 2007:297(19):2112-2120. |
(Abstract) (PDF)
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Keeping the Promises Associated with Your Digital Assets: Is it Possible? |
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In: Archiving 2007 Final Program and Proceedings, pp.146-149, 2007. |
(Abstract) (PDF)
|
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Knowledge-Based Methods to Help Clinicians Find Answers in MEDLINE |
Sneiderman CA, Demner-Fushman D, Fiszman M, Ide NC, Rindflesch TC
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2007 Nov-Dec;14(6):772-80. Epub 2007 Aug 21 |
(Abstract) (PDF)
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Lessons Learned from Cross-Validating Alignments Between Large Anatomical Ontologies |
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MEDINFO 2007:822-826. |
(Abstract) (PDF)
|
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Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature |
Neveol A, Shooshan SE, Humphrey SM, Rindflesch TC, Aronson AR
|
Pacific Symposium on Biocomputing 2007 12:293-303 |
(Abstract) (PDF)
|
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Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration |
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Proc. of the APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007 2007:Abstract 342. |
(Abstract) (PDF)
|
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PDF File Migration to PDF/A: Technical Considerations |
Walker FL, Gallagher ME, Thoma GR
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Proc. IS&T Archiving 2007. Arlington, Virginia, May 2007; 6-11. |
(Abstract) (PDF)
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Registering a Clinical Trial in ClinicalTrials.gov |
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Chest 2007;131;909-912; Prepublished online February 15, 2007; DOI10.1378/chest.06-2450 |
(Abstract) (PDF)
|
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RxNav: An Integrated View on Drug Information |
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
|
Proc AMIA Annu Symp; 2007:1202 |
(Abstract) (PDF)
|
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RxNav: Towards an Integrated View on Drug Information |
Zeng K, Bodenreider O, Kilbourne J, Nelson S
|
MEDINFO 2007:386. |
(Abstract) (PDF)
|
|
Term Identification Methods for Consumer Health Vocabulary Development |
Zeng QT, Tse T, Divita G et al
|
J Med Internet Res. 2007 Feb 28;9(1):e4 |
(Abstract) (PDF)
|
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The Consumers' Perspective: Text Features and Readability of Consumer Health Text |
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Mednet 2007: Germany. 12 Oct 2007. |
(Abstract) |
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Using Discourse Analysis to Improve Text Categorization in MEDLINE |
Ruch P, Geissbuhler A, Gobeill J, Lisacek F, Tbahriti I, Veuthey A, Aronson AR
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Medinfo 2007:710-715. |
(Abstract) (PDF)
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Year 2006 | Back to top |
A Pragmatic Approach to Summary Extraction in Clinical Trials |
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In Proceedings of the BioNLP Workshop on Linking Natural Language Processing and Biology at HLT-NAACL 06, pages 124-125, New York City, June 2006. |
(Abstract) (PDF)
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Argumentative Feedback: A Linguistically-motivated Term Expansion for Information Retrieval |
Ruch P, Tbahriti I, Bobeill J, Aronson AR
|
Proc. COLING/ACL 2006, 675-82 |
(Abstract) (PDF)
|
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Argument-predicate Distance as a Filter for Enhancing Precision in Extracting Predications on the Genetic Etiology of Disease |
Masseroli M, Kilicoglu H, Lang F-M, Loane RF, Rindflesch TC
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BMC Bioinformatics 2006; 7:291 |
(Abstract) (PDF)
|
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Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study |
Keselman A, Tse T, Crowell J, Browne A, Ngo L, Zeng Q
|
Mednet 2006 |
(Abstract) (PDF)
|
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Besides Precision and Recall: Exploring Alternative Approaches to Evaluating an Automatic Indexing Tool for MEDLINE |
Neveol A, Zeng K, Bodenreider O
|
Proc AMIA Symp 2006:589-593 |
(Abstract) (PDF)
|
|
Bio-ontologies: Current Trends and Future Directions |
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Briefings in Bioinformatics 2006;7(3):256-274 |
(Abstract) (PDF)
|
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Challenges and Strategies of the Genetics Home Reference |
Mitchell JA, Fomous C, Fun J
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Journal of Web Semantics: Science, Services and Agents on the World Wide Web 2006;4(3):181-195. |
(Abstract) (PDF)
|
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Comparing the Representation of Anatomy in the FMA and SNOMED CT |
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Proc AMIA Symp 2006:46-50 |
(Abstract) (PDF)
|
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Comparing Two Approaches to Eliminating Cycles in Terminological Systems |
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Proceedings of the 15th conference on Pattern Recognition and Artificial Intelligence (RFIA 2006)(electronic proceedings) |
(Abstract) (PDF)
|
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Cross-Language Search in a Monolingual Health Information System: Flexible Designs and Lexical Processes |
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In Proceedings of the 9th ISKO Conference, pages 173-182, Vienna, Austria, July 2006. |
(Abstract) (PDF)
|
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Data Integration Through Data Elements: Mapping Data Elements to Terminological Resources |
Mougin F, Burgun A, Bodenreider O
|
Proceedings of the Second Interntional Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:52-59 |
(Abstract) (PDF)
|
|
dTagger: A POS Tagger |
Divita G, Browne AC, Loanne R
|
AMIA 2006 Symposium Proceedings pp 201-203 |
(Abstract) (PDF)
|
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Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches |
Bodenreider O, Peters L, McCray A
|
Proc AMIA Symp 2006:804-808 |
(Abstract) (PDF)
|
|
Experience in Reasoning with the Foundational Model of Anatomy in OWL DL |
Zhang S, Bodenreider O, Golbreich C
|
In: Altman RB, Dunker AK, Hunter L, Murray TA, Klein TE, editors. Pacific Symposium on Biocomputing 2006: World Scientific; 2006. p. 200-211. |
(Abstract) (PDF)
|
|
Exploiting Semantic Relations for Literature-Based Discovery |
Hristovski D, Friedman C, Rindflesch TC
|
AMIA Annu Symp Proc. 2006; 349-53 |
(Abstract) (PDF)
|
|
Exploring and Developing Consumer Health Vocabularies |
|
Journal of the American Medical Informatics Association. 2006 Jan/Feb;(1)24-9. |
(Abstract) (PDF)
|
|
Exploring User Navigation during Online Health Information Seeking |
Graham L, Tse T, Keselman A
|
Proc. AMIA 2006 |
(Abstract) (PDF)
|
|
Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort |
Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR
|
Proc TREC 2006, 569-76 |
(Abstract) (PDF)
|
|
Genetics Home Reference: Helping Patients Understand the Role of Genetics in Health and Disease |
Fomous C, Mitchell JA, McCray A
|
Community Genet 2006;9:274-278 |
(Abstract) (PDF)
|
|
Global Similarity and Local Divergence in Human and Mouse Gene Co-expression Networks |
Tsaparas P, Marino-Ramirez L, Bodenreider O
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BMC Evol Biol 2006;6(1):70 |
(Abstract) (PDF)
|
|
Information Rx: Evaluation of a New Informatics Tool for Physicians, Patients, and Libraries |
Siegel ER, Logan RA, Harnsberger RL, Cravedi K, Krause JA, Lyon B, Hajarian K, Uhl J, Ruffin A, Lindberg DA
|
Information Services and Use. 2006: 16(1): 1-10 |
(Abstract) (PDF)
|
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Interpretation of Data and Identification of Information are Sine Qua Non for Modern Digital Information Services |
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Proceedings of AMIA Symposium, 2006 |
(Abstract) (PDF)
|
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Law and Order: Assessing and Enforcing Compliance with Ontological Modeling Principles in the Foundational Model of Anatomy |
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Computers in Biology and Medicine 2006; 36(6-7):674-693 |
(Abstract) (PDF)
|
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Lexical, Terminological and Ontological Resources for Biological Text Mining |
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Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66. |
(Abstract) (PDF)
|
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Mapping Data Elements to Terminological Resources for Integrating Biomedical Data Sourcse |
Mougin F, Burgun A, Bodenreider O
|
BMC Bioinformatics 2006;7(Suppl 3):S6 |
(Abstract) (PDF)
|
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NLM Anatomical Ontology Alignment system: Results of the 2006 ontology alignment contest |
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Proceedings of the Ontology Alignment Evaluation Initiative 2006 Campaign (OAEI 2006) 2006:145-156 |
(Abstract) (PDF)
|
|
Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions |
Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A
|
In: Proceedings of IEEE International Conference on Data Mining (ICDM) 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119 |
(Abstract) (PDF)
|
|
RxNav: A Web Service for Standard Drug Information |
Zeng K, Bodenreider O, Kilbourne J, Nelson SJ
|
Proc AMIA Symp 2006:1198 |
(Abstract) (PDF)
|
|
Semantic Representation of Consumer Questions and Physician Answers |
Slaughter LA, Soergel D, Rindflesch TC
|
Int J Med Inform. 2006;75(7):513-29 |
(Abstract) (PDF)
|
|
Summarizing Drug Information in Medline Citations |
Fiszman M, Rindflesch TC, Kilicoglu H
|
AMIA Annu Symp Proc. 2006; 254-8 |
(Abstract) (PDF)
|
|
Surviving Change: The First Step Toward Sustaining Your Digital Library |
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J. Trant and D. Bearman (eds.). Museums and the Web 2006: Proceedings, Toronto: Archives and Museum Informatics, published 2006 Mar. |
(Abstract) (PDF)
|
|
Text Features and Readability: Expert Evaluation of Consumer Health Text |
Rosemblat G, Logan R, Tse T, Graham L
|
Mednet 2006: 11th World Congress on Internet in Medicine the Society for Internet in Medicine. October 14-16, 2006. Toronto, Canada. |
(Abstract) (PDF)
|
|
The Effect of User Factors on Consumer Familiarity with Health Terms: Using Gender as a Proxy for Background Knowledge about Gender-Specific Illnesses |
Keselman A, Massengale L, Ngo L, Browne A, Zeng Q
|
ISBMDA 2006: 472-481 |
(Abstract) (PDF)
|
|
The Foundational Model of Anatomy in OWL: Experience and Perspectives |
Golbreich C, Zhang S, Bodenreider O
|
Journal of Web Semantics: Science, Services and Agents on the World Wide Web 2006;4(3):181-195. |
(Abstract) (PDF)
|
|
The Role of the National Library of Medicine Web Sites in Newborn Screening Education |
|
Ment Retard Dev Disabil Res Rev. 2006;12(4):305-12 |
(Abstract) (PDF)
|
|
User Study of a Spanish-language ClinicalTrials.gov Prototype System |
|
To appear in Proceedings of the American Medical Informatics Association Annual Conference (AMIA 2006), Washington, DC, November 2006 pp 659-664. |
(Abstract) (PDF)
|
|
Using Dependence Relations in MeSH as a Framework for the Analysis of Disease Information in Medline |
|
Proceddings of the Second International Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:76-83 |
(Abstract) (PDF)
|
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Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration |
Mougin F, Burgun A, Bodenreider O
|
Proc AMIA Symp 2006:574-578. |
(Abstract) (PDF)
|
|
Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment |
Humphrey SM, Rogers WJ, Kilicoglu H, Demner-Fushman D, Rindflesch TC
|
Journal of the American Society for Information Science and Technology. 2006 Jan 1;57(1):96-113. |
(Abstract) (PDF)
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Year 2005 | Back to top |
A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications |
Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson L
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Proceedings of AMIA Symposium 2005: 21-5. |
(Abstract) (PDF)
|
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A Consumer Health Informatics (CHI) Toolbox: Challenges and Implications |
Bakker TA, Ryce AN, Logan RA, Tse T, Hutcherson LY
|
Proc. AMIA 2005: 21-25 |
(Abstract) (PDF)
|
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Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference |
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Proceedings of AMIA Annual Symposium 2005:864-868. |
(Abstract) (PDF)
|
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An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis |
Wang H, Azuaje F, Bodenreider O
|
Proceedings of the 18th IEEE International Symposium on Computer-Based Medical Systems 2005:389-394. |
(Abstract) (PDF)
|
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An ontology of chemical entities helps identify dependence relations among Gene Ontology terms |
|
Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM-2005) 2005. |
(Abstract) (PDF)
|
|
Approaches to Eliminating Cycles in the UMLS Metathesaurus: Naive vs. Formal |
|
Proceedings of AMIA Annual Symposium 2005:550-554. |
(Abstract) (PDF)
|
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Assessment of the National Library of Medicine's Health Disparities Plan: A Focus on Native American Outreach |
Siegel ER, Wood FB, Dutcher GA, Ruffin A, Logan RA, Scott J
|
Journal of the Medical Library Association. 93:4 (October 2005): 10-20 |
(Abstract) (PDF)
|
|
A Text Corpora-Based Estimation of the Familiarity of Health Terminology |
Zeng Q, Kin E, Crowell J, Tse T
|
VI International Symposium on Biological and Medical Data Analysis (ISBMDA), Aveiro, Portugal, 10-11 November 2005:184-92. |
(Abstract) (PDF)
|
|
A Web Application to Support Consumer Health Vocabulary Development |
Crowell J, Zeng QT, Tse T
|
Proceedings of AMIA Symposium Poster 2005: 932. |
(Abstract) (PDF)
|
|
Biomedical Ontologies |
|
In: Chen H, Fuller S, Jersh WR, Friedman C, editors. Medical Informatics: Advances in Knowledge Management and Data Mining in Biomedicine: Springer-Verlag; 2005. p. 211-236. |
(Abstract) (PDF)
|
|
Classifying diseases with respect to anatomy: a study in SNOMED CT |
Bergun A, Bodenreider O, Mougin F
|
Proceedings of AMIA Annual Symposium 2005:91-95. |
(Abstract) (PDF)
|
|
Determining Prominent Subdomains in Medicine |
Bernhardt PJ, Humphrey SM, Rindflesch TC
|
Proceedings of the AMIA Annual Symposium. 2005;:46-50. |
(Abstract) (PDF)
|
|
Effects of Information and Machine Learning Algorithms on Word Sense Disambiguation with Small Datasets |
|
International Journal of Medical Informatics. 2005 Aug;74(7-8):573-85. |
(Abstract) (PDF)
|
|
Enhancing Access to Patient Education Information: A Pilot Usability Study |
Beaudoin DE, Rocha RA, Tse T
|
Proceedings of AMIA Symposium Poster 2005:892. |
(Abstract) (PDF)
|
|
Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus |
Neveol A, Mork JG, Aronson AR, Darmoni SJ
|
AMIA Annu Symp Proc. 2005;:565-9 |
(Abstract) (PDF)
|
|
Fusion of Knowledge-intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents |
Aronson AR, Demner-Fushman D, Humphrey SM, Lin J, Liu H, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ
|
Proc TREC 2005, 36-45 |
(Abstract) (PDF)
|
|
GenesTrace: Phenomic Knowledge Discovery Via Structured Terminologies |
Cantor MN, Sarkar INK, Bodenreider O, Lussier YA
|
Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:103-114. |
(Abstract) (PDF)
|
|
Identifying Consumer-Friendly Display (CFD) Names for Health Concepts |
Zeng QT, Tse T, Crowell J, Divita G, Roth L, Browne AC
|
Proceedings of AMIA Symposium 2005: 859-63. |
(Abstract) (PDF)
|
|
Implementing RxNav, a RxNorm Browser |
Zeng K, Bodenreider O, Nelson SJ
|
Proceedings of Medical Informatics Europe 2005 (CD-ROM) 2005:1268. |
(Abstract) (PDF)
|
|
Issues in the Classification of Disease Instances with Ontologies |
Bergun A, Bodenreider O, Jacquelinet C
|
Stud Health Technol Inform 2005;116:695-700. |
(Abstract) (PDF)
|
|
Knowledge Integration for Bio-Threat Response |
Backer A, Bodenreider O, Karp P, Kelly H, Loranger S, Musen M, Sriram R, Wroe C
|
Los Alamos White Paper |
(Abstract) (PDF)
|
|
Linking the Gene Ontology to other biological ontologies |
|
Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:17-18. |
(Abstract) (PDF)
|
|
Medical Facts to Support Inferencing in Natural Language Processing |
Rindflesch TC, Pakhomov SV, Fiszman M, Kilicoglu H, Sanchex VR
|
Proceedings of the AMIA Annual Symposium. 2005;:634-38. |
(Abstract) (PDF)
|
|
MedPost: A Part of Speech Tagger for BioMedical Text |
Smith L, Rindflesch TC, Wilbure WJ
|
Bioinformatics. 2004 Sep 22;20(14):2320-1. |
(Abstract) (PDF)
|
|
MedTag: A Collection of Biomedical Annotations |
Smith L, Rindflesch TC, Wilbure WJ
|
Bioinformatics. 2004 Sep 22;20(14):2320-1. |
(Abstract) (PDF)
|
|
Migrating the FMA from Protege to OWL |
Golbreich C, Zhang S, Bodenreider O
|
Proceedings of the Eighth International Protege Conference 2005:108-111. |
(Abstract) (PDF)
|
|
Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology |
Bodenreider O, Aubry M, Burgun A
|
Pacific Symposium on Biocomputing 2005: World Scientific. 2005;:91-102. |
(Abstract) (PDF)
|
|
Of Mice and Men: Aligning Mouse and Human Anatomies |
Bodenreider O, Hayamizu TF, Ringwald M, De Coronado S, Zhang S
|
Proceedings of AMIA Annual Symposium 2005:61-65. |
(Abstract) (PDF)
|
|
Ontology-driven Similarity Approaches to Supporting Gene Functional Assessment |
Azuaje F, Wang H, Bodenreider O
|
Proceedings of the ISMB'2005 SIG meeting on Bio-ontologies 2005:9-10. |
(Abstract) (PDF)
|
|
RxNav: A Progress Report |
Zeng K, Bodenreider O, Nelson SJ
|
Proceedings of AMIA Annual Symposium 2005:1168. |
(Abstract) (PDF)
|
|
Semantic Characteristics of MEDLINE Citations Useful for Therapeutic Decision-making |
Sneiderman C, Demner-Fushman D, Fiszman M, Rindflesch TC
|
Proceedings of AMIA Annual Symposium, 2005;:1117. |
(Abstract) (PDF)
|
|
Semantic Interpretation for the Biomedical Research Literature |
Rindflesch TC, Fiszman M, Bisharah L
|
In Hsinchun C, Fuller S, Friedman C, Hersh w (eds.) Medical Informatics: Knowledge Management and Data Mining in Biomedicine. Springer: New York, pp. 399-422, 2005. |
(Abstract) (PDF)
|
|
Semantic Representation of Consumer Questions and Physician Answers |
Slaughter LA, Soergel D, Rindflesch TC
|
International Journal of Medical Informatics. August 23, 2005. |
(Abstract) (PDF)
|
|
Semi-Automatic Indexing of Full Text Biomedical Articles |
Gay CW, Kayaalp M, Aronson AR
|
AMIA Annu Symp Proc. 2005;:271-5 |
(Abstract) (PDF)
|
|
Supporting Access to Consumer Health Information Across Languages |
Rosemblat G, Tse T, Gemoets D, Gillen JE, Ide NC
|
Proceedings of the 9th World Congress on Health Information and Libraries (ICML-9), September 20-23, 2005; Salvador, Bahia, Brazil. |
(Abstract) (PDF)
|
|
The Foundational Model of Anatomy in OWL: experience and perspectives |
Golbreich C, Zhang S, Bodenreider O
|
Proceedings of the Workshop on OWL: Experiences and Directions 2005. |
(Abstract) (PDF)
|
|
The Importance of the Lexicon in Tagging Biological Text |
Smith LH, Rindflesch TC, Wilbur WJ
|
Natural Language Engineering 2005. |
(Abstract) (PDF)
|
|
The National Library of Medicine's Native American Outreach Portfolio: A Descriptive Overview |
Wood FB, Siegel ER, Dutcher GA, Ruffin A, Logan RA
|
Journal of the Medical Library Association. 93:4 (October 2005): 21-34 |
(Abstract) (PDF)
|
|
Trial Registration at ClinicalTrials.gov between May and October 2005 |
|
New England Journal of Medicine 2005 December 29,353(26):2779-87. |
(Abstract) (PDF)
|
|
Utilizing the UMLS for Semantic Mapping between Terminologies |
|
Proceedings of AMIA Annual Symposium 2005:266-270. |
(Abstract) (PDF)
|
|
Why Do We Need Probabilistic Approaches to Ontologies and the Associated Data? |
|
Proc AMIA Symposium 2005 |
(Abstract) (PDF)
|
|
|
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Year 2004 | Back to top |
Abstraction Summarization for Managing the Biomedical Research Literature |
Fiszman M, Rindflesch TC, Kilicoglu H
|
Proceedings of the HLT-NAACL Workshop on Computational Lexical Semantics. 2004;:76-83. |
(Abstract) (PDF)
|
|
Adapting A Monolingual Consumer Health System for Cross-Language Information Retrieval |
Rosemblat G, Tse T, Gemoets D
|
Advances in Knowledge Organization, Proceedings of the Eighth International ISKO Conference. 2004 July;9:315-321. |
(Abstract) (PDF)
|
|
Aligning Knowledge Sources in the UMLS: Methods, Quantitative Results, and Applications |
|
Medinfo. 2004 Sept.;2004:327-331. |
(Abstract) (PDF)
|
|
Application of a Medical Text Indexer to an Online Dermatology Atlas |
Kim GR , Aronson AR, Mork JG, Cohen BA, Lehmann CU
|
MedInfo. 2004 Sept.;2004:. |
(Abstract) (PDF)
|
|
Assessing Readability of Consumer Health Information: An Exploratory Study |
Gemoets D, Rosemblat G, Tse T, Logan R
|
Medinfo. 2004 Sept.;2004:869-73. |
(Abstract) (PDF)
|
|
Comparing Associative Relationships Among Equivalent Concepts Across Ontologies |
|
MedInfo. 2004 Sept.;2004: 459-463. |
(Abstract) (PDF)
|
|
Design, Implementation and Management of a Web-based Data Entry System for ClinicalTrials.gov |
Gillen JE, Tse T, Ide NC, McCray AT
|
Medinfo. 2004 Sept.;2004:1466-70. |
(Abstract) (PDF)
|
|
Design of Genetics Home Reference: A New NLM Consumer Health Resource |
Mitchell JA, Fun J, McCray AT
|
Journal of the American Medical Informatics Association. 2004 Nov.;11(6):439-447. |
(Abstract) (PDF)
|
|
Development of a Test Collection of Manually Extracted Semantic Relationships in Health Consumer Texts |
Slaughter LA, Rindflesch TC
|
MedInfo. 2004 Sept.;2004: 1865. |
(Abstract) (PDF)
|
|
Evaluating Consumer Informatics: Learning from Health Campaign Research |
|
Medinfo. 2004;2004:1147-51. |
(Abstract) (PDF)
|
|
Failure Analysis of MetaMap Transfer (MMTx) |
|
Medinfo. 2004 Sept.;2004:763-7. |
(Abstract) (PDF)
|
|
From Functional Similarity Among Gene Products to Dependence Relations Among Gene Ontology Terms (Abstract) |
Bodenreider O, Aubry M, Burgun A
|
Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:53. |
(Abstract) (PDF)
|
|
Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships |
Wang H, Azuaje F, Bodenreider O, Dopazo J
|
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB'2004) 2004:25-31. |
(Abstract) (PDF)
|
|
Gene Ontology-Driven Similarity for Gene Expression Correlation Analysis |
Azuaje FJ, Bodenreider O, Wang H, Dopazo J
|
Proceedings of the second conference on Standards and Ontologies for Functional Genomics (SOFG 2) 2004:47. |
(Abstract) |
|
GenesTraceTM: Biological Knowledge Discovery via Structured Terminology |
Sarkar IN, Cantor MN, Bodenreider O, Lussier YA
|
MedInfo. |
(Abstract) (PDF)
|
|
Gene Terms and English Words: An Ambiguous Mix |
Sehgal AK, Srinivasan P, Bodenreider O
|
Proceedings of the SIGIR 2004 Workshop on Search and Discovery in Bioinformatics 2004. |
(Abstract) (PDF)
|
|
Helping Healthcare Consumers Understand: An "Interpretive Layer" for Finding and Making Sense of Medical Information |
Soergel D, Tse T, Slaughter L
|
Medinfo. 2004 Sept.;2004:931-5. |
(Abstract) (PDF)
|
|
How Two Korean Newspapers Covered a Public Health Crisis |
Logan RA, Park J, Shin JH
|
Science Communication. 25:4:365-389 (June 2004) |
(Abstract) (PDF)
|
|
Identifying Anatomical Concepts in Biomedical Text for Automatic Selection of Images |
Bernhardt PJ, Rindflesch TC, Kilicoglu H, Tringali M
|
Medinfo. 2004 Sept.;2004: 1521. |
(Abstract) (PDF)
|
|
Identifying Respiratory Findings in Emergency Department Reports for Biosurveillance using MetaMap |
Chapman WW, Fiszman M, Dowling JN, Chapman BE, Rindflesch TC
|
Medinfo. 2004 Sept.;2004: 487-491. |
(Abstract) (PDF)
|
|
Incorporating Ontology-Driven Similarity Knowledge Into Functional Genomics: An Exploratory Study |
|
Proceedings of the 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE-2004) 2004:317-324. |
(Abstract) (PDF)
|
|
Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain |
|
Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE, editors. Pacific Symposium on Biocomputing 2004: World Scientific. 2004;: 250-261. |
(Abstract) (PDF)
|
|
Knowledge-intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations |
Aronson AR, Demner-Fushman D, Humphrey SM, Ide NC, Kim W, Liu H, Loanne RR, Mork JG, Smith LH, Tanabe LK, Wilbur WJ, Xie N
|
Proc TREC 2004, 503-11 |
(Abstract) (PDF)
|
|
Lessons Learned from Aligning two Representations of Anatomy |
Zhang S, Mork P, Bodenreider O
|
In: Hahn U, Schulz S, Cornet R, editors. Proceedings of the First International Workshop on Formal Biomedical Knowledge Representation (KR-MED 2004); 2004. p. 102-108. |
(Abstract) (PDF)
|
|
Mapping the Gene Ontology Into the Unified Medical Language System |
|
Comparative and Functional Genomics |
(Abstract) (PDF)
|
|
Methods for Diagnosing Physiological Conditions of Human Subjects from Multivariate Time Series Biosensor Data |
|
Physiological Data Modeling Contest, the Twenty-First International Conference on Machine Learning (ICML), 2004 July. |
(Abstract) (PDF)
|
|
Prevailing Impressions of Social Actors in Korean News Coverage of a Public Health Crisis |
Logan RA, Shin JH, Park J
|
Science Communication. 25:4:399-418 (June 2004) |
(Abstract) (PDF)
|
|
RxNav: A Semantic Navigation Tool for Clinical Drugs |
|
Medinfo. 2004 Sept.;2004: 1530. |
(Abstract) (PDF)
|
|
Strategies for Mapping Concepts in Gastrointestinal Endoscopy Reports to the UMLS Metathesaurus |
Tringali M, Rindflesch TC, Kilicoglu H, Fiszman M, Bodenreider O
|
Medinfo. 2004 Sept.;2004: 1885. |
(Abstract) (PDF)
|
|
Strategies for Supporting Consumer Health Information Seeking |
McCray AT, Ide NC, Loane RR, Tse T
|
Medinfo. 2004 Sept.;2004:1152-6. |
(Abstract) (PDF)
|
|
Summarization of an Online Medical Encyclopedia |
Fiszman M, Rindflesch TC, Kilicoglu H
|
MedInfo. 2004 Sept.;2004: 506-510. |
(Abstract) (PDF)
|
|
The NLM Indexing Initiative's Medical Text Indexer |
Aronson AR, Mork JG, Gay CW, Humphrey SM, Rogers WJ
|
Medinfo. 2004 Sept.;2004: 268-272. |
(Abstract) (PDF)
|
|
The Ontology-Epistemology Divide: A Case Study in Medical Terminology |
Bodenreider O, Smith B, Burugn A
|
Proceedings of the Third International Conference on Formal Ontology in Information Systems (FOIS2004): IOS Press; 2004. p. 185-195. |
(Abstract) (PDF)
|
|
The Unified Medical Language System (UMLS): Integrating Biomedical Terminology |
|
Nucleic Acids Res; Database Issue. 2004;32: 267-70. |
(Abstract) (PDF)
|
|
Using Natural Languge Processing, Locus Link, and the Gene Ontology to Compare OMIM to MEDLINE |
Libbus B, Kilicoglu H, Rindflesch TC, Mork JG, Aronson AR
|
Proceedings of the HLT-NAACL Workshop on Linking the Biological Literature, Ontologies and Databases: Tools for Users. 2004;:69-76. |
(Abstract) (PDF)
|
|
Using Symbolic Knowledge in the UMLS to Disambiguate Words in Small Datasets with a Naive Bayes Classifier |
|
Medinfo. 2004 Sept.;2004: 381-385. |
(Abstract) (PDF)
|
|
|
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Year 2003 | Back to top |
Aligning Representations of Anatomy Using Lexical and Structural Methods |
|
Proc. AMIA Symposium. 2003 Nov;:753-757. |
(Abstract) (PDF)
|
|
An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS |
Cantor MN, SI N, Hartel F, Bodenreider O, Lussier YA
|
Stud Health Technol Inform. 2003;:62-67. |
(Abstract) (PDF)
|
|
An Upper Level Ontology for the Biomedical Domain |
|
Comp Funct Genom. 2003;4:80-4. |
(Abstract) (PDF)
|
|
Biomedical Ontologies |
Bodenreider O, Mitchell JA, McCray AT
|
Pacific Symposium on Biocomputing: World Scientific. 2003;:562-564. |
(Abstract) (PDF)
|
|
Developing and Evaluating Criteria to Help Reviewers of Biomedical Informatics Manuscripts: A Case Report |
Ammenwerth E, Wolff AC, Knaup P, Ulmer H, Skonetzki S, Van Bemmel JH, McCray AT, Haux R, Kulikowski C
|
J Am Med Inform Assoc. 2003 June. |
(Abstract) (PDF)
|
|
Evaluation of WordNet as a Source of Lay Knowledge for Molecular Biology and Genetic Diseases: A Feasibility Study |
Bodenreider O, Burgun A, Mitchell JA
|
Stud Health Technol Inform. 2003;95:379-384. |
(Abstract) (PDF)
|
|
Exploring Adjectival Modification in Biomedical Discourse Across Two Genres |
Bodenreider O, Pakhomov S
|
Proc. of the ACL, 2003 Workshop, Natural Language Processing in Biomedicine. 2003;:105-112. |
(Abstract) (PDF)
|
|
Exploring Medical Expressions Used by Consumers and the Media: An Emerging View of Consumer Health Vocabularies |
|
AMIA Annual Symposium. 2003. |
(Abstract) (PDF)
|
|
Exploring Semantic Groups Through Visual Approaches |
Bodenreider O , McCray AT
|
Journal of Biomedical Informatics. 2003;36(6):414-432 |
(Abstract) (PDF)
|
|
From Phenotype to Genotype: Issues in Navigating the Available Information Resources |
Mitchell JA , McCray AT , Bodenreider O
|
Methods of Information in Medicine. 2003;42(5):557-563. |
(Abstract) (PDF)
|
|
Gene Indexing: Characterization and Analysis of NLM's GeneRIFs |
Mitchell JA , Aronson AR , Mork JG , Folk LC , Humphrey SM , Ward JM
|
Proc. AMIA Symposium. 2003 Nov;:460-464. |
(Abstract) (PDF)
|
|
Generating Hypotheses by Discovering Implicit Associations in the Literature: A Case Report of a Search for New Potential Therapeutic Uses for Thalidomide |
Weeber M, Vos R, Klein H, De Jong-Van Den Berg LT, Aronson AR, Molema G
|
J Am Med Inform Assoc. ;10(3):252-9. |
(Abstract) (PDF)
|
|
Graphical Visualization and Navigation of Genetic Disease Information |
Bodenreider O , Mitchell JA
|
Proc. AMIA Symposium. 2003 Nov;:792. |
(Abstract) (PDF)
|
|
Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts |
Fiszman M, Rindflesch TC, Kilicoglu H
|
Proc. AMIA Symposium. 2003 Nov;:239-243. |
(Abstract) (PDF)
|
|
Interpreting Hypernymic Propositions in an Online Medical Encyclopedia |
Fiszman M, Rindflesch TC, Kilicoglu H
|
Proc. AMIA Symposium. 2003 Nov;:840. |
(Abstract) (PDF)
|
|
Knowledge Augmentation for Aligning Ontologies: An Evaluation in the Biomedical Domain |
|
Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003: 109-114. |
(Abstract) (PDF)
|
|
Language and Vocabulary Tools |
Brown AC , Divita Guy , Aronson AR , McCray AT
|
Proc. AMIA Symposium. 2003 Nov;:. |
(Abstract) (PDF)
|
|
Machine Translation-Supported Cross Language Information Retrieval for a Consumer Health Resource |
Rosemblat G, Gemoets D, Browne AC, Tse T
|
AMIA Annual Symposium. 2003. |
(Abstract) (PDF)
|
|
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics |
Kayaalp, Mehmet , Aronson, Alan R , Humphrey, Susanne M, Ide, Nicholas C, Tanabe, Lorraine K
|
Proceedings of the Text Retrieval Conference (TREC-2003). 2003;: 175-84. |
(Abstract) (PDF)
|
|
Procedures for Mapping Vocabularies from Non-Professional Discourse and a Case Study from the Medical Domain |
|
ASIST Annual Meeting. 2003. |
(Abstract) (PDF)
|
|
Search Failures in Consumer Health Information Systems |
|
Proc. AMIA Symposium Proceedings. 2003 November; :431-434. |
(Abstract) (PDF)
|
|
Semantic Integration in Biomedicine |
|
Proceedings of the Semantic Integration Workshop at the Second International Semantic Web Conference. 2003;: 156-157. |
(Abstract) (PDF)
|
|
Semantic Relations Asserting the Etiology of Genetic Diseases |
Rindflesch TC , Libbus B , Hristovski D , Aronson AR , Kilicoglu H
|
Proc. AMIA Symposium. 2003 Nov;:554-558. |
(Abstract) (PDF)
|
|
Strength in Numbers: Exploring Redundancy in Hierarchical Relations Across Biomedical Terminologies |
|
Proc. AMIA Symposium. 2003 Nov;101-105:. |
(Abstract) (PDF)
|
|
The Genetics Home Reference: A New NLM Consumer Health Resource |
|
Proc. AMIA Symposium. 2003 Nov;:936. |
(Abstract) (PDF)
|
|
The Interaction of Domain Knowledge and Linguistic Structure in Natural Language Processing: Interpreting Hypernymic Propositions in Biomedical Text |
Rindflesch TC , Fiszman M
|
Journal of Biomedical Informatics. 2003;36(6):462-77. |
(Abstract) (PDF)
|
|
The UMLS Knowledge Source Server: An Object Model For Delivering UMLS Data |
Bangalore A , Thorn KE , Tilley C , Peters L
|
Proc. AMIA Symposium. 2003 Nov;:51-55. |
(Abstract) (PDF)
|
|
The UMLS Semantic Network and the Semantic Web |
|
Proc. AMIA Symposium. 2003 Nov;:351-355. |
(Abstract) (PDF)
|
|
Towards Linking Patients and Clinical Information: Detecting UMLS Concepts in E-mail |
Brennan PF, Rindflesch TC
|
J Biomed Inform. 2003 Aug-Oct;36(4-5):334-41 |
(Abstract) (PDF)
|
|
Towards Semi-Automatic Generation of Biomedical Ontologies |
Kashyap V , Ramakrishan C , Rindflesch TC
|
Proc. AMIA Symposium. 2003 Nov;:886. |
(Abstract) (PDF)
|
|
|
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Year 2002 | Back to top |
A Conceptual Framework for the Biomedical Domain |
|
The Semantics of Relationships: An Interdisciplinary Perspective. Boston: Kluwer Academic Publishers. 2002;:181-198. |
(Abstract) (PDF)
|
|
Assessing the Consistency of a Biomedical Terminology Through Lexical Knowledge |
Bodenreider O, Burgun A, Rindflesch TC
|
Int J Med Inf. 2002 Dec 4;67(1-3):85-95. |
(Abstract) (PDF)
|
|
Assessing the Consistency of a Biomedical Terminology Through Lexical Knowledge |
Bodenreider O, Burgun A, Rindflesch TC
|
Proc. of the Workshop on Natural Language Processing in Biomedical Applications. 2002;:77-83. |
(Abstract) (PDF)
|
|
A Study of Abbreviations in MEDLINE Abstracts |
Liu H, Aronson AR, Friedman C
|
Proc AMIA Symp. 2002 ;():464-8. |
(Abstract) (PDF)
|
|
Characterizing the Definitions of Anatomical Concepts in WordNet and Specialized Sources |
|
Proc. of the First Global WordNet Conference. 2002;:223-230. |
(Abstract) (PDF)
|
|
Clinicaltrials.gov: Linking Patients to Medical Research |
|
Cancer Informatics: Essential Technologies for Clinical Trials. New York: Springer Verlag. 2002;:302-307. |
(Abstract) (PDF)
|
|
Discovering Protein Similarity Using Natural Language Processing |
|
Proc AMIA Symp. 2002 ;():677-81. |
(Abstract) (PDF)
|
|
Evaluation of the UMLS as a Terminology and Knowledge Resource for Biomedical Informatics |
Bodenreider O, Mitchell JA, McCray AT
|
Proc. of AMIA Annual Symposium. 2002;:61-65. |
(Abstract) (PDF)
|
|
Experiences in Visualizing and Navigating Biomedical Ontologies and Knowledge Bases |
|
Proc. of the ISMB'SIG meeting; Bio-ontologies. 2002;:29-32. |
(Abstract) (PDF)
|
|
Exploring Text Mining from MEDLINE |
Srinivasan P, Rindflesch T
|
Proc AMIA Symp. 2002 ;():722-6. |
(Abstract) (PDF)
|
|
Finding UMLS Metathesaurus Concepts in MEDLINE |
Srinivasan S, Rindflesch TC, Hole WT, Aronson AR, Mork JG
|
Proc AMIA Symp. 2002 ;():727-31. |
(Abstract) (PDF)
|
|
From Phenotype to Genotype: Navigating the Available Information Resources |
Mitchell JA, McCray AT, Bodenreider O
|
Proc. of AMIA Annual Symposium. 2002;:1109. |
(Abstract) (PDF)
|
|
NLP-Based Information Extraction for Managing the Molecular Biology Literature |
|
Proc AMIA Symp. 2002 ;():445-9. |
(Abstract) (PDF)
|
|
Overcoming Impediments to Effective Health and Biomedical Digital Libraries, JCDL |
Hersh WJ, Velterop J, McCray AT, Eynsenbach G, Boguski M
|
JCDL. 2002;: 360. |
(Abstract) (PDF)
|
|
Panel on Digital Preservation, JCDL |
Ray J, Dale R, Moore R, Reich V, Underwood W, McCray AT
|
Panel on Digital Preservation, JCDL. 2002;: 365-367. |
(Abstract) (PDF)
|
|
Representation of Roles in Biomedical Ontologies: A Case Study in Functional Genomics |
Burgun A, Bodenreider O, Le Duff F, Moussouni F, Loreal O
|
Proc AMIA Symp. 2002 ;():86-90. |
(Abstract) (PDF)
|
|
Semantic Processing for Enhanced Access to Biomedical Knowledge |
Rindflesch TC, Aronson AR
|
Real World Semantic Web Applications, IOS Press. 2002;:157-72. |
(Abstract) (PDF)
|
|
The Lexical Properties of the Gene Ontology (GO) |
McCray AT, Browne AC, Bodenreider O
|
Proc. of AMIA Annual Symposium. 2002;:504-508. |
(Abstract) (PDF)
|
|
Unsupervised, Corpus-Based Method for Extending a Biomedical Terminology |
Bodenreider O, Rindflesch TC, Burgun A
|
Proc. of the ACL Workshop; Natural Language Processing in the Biomedical Domain. 2002;:53-60. |
(Abstract) (PDF)
|
|
Web Crawling Agents for Retrieving Biomedical Information |
Srinivasan P, Mitchell JA, Bodenreider O, Pant G, Menczer F
|
Proc. of the International Workshop on Bioinformatics and Multi-Agent Systems (BIXMAS). 2002 Jul. |
(Abstract) (PDF)
|
|
|
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Year 2001 | Back to top |
'Ome Sweet 'Omics - A Genealogical Treasury of Words |
|
Genealogical Treasury of Words. Scientist. 2001;15(7):8. |
(Abstract) (PDF)
|
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Aggregating UMLS Semantic Types for Reducing Conceptual Complexity |
McCray AT, Burgun A, Bodenreider O
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Medinfo. 2001 ;10(Pt 1):216-20. |
(Abstract) (PDF)
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An Object-Oriented Model for Representing Semantic Locality in the UMLS |
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Medinfo. 2001 ;10(Pt 1):161-5. |
(Abstract) (PDF)
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Aspects of the Taxonomic Relation in the Biomedical Domain |
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FOIS. 2001;: 222-233 |
(Abstract) (PDF)
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Automatic Indexing by Discipline and High-Level Categories: Methodology and Potential Applications |
Humphrey SM, Rindflesch TC, Aronson AR
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Advances in classification research. Proc. of the 11th ASIST SIG/CR Classification Research Workshop. 2001. |
(Abstract) (PDF)
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Automatic MeSH Term Assignment and Quality Assessment |
Kim W, Aronson AR, Wilbur WJ
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Proc AMIA Symp. 2001 ;():319-23. |
(Abstract) (PDF)
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Circular Hierarchical Relationships in the UMLS: Etiology, Diagnosis, Treatment, Complications, and Prevention |
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Proc AMIA Symp. 2001 ;():57-61. |
(Abstract) (PDF)
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Comparing Terms, Concepts and Semantic Classes in WordNet and the Unified Medical Language System |
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Proc. of the NAACL'2001 Workshop; WordNet and Other Lexical Resources: Applications, Extensions and Customizations. 2001;:77-82. |
(Abstract) (PDF)
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Developing a Test Collection for Biomedical Word Sense Disambiguation |
Weeber M, Mork JG, Aronson AR
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Proc AMIA Symp. 2001 ;():746-50. |
(Abstract) (PDF)
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Effective Mapping of Biomedical Text to the UMLS Metathesaurus: The MetaMap Program |
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Proc AMIA Symp. 2001 ;():17-21. |
(Abstract) (PDF)
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Evaluating UMLS Strings for Natural Language Processing |
McCray AT, Bodenreider O, Malley JD, Browne AC
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Proc AMIA Symp. 2001 ;():448-52. |
(Abstract) (PDF)
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Lexically-Suggested Hyponymic Relations Among Medical Terms and Their Representation in the UMLS |
Bodenreider O, Burgun A, Rindflesch TC
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Proc. of TIA'2001; Terminology and Artificial Intelligence. 2001;:11-21. |
(Abstract) (PDF)
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Mapping the UMLS Semantic Network into General Ontologies |
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Proc AMIA Symp. 2001 ;():81-5. |
(Abstract) (PDF)
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Methods for Exploring the Semantics of the Relationships Between Co-Occurring UMLS Concepts |
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Medinfo. 2001 ;10(Pt 1):171-5. |
(Abstract) (PDF)
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Principles for Digital Library Development |
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Communications of the ACM. 2001 May; 44(5): 48-54. |
(Abstract) (PDF)
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Relationships Among Knowledge Structures: Vocabulary Integration Within a Subject Domain |
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Relationships in the organization of knowledge: Kluwer. 2001;:81-98. |
(Abstract) (PDF)
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Year 2000 | Back to top |
Argument Identification for Arterial Branching Predications Asserted in Cardiac Catheterization Reports |
Rindflesch TC, Bean CA, Sneiderman CA
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Proc AMIA Symp. 2000 ;():704-8. |
(Abstract) (PDF)
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A Semantic Navigation Tool for the UMLS |
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Proc. of AMIA Annual Symposium. 2000;: 971. |
(Abstract) (PDF)
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Automatic Indexing by Discipline and High-Level Category: Methodology and Potential Applications |
Humphrey S, Rindflesch TC, Aronson AR
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Proc. of the 11th SIG/CR Classification Research Workshop. 2000;:103-16. |
(Abstract) (PDF)
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Better Access to Information About Clinical Trials |
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Ann Intern Med. 2000 Oct 17;133(8):609-14. |
(Abstract) (PDF)
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Comment les Usagers Accedent a l'Information Medicale Aux USA: l'Exemple de MEDLINEplus [How Consumers Access Health Information in the USA: The MEDLINEplus Example] |
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Innovation et Technologie en Biologie et Medecine. 2000;21(5):286-90. |
(Abstract) (PDF)
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De la Classification à la Connaissance des Maladies: Une Réflexion à Partir de la Classification Internationale des Maladies [From Classification to Knowledge About Diseases: Thoughts about the International Classification of Diseases] |
Botti G, Bodenreider O, Burgun A, Le Beux P, Fieschi M
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Innovation et Technologie en Biologie et Médecine. 2000;21(5):291-97. |
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Design and Implementation of a National Clinical Trials Registry |
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J Am Med Inform Assoc. ;7(3):313-23. |
(Abstract) (PDF)
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Developing Web Browser Recording Tools Using Server-Side Programming Technology |
Lu CJ, Bangalore A, Tse T
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Proc. of WebNet 2000, World conference on WWW and Internet: Association for the Advancement of Computing in Education. 2000;:372-7. |
(Abstract) (PDF)
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EDGAR: Extraction of Drugs, Genese, and Relations from the Biomedical Literature |
Rindflesch TC, Tanabe L, Weinstein JN, Hunter L
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Pac Symp Biocomput. 2000 ;():517-28. |
(Abstract) (PDF)
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Extracting Molecular Binding Relationships from Biomedical Text |
Rindflesch TC, Rajan J, Hunter L
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Proc. of the 6th Applied Natural Language Processing Conference. 2000;: 188-95. |
(Abstract) (PDF)
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Extracting the Lowest-Frequency Words: Pitfalls and Possibilities |
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Computational Linguistics. 2000;26(3):301-17. |
(Abstract) (PDF)
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Identifying Proper Names in Parallel Medical Terminologies |
Bodenreider O, Zweigenbaum P
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Stud Health Technol Inform. 2000 ;77():443-7. |
(Abstract) (PDF)
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Modelling Syllepse in Medical Knowledge Bases with Application in the Domain of Organ Failure and Transplantation |
Jacquelinet C, Bodenreider O, Burgun A
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Proc. of OntoLex; Workshop on Ontologies and Lexical Knowledge Bases 2000. |
(Abstract) (PDF)
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Strategies d'Identification des Noms Propres a Partir de Nomenclatures Medicales Paralleles |
Bodenreider O, Zweigenbaum P
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Traitement Automatique des Langues. 2000;41(3):727-757. |
(Abstract) (PDF)
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System Expansion and Integration with Agents in HSTAT |
Xiaocheng L, Prettyman M, Antonucci R
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Proc. of the World Multiconference on Systemics, Cybernetics, and Informatics. 2000 Jul.;: 2000. |
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Text-Based Discovery in Biomedicine: The Architecture of the DAD-System |
Weeber M, Klein H, Aronson AR, Mork JG, de Jong-van den Berg LT, Vos R
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Proc AMIA Symp. 2000 ;():903-7. |
(Abstract) (PDF)
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The NLM Indexing Initiative |
Aronson AR, Bodenreider O, Chang HF, Humphrey SM, Mork JG, Nelson SJ, Rindflesch TC, Wilbur WJ
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Proc AMIA Symp. 2000 ;():17-21. |
(Abstract) (PDF)
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Towards Efficient XML Query Processing, XML |
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Developer Day in XML 2000: Graphic Communications Association. 2000;:1-45. |
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Usability Issues in Developing a Web-Based Consumer Health Site |
McCray AT, Dorfman E, Ripple A, Ide NC, Jha M, Katz DG, Loane RF, Tse T
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Proc AMIA Symp. 2000 ;():556-60. |
(Abstract) (PDF)
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Using UMLS Semantics for Classification Purposes |
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Proc AMIA Symp. 2000 ;():86-90. |
(Abstract) (PDF)
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