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CCAP BAC Clones

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Chromosome 20


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
20p13f RP11-147L21 chr20 0Mb AQ373834 SP6+,
CL423326 T7,
CL423321 SP6
AC040953 AFM077XD3+,
AFM077XD3,
T98414
20p13e RP11-314N13 chr20 1Mb AQ503754 T7,
AQ503753 SP6
AL136531 
20p13b RP11-737G10 chr20 3Mb AQ455994 T7,
AQ450629 SP6
AC023420 
20p13a RP11-48M7 chr20 3Mb AQ198009,
CL423352 T7,
CL423351 SP6,
AQ198007
  AFM234TF10
20p12.3c RP11-235C20 chr20 5Mb CL423224 T7,
CL423219 SP6
  AFMB352XD9
20p12.3a RP11-19D2 chr20 7Mb B92163 SP6,
B81947 T7
AL080248 
20p12.2b RP11-24K4 chr20 9Mb AQ014010,
B84457 SP6,
B88778 T7
  AFMA086WE9
20p12.2a RP11-90E23 chr20 11Mb AQ281557 SP6,
AQ281560 T7
  AFM292XB5
20p12.1d RP11-157E14 chr20 12Mb AQ372757 SP6,
AQ372761 T7
AL133331 
20p12.1c RP11-54N6 chr20 14Mb AQ082802,
CL423252 SP6,
CL423255 T7,
AQ082803
AL355133 
20p12.1b RP11-51O4 chr20 15Mb CL423282 SP6,
AQ053674,
CL423286 T7,
AQ053676
  AFM044XB4+,
AFM044XB4+,
AFM044XB4,
AFM291WE5
20p12.1a RP11-11M17 chr20 17Mb B73188 SP6,
B73189 T7
AC013628 AFM242YF8+,
AFM242YF8
20p11.23b RP11-97N19 chr20 18Mb AQ319526 T7,
AQ319525 SP6
AL136090 
20p11.23a~11.22b RP11-470C13 chr20 20Mb AZ694839 T7,
CL423319 T7
AL161658 RH12147
20p11.21c RP11-500O11 chr20 22Mb   AL133464 
20p11.21b RP11-58B10 chr20 24Mb AQ201224,
CL423349 T7,
CL423346 SP6,
AQ201222
  AFMA191XC1
20q11.21a RP11-1147I19 chr20 29Mb AQ698668 SP6,
AQ708250 T7
AL359765 
20q11.21c RP11-94H15 chr20 31Mb AQ282137 SP6,
AQ315878 T7
AC023015 
20q11.22a RP11-318N1 chr20 32Mb AQ536609 SP6,
AQ536610 T7
  stdJ791H18T7
20q11.22b RP11-381P2 chr20 33Mb AQ532467 SP6+,
CL423292 T7,
CL423287 SP6
AL356422 
20q11.23b RP11-382A12 chr20 34Mb AQ547630 SP6*,
AQ547632 T7*
AL365505 
20q11.23b RP11-382A12 chr1 245Mb AQ547632 T7,
AQ547630 SP6
AL365505* 
20q11.23c RP11-122O1 chr20 36Mb AQ342907 SP6,
AQ342910 T7
AL133519 
20q12 RP11-17F3 chr20 40Mb B85443 T7,
AZ515860 SP6
  AFM163YH8+,
AFM163YH8
20q12b RP11-9M24 chr20 38Mb CL423325 T7+,
CL423320 SP6
  AFM142XH4+,
AFM142XH4
20q13.11a RP11-151A11 chr20 41Mb AQ376230 SP6,
AQ376253 T7
AL359695 AFMC013YH9
20q13.12a RP11-30F23 chr20 42Mb B87770 SP6,
B87771 T7
  AFMA060WG1
20q13.12c~13.13c RP11-314A4 chr20 45Mb AQ506983 T7,
AQ506981 SP6
AL359434 
20q13.13d~13.13e RP11-5P14 chr20 48Mb B69678 T7,
B49327 T7,
AZ517073 SP6
  AFM205TC9
20q13.2a RP11-10D18 chr20 49Mb AZ520201 T7,
B72760 SP6
  AFMA192WB1
20q13.2c RP11-1F20 chr20 52Mb B63548 T7,
AQ280999 SP6
AC015742 
20q13.2d RP11-172C21 chr20 53Mb CL423191 T7,
CL423190 SP6
  AFMA114YA5,
AFMA225WE9
20q13.31a RP11-46O3 chr20 54Mb AQ199652,
CL423218 SP6,
CL423223 T7,
AQ199655
AL161657 
20q13.32a RP11-344C10 chr20 56Mb AQ540379 SP6,
AQ540381 T7
  stdJ646G2SP6
20q13.32b RP11-164D18 chr20 57Mb AQ380608 SP6,
AQ380612 T7
AL389889 
20q13.33a RP11-723K16 chr20 59Mb CL423251 SP6,
CL423254 T7,
AQ437220 T7
AL365229 
20q13.33d RP11-305P22 chr20 61Mb   AL121673 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


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