In this issue... 

1997 Santa Fe Highlights 
Patrinos Address 
Joint Genome Institute (JGI) Comes of Age 
JGI Sequencing 
JGI Informatics 
JGI and Bermuda Quality Sequence 
Grants Awarded for JGI Collaboration 
JGI Sequencing Clones 
Sequencing Strategies,Tools 
Gene-Discovery Resources 
Sequencing at NIH NHGRI 
Functional Genomics 
Data Surge Challenges Informaticists 
Genome Annotation: Informatics Advances Needed for Age of Functional Genomics 
ELSI: Rapid Progress Accelerates Societal Impact of Genome Research 
1999 DOE HGP Meeting Set for California 

Human Genome Project Administration 
New 5-Year Goals, Project Midpoint 
DOE, NIH Discuss Informatics 
JASON Group Review 
BER Genome Instrumentation Research 

In the News 
Private-Sector Sequencing Plan 
Bang for the Buck: Government-Backed Research Underpins Potentially High Payoff Ventures 
Palmisano Joins DOE OBER 
DNA Files series to be on NPR 
HUGO Addresses Sample Collection 
Sickle Cell Mice May Lead to New Treatments 
TIGR Sequencing 6 More Microbes 
Tuberculosis Microbe Sequenced 
C. Elegans Sequencing Nears Finish 
HGMIS Website Restructured 
cDNA Cloning Workshop Identifies Critical Issues 
Survey Identifies Growing Need for Synchrotron Analyses 
NCGR Announcements 

Publications 
Report on Functional Consequences of Gene Expression 
Book on Tuskegee Conference 
Book Focuses on Biomarker Implications, Conference Proceedings 
Genome Analysis Protocol Handbook 

Software and the Internet 
Mouse Genome Informatics Release 2.0 
New System Identifies Polymorphisms 
DOE Supports Web Site for 1997 AAAS Genome Symposium 
Expressed Human Genome Database 

Funding 
DOE ELSI 
NIH NHGRI 
NHGRI Initiates Mailing List 
U.S. Genome Research Funding 

Meeting Calendars & Acronyms 
Genome and Biotechnology Meetings 
Training Courses and Workshops 
Acronyms 

HGN archives and subscriptions   
HGP Information home 

Eyes on the Prize: Deliver the Sequence

Complete, Accurate Sequence Most Important, Patrinos Says

The message delivered by Ari Patrinos last November at the Sixth DOE Human Genome Program Contractor-Grantee meeting in Santa Fe was clear and unequivocal: The Human Genome Project needs to stay focused on the commitment to obtain a highly accurate, complete human DNA sequence by 2005 (see New 5-Year Plan). More than 400 genome program grantees, managers, and guests attended the workshop in the city of the "holy faith", high above the southwestern desert.

Patrinos, associate director of the DOE Office of Biological and Environmental Research (OBER), explained the rationale for dramatically increasing support for large-scale sequencing at the expense of other projects in the genome program. It's simple, he said. "We need to take our human genome goals seriously, or public support may evaporate and bring potentially serious budgetary repercussions."

OBER's decisions, Patrinos continued, are aimed specifically toward DOE's pledge to complete at least human chromosomes 5, 16, and 19 (about 340 Mb or 10% of the genome) over the next 7 years. He then outlined the steps DOE is taking toward its daunting goal.

Sequencing Factory on Track
DOE made the first and most important change in its genome program in late 1996 by joining genome center sequencing work at Lawrence Livermore National Laboratory (LLNL), Lawrence Berkeley National Laboratory (LBNL), and Los Alamos National Laboratory into the Joint Genome Institute (JGI). This move is aimed at exploiting individual strengths, reducing redundancy, and creating the critical mass needed.

"The only way to do production sequencing on the required competitive scale is with a factory approach," Patrinos asserted. Work on JGI's new Production Sequencing Facility (PSF) began in January in Walnut Creek, California, about 35 minutes from LLNL and LBNL.

With PSF operations scheduled to begin in late fall 1998, Patrinos said he felt "very optimistic." He credited the hard work and strong support of principal scientists, senior management at the three laboratories, and DOE advisors, many of whom were at the meeting.

Sequence quality generated by JGI will conform to or exceed community standards (see Bermuda-Quality Sequence) and include full and immediate data release. JGI will be held to the highest standards of quality assurance and control and database sharing. Expectations are for strong academic collaborations with sequencing centers funded under the NIH National Human Genome Research Institute, Patrinos said.

Informatics and Technology Development
An effective program of technology and informatics development is essential to success in production sequencing, Patrinos continued. He also stressed the importance of coordinating increased informatics efforts not only within the program but also with NIH and the National Science Foundation. "This is critical," he said, "for dealing with the 3 billion bp of human DNA and for the post-project challenges that will confront us in understanding the biology of long strings of sequence, a new field called functional genomics." (See New Awards, and Data Surge.)

Preparing for the Future
Patrinos expressed his strong belief that DOE's Human Genome Program is important for the future of biology, science, and society and that it requires the participation of many disciplines to bring its promise to fruition. He pointed to the Biological and Environmental Research Program's 50-year tradition of supporting a diverse portfolio of research that drives science at disciplinary interfaces where most advances occur. "DOE has done its part with training physicists, engineers, and computer scientists to strengthen the program in ways that can help us meet genome project objectives and also generate other applications," Patrinos said.

• http://www.er.doe.gov/production/ober/ober_top.html
• http://www.er.doe.gov/production/ober/ber50.html
• A Vital Legacy --a booklet detailing the first 50 years of the DOE BER program is available free of charge by contacting Betty Mansfield.

The electronic form of the newsletter may be cited in the following style:
Human Genome Program, U.S. Department of Energy, Human Genome News (v9n3).