Name | Category | Version | Platform |
ASSP |
Protein Analysis, Sequence Analysis, Bioinformatics |
1.2
|
SGI IRIX
|
BLAST |
Blast, Bioinformatics |
August, 2003 |
SunOS, IRIX64, AIX, Linux and OSF1 |
Blast2Seqs |
Blast, Bioinformatics
|
May, 2002
|
SunOS, IRIX64, AIX, Linux and OSF1
|
BlastN |
Blast, Bioinformatics
|
April, 2002 |
SunOS, IRIX64, AIX, Linux and OSF1
|
BlastP |
Blast, Bioinformatics
|
April, 2002 |
SunOS, IRIX64, AIX, Linux and OSF1
|
BlastX |
Blast, Bioinformatics
|
April, 2002
|
SunOS, IRIX64, AIX, Linux and OSF1
|
BLAT |
Blat, Bioinformatics |
V.21 |
OSF1 |
Chopper |
Utility, Bioinformatics
|
June, 2002 |
SunOS and OSF1
|
Clustal W |
Alignment, Sequence Analysis, Bioinformatics |
1.83
|
SGI MIPS (Irix), SGI Altix (Linux IA-64), Linux IA-32
|
Clustal X |
Alignment, Sequence Analysis, Bioinformatics |
1.81
|
SGI
|
Clustalw |
Alignment, Bioinformatics
|
version 1.8 |
SunOS, IRIX64 and OSF1
|
ConsInspector |
Gene Regulation, Sequence Analysis, Bioinformatics, Molecular Modeling |
3.3
|
SGI Irix
|
Core-find |
Protein Analysis, Sequence Analysis, Bioinformatics |
|
SGI Irix
|
CoreSearch |
Gene Regulation, Sequence Analysis, Bioinformatics |
1.3
|
SGI Irix
|
COVE |
RNA Analysis, Sequence Analysis, Bioinformatics |
2.4.4
|
SGI Irix, Linux
|
Cross |
Cross_match, Comparison, Bioinformatics
|
June, 2002 |
SunOS, IRIX64 and OSF1
|
Dipro2.0 |
Protein analysis, Bioinformatics |
2.0 |
Linux |
EdScan |
RNA Analysis, Sequence Analysis, Bioinformatics
|
|
IRIX64
|
EFFold |
RNA Analysis, Sequence Analysis, Bioinformatics
|
|
IRIX64
|
EMBOSS-2.7.1 |
bioinformatics,emboss |
v2.7 |
ncisgi,ncies45 |
ESPript |
Molecular Visualization; Alignment, Sequence Analysis, Bioinformatics |
1.99
|
SGI
|
FormTestApp |
Bioinformatics
|
December, 2002
|
SunOS, IRIX64 and OSF1
|
Frag_pI |
protein analysis, bioinformatics |
August 2003 |
SunOS |
GCG Wisconsin Package |
Bioinformatics, GCG |
|
ncies45 |
GenomeInspector |
Gene Regulation, Sequence Analysis, Bioinformatics |
1.1
|
SGI
|
GenScan |
Gene Finder, Gene Prediction, Bioinformatics
|
June, 2002 |
SunOS, Linux and OSF1
|
GetDoubleDNA |
utility, Bioinformatics
|
February, 2003 |
SunOS
|
GetSequence |
Utility, Bioinformatics
|
November, 2002
|
SunOS
|
GMap |
Genome Mapping, Bioinformatics |
2005-07-15 |
IRIX64, Linux ... |
Jalview |
Alignment, Sequence Analysis, Bioinformatics |
1.7.5b
|
SGI
|
LARD |
Phylogenetic Analysis, Bioinformatics |
2.2
|
SGI
|
MegaBlast |
Blast,Bioinformatics |
2.2.8 |
IRIX64 |
miRNA |
RNA analysis, Sequence analysis, Bioinformatics |
targetscan -- 1.0beta
miranda --1.0b |
IRIX64 |
Modeltest |
Phylogenetic Analysis, Bioinformatics |
3.6 |
SGI Irix
Linux-32bit
Linux-64bit (SGI Altix) |
PAUP |
Phylogenetic Analysis, Bioinformatics |
4.0b10 |
Linux |
PHYLIP |
Phylogenetic Analysis, Bioinformatics |
3.5
|
SGI
|
pI_plot |
protein analysis, bioinformatics |
September 2003 |
Linux |
PKNOTS (Pseudoknots) |
RNA Analysis, Sequence Analysis, Bioinformatics |
1.0
|
SGI, Linux
|
Primer0.5 |
Primer, PCR, Bioinformatics
|
0.5
|
SunOS, IRIX64 and OSF1
|
Primer3 |
Primer Design, PCR, Bioinformatics
|
3.0
|
SunOS, IRIX64 and OSF1
|
Promoter |
Gene Regulation, Bioinformatics
|
November, 2002
|
SunOS
|
PSIBlast |
Blast, Bioinformatics |
|
IRIX64, Linux ... |
rdch |
bioinformatics |
1.0 |
Any unix platform with gcc |
Readseq |
utility, Bioinformatics
|
03-1997
|
SunOS
|
RefPrimer |
Primer Design, PCR, Bioinformatics
|
October, 2002
|
SunOS, IRIX64 and OSF1
|
Repeatmasker |
Repeat Finder, Bioinformatics
|
09/09/2000 |
SunOS, IRIX64 and OSF1
|
reverseSeq |
utility, Bioinformatics |
May, 2004 |
Linux |
RNAfold |
Vienna RNA, RNA analysis, Sequence analysis, Bioinformatics |
1.4 |
SunOS, IRIX64, OSF1 |
RNAGA |
RNA Analysis, Sequence Analysis, Bioinformatics
|
|
IRIX64
|
Screen |
Screen, cross_match, Bioinformatics |
June, 2002 |
SunOS, IRIX64 and OSF1
|
SegFold |
RNA Analysis, Sequence Analysis, Bioinformatics
|
|
IRIX64
|
Sequence Space |
Protein Analysis, Sequence Analysis, Bioinformatics |
|
SGI
|
Seqweb |
bioinformatics, GCG, Seqweb |
1.1 |
|
SIGNALP |
Protein Analysis, Sequence Analysis, Bioinformatics |
3.0 |
SGI Irix
Linux-32bit |
SigStb |
RNA Analysis, Sequence Analysis, Bioinformatics
|
|
IRIX64
|
SNP |
SNP, Bioinformatics
|
November, 2002
|
SunOS
|
Snpinfo |
SNP, Bioinformatics
|
June, 2002 |
SunOS
|
SsahaNuc |
Ssaha, Bioinformatics
|
ssaha3 |
OSF1
|
StrFinder |
Repeat Finder, String Finder, Bioinformatics
|
September, 2002
|
OSF1, IRIX64 and SunOS
|
Swat |
Cross_match, Comparison, Bioinformatics |
|
IRIX64, Linux ... |
TMHMM |
Bioinformatics, Sequence Analysis, Protein Analysis |
2.0c
|
SGI Irix
Linux-32bit |
Topal |
Phylogenetic Analysis, Bioinformatics |
2.03b
|
SGI
|
ViennaRNA |
Molecular Modeling; RNA Analysis, Sequence Analysis, Bioinformatics |
1.4
|
SGI, Linux
|
Wise2 |
GeneWise, Bioinformatics
|
2.2.0
|
SunOS, Linux and OSF1
|