ABCC : Application's document Page

StrFinder At ABCC
Name: 
StrFinder
Version(s): 
September, 2002
Category: 
Repeat Finder, String Finder, Bioinformatics
Author(s)/Vendor(s): 
Jack Collins
Advanced Biomedical Computing Center(ABCC)
Program Description: 
A perfect tandem repeat finding program. It was written in c using standard
string comparison techniques.
Computer platform(s): 
OSF1, IRIX64 and SunOS
Location: 
/abcc/apps/`uname`/abcc/strfinder
Access: 
./strfinder -seq dna_file -repsiz repeat_size -minrep min_num_reps -sql sql_basename
 dna_file in fasta format (REQUIRED)
 OPTIONAL command parameters:
 sql_basename: sql .ndx and .fas output files will be named 
 sql_basename: sql_basename_ptr.ndx and sql_basename_ptr.fas
Documentation: 
http://www.abcc.ncifcrf.gov/app/htdocs/appdb/appinfo.php?appname=StrFinder
Web Site: 
http://www.abcc.ncifcrf.gov/app/htdocs/appdb/drawpage.php?appname=StrFinder
ABCC Contact Person: 
Bob Stephens
(301)846-5787
bobs@ncifcrf.gov

Jigui Shan
(301)846-5157
shanj@ncifcrf.gov
Created By: 
Jigui Shan and Bob Stephens
Created Time: 
2002-09-20
Updated By:
Updated Time: 





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