ABCC : Application's document Page

Blast2Seqs At ABCC
Name: 
Blast2Seqs
Version(s): 
May, 2002
Category: 
Blast, Bioinformatics
Author(s)/Vendor(s): 
Tatusova TA, Madden TL.
National Center for Biotechnology Information (NCBI), National Library of Medicine, 
National Institutes of Health, Bethesda, MD 20894, USA.
Program Description: 
BLAST2SEQS  compares 2 sequences of the same type i.e. either nucleotide 
or amino acid sequence, against each other using the BLAST algorithm.
Computer platform(s): 
SunOS, IRIX64, AIX, Linux and OSF1
Location: 
/abcc/apps/`uname`/ncbi/bl2seq
Access: 
for web use:
http://www.abcc.ncifcrf.gov/app/htdocs/appdb/drawpage.php?appname=Blast2Seqs
for commandline use:
bl2seq -p blastn parameters -i QUERY1 -o out.QUERY -j QUERY2
bl2seq   arguments:
  -i  First sequence [File In]
  -j  Second sequence [File In]
  -p  Program name: blastp, blastn, blastx, tblastn, tblastx. For blastx 1st sequence 
      should be nucleotide, tblastn 2nd sequence nucleotide [String]
  -g  Gapped [T/F]
    default = T
  -o  alignment output file [File Out]
    default = stdout
Documentation: 
http://www.abcc.ncifcrf.gov/app/htdocs/appdb/appinfo.php?appname=Blast2Seqs
Web Site: 
http://www.abcc.ncifcrf.gov/app/htdocs/appdb/drawpage.php?appname=Blast2Seqs
ABCC Contact Person: 
Bob Stephens
(301)846-5787
bobs@ncifcrf.gov

Jigui Shan
(301)846-5157
shanj@ncifcrf.gov
Created By: 
Jigui Shan and Bob Stephens
Created Time: 
2002-05-15
Updated By:
Updated Time: 





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