ABCC : Application's document Page

RNAfold At ABCC
Name: 
RNAfold
Version(s): 
1.4
Category: 
Vienna RNA, RNA analysis, Sequence analysis, Bioinformatics
Author(s)/Vendor(s): 
Ivo L Hofacker, Walter Fontana, Sebastian Bonhoeffer, Peter F Stadler.
Program Description: 
RNAfold reads RNA sequences from stdin and calculates their minimum free energy (mfe) structure, 
partition function (pf) and base pairing probability matrix. It returns the mfe structure in bracket notation,
its energy, the free energy of the thermodynamic ensemble and the frequency of the mfe structure in the 
ensemble to stdout. It also produces PostScript files with plots of the resulting secondary structure graph 
and a "dot plot" of the base pairing matrix.
Computer platform(s): 
SunOS, IRIX64, OSF1
Location: 
/abcc/apps/`uname`/ViennaRNA-1.4/bin
Access: 
for web use:
http://www.abcc.ncifcrf.gov/app/htdocs/appdb/drawpage.php?appname=RNAfold
for commandline use:
log onto nciaxp/ncisgi/SunOS, go to directory /abcc/apps/`uname`/ViennaRna-1.4/bin/
Documentation: 
/app/htdocs/appdb/appinfo.php?appname=RNAfold
Web Site: 
/app/htdocs/appdb/drawpage.php?appname=RNAfold
ABCC Contact Person: 
Bob Stephens
(301)846-5787
bobs@ncifcrf.gov

Jigui Shan
(301)846-5157
shanj@ncifcrf.gov
Created By: 
Jigui Shan
Created Time: 
2004-03-24
Updated By: 


Updated Time:






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