Trace Archive Reports
Incoming Data on 01-04-2008
This report provides cumulative trace accumulation (trace counts, total bases and Q20 bases). There are some depositions that will show 0 q20 bases. This is likely due to the center submitting ABI files and not providing quality calls separately.
The statistics below represents only data loaded during the last week. The accumulation is indicated with the '+' sign. To get full report, which includes organisms not received additions during the week, press the "Save" button at the top of the page.
| Species Code | Center | Trace Type Code | Number of Traces |
Number of Base Pairs |
Number of Base Pairs with Qualities > 20 |
% |
|---|---|---|---|---|---|---|
| ALLOMYCES MACROGYNUS | WIBR | WGS | 367,963 +39,166 |
305,732,404 +31,097,214 |
182,147,006 +22,293,193 |
59.58 |
| ATELES GEOFFROYI | NISC | SHOTGUN | 111,920 +5,574 |
118,709,960 +5,881,173 |
73,857,232 +3,872,358 |
62.22 |
| BOS TAURUS | BCM | SHOTGUN | 10,188,265 +882 |
9,981,512,776 +737,830 |
8,068,766,042 +659,629 |
80.84 |
| CANIS FAMILIARIS | WIBR | OTHER | 31,588 +33 |
27,046,777 +27,469 |
12,898,499 +15,318 |
47.69 |
| CAPSASPORA OWCZARZAKI | WIBR | WGS | 267,072 +95,492 |
232,460,730 +81,890,815 |
180,508,429 +63,286,153 |
77.65 |
| CERCOPITHECUS AETHIOPS | NISC | SHOTGUN | 704,850 +4,090 |
726,293,068 +4,344,746 |
444,533,863 +2,836,889 |
61.21 |
| DASYPUS NOVEMCINCTUS | BCM | WGS | 13,764,964 +184,298 |
12,672,628,388 +161,967,849 |
10,802,680,870 +140,217,485 |
85.24 |
| DENGUE VIRUS | WIBR | PCR | 96,608 +56 |
84,567,354 +49,534 |
46,488,061 +31,619 |
54.97 |
| ECHINOPS TELFAIRI | NISC | SHOTGUN | 706,391 +5,412 |
735,382,504 +5,725,249 |
491,821,531 +3,624,701 |
66.88 |
| GORILLA GORILLA GORILLA | NISC | SHOTGUN | 78,285 +5,479 |
82,577,912 +5,775,713 |
49,743,391 +3,821,662 |
60.24 |
| HOMO SAPIENS | ABC | PCR | 306,621 +8,640 |
168,546,530 +4,858,235 |
132,917,237 +3,696,743 |
78.86 |
| HOMO SAPIENS | NISC | PCR | 190,184 +15,000 |
150,537,947 +11,846,621 |
100,067,173 +8,396,015 |
66.47 |
| HOMO SAPIENS | WUGSC | PCR | 3,548,036 +42 |
2,275,732,400 +32,329 |
1,171,529,153 +18,774 |
51.48 |
| HOMO SAPIENS | WUGSC | PRIMERWALK | 13,225 +365 |
11,226,942 +304,253 |
7,414,334 +214,386 |
66.04 |
| HOMO SAPIENS | WUGSC | SHOTGUN | 749,945 +14,698 |
547,759,761 +11,021,277 |
402,065,166 +8,211,919 |
73.40 |
| KUTZNERIA SP. 744 | WIBR | WGS | 6,240 +96 |
4,634,062 +78,352 |
3,174,474 +54,367 |
68.50 |
| LAMA PACOS | BCCAGSC | CLONEEND | 7,174 +7,174 |
7,898,541 +7,898,541 |
5,868,079 +5,868,079 |
74.29 |
| LATIMERIA MENADOENSIS | WIBR | OTHER | 1,698 +239 |
1,547,701 +210,058 |
948,360 +162,816 |
61.28 |
| MACACA MULATTA | BCM | SHOTGUN | 4,513,928 +2,458 |
4,128,673,221 +2,042,449 |
3,341,818,288 +1,661,290 |
80.94 |
| MORAXELLA BOVIS | BCM | TRANSPOSON | 1,790 +1,790 |
1,799,579 +1,799,579 |
1,518,899 +1,518,899 |
84.40 |
| MYCOBACTERIUM TUBERCULOSIS | WIBR | OTHER | 8,554 +1,389 |
6,933,875 +1,070,888 |
3,130,277 +386,981 |
45.14 |
| MYCOBACTERIUM TUBERCULOSIS | WIBR | WGS | 995,743 +30,971 |
808,212,576 +26,014,961 |
470,819,695 +18,744,554 |
58.25 |
| NOMASCUS LEUCOGENYS LEUCOGENYS | NISC | SHOTGUN | 674,738 +8,607 |
709,785,589 +9,141,638 |
440,495,972 +5,579,454 |
62.06 |
| ORNITHORHYNCHUS ANATINUS | NISC | SHOTGUN | 763,975 +1,665 |
757,386,831 +1,779,840 |
509,155,720 +1,026,941 |
67.23 |
| ORYCTOLAGUS CUNICULUS | NISC | SHOTGUN | 886,704 +5,064 |
900,734,252 +5,398,277 |
625,887,162 +3,662,181 |
69.49 |
| ORYCTOLAGUS CUNICULUS | WIBR | WGS | 22,576,238 +235,004 |
19,757,433,729 +200,792,120 |
15,089,164,822 +150,788,812 |
76.37 |
| OTOLEMUR GARNETTII | WIBR | WGS | 8,381,668 +699,576 |
7,651,220,541 +606,476,901 |
5,512,420,392 +490,683,436 |
72.05 |
| PAN TROGLODYTES | IMBGA | SHOTGUN | 194,455 +878 |
221,188,305 +1,128,678 |
124,959,831 +601,383 |
56.49 |
| PAN TROGLODYTES | NISC | SHOTGUN | 713,828 +2,428 |
580,452,218 +2,572,769 |
435,825,620 +1,729,026 |
75.08 |
| PAPIO ANUBIS | NISC | SHOTGUN | 1,075,519 +4,208 |
1,062,324,219 +4,473,586 |
722,164,836 +2,871,932 |
67.98 |
| PAPIO HAMADRYAS | BCM | WGS | 10,588,253 +383,310 |
10,005,599,852 +355,064,245 |
8,462,534,709 +302,345,384 |
84.58 |
| PONGO PYGMAEUS ABELII | WUGSC | PCR | 4,885 +57 |
3,732,109 +39,761 |
2,102,783 +18,959 |
56.34 |
| PONGO PYGMAEUS ABELII | WUGSC | PRIMERWALK | 48,730 +1,003 |
42,589,992 +851,765 |
27,304,604 +563,854 |
64.11 |
| PONGO PYGMAEUS ABELII | WUGSC | SHOTGUN | 3,415,136 +10,467 |
2,535,888,806 +7,706,533 |
1,906,185,840 +5,901,519 |
75.17 |
| PTEROPUS VAMPYRUS | BCCAGSC | CLONEEND | 8,343 +4,387 |
10,091,378 +5,531,901 |
7,401,657 +4,051,506 |
73.35 |
| PTEROPUS VAMPYRUS | NISC | SHOTGUN | 299,367 +991 |
316,175,119 +1,045,193 |
199,474,684 +689,824 |
63.09 |
| RHODNIUS PROLIXUS | WUGSC | WGS | 4,680,933 +354,461 |
3,614,534,559 +286,935,335 |
2,907,134,083 +229,378,879 |
80.43 |
| SPERMOPHILUS TRIDECEMLINEATUS | NISC | SHOTGUN | 509,413 +1,433 |
536,390,420 +1,522,350 |
335,974,399 +780,358 |
62.64 |
| SPIZELLOMYCES PUNCTATUS | WIBR | WGS | 273,382 +47,978 |
231,164,933 +41,962,565 |
177,816,050 +32,408,728 |
76.92 |
| ZEA MAYS | WUGSC | PCR | 94,654 +932 |
73,247,943 +715,793 |
42,794,264 +413,358 |
58.42 |
| ZEA MAYS | WUGSC | PRIMERWALK | 969,056 +8,439 |
836,384,216 +7,277,087 |
516,532,689 +4,833,022 |
61.76 |
| ZEA MAYS | WUGSC | SHOTGUN | 24,334,254 +2,557 |
18,602,193,207 +1,852,192 |
13,933,299,716 +1,391,855 |
74.90 |