Common Fields
| Common Field | Description | |
|---|---|---|
| [see RFC] ACCESSION | Genbank/EMBL/DDBJ accession number | |
| [see RFC] AMPLIFICATION_FORWARD | The forward amplification primer sequence | |
| [see RFC] AMPLIFICATION_REVERSE | The reverse amplification primer sequence | |
| [see RFC] AMPLIFICATION_SIZE | The expected amplification size for a pair of primers | |
| [see RFC] ANONYMIZED_ID | Anonymous ID for an individual | |
| [see RFC] ATTEMPT | Number of times the sequencing project has been attempted by the center and/or submitted to the Trace Archive. | |
| [see RFC] CENTER_NAME | Name of the sequencing center | |
| [see RFC] CENTER_PROJECT | Center defined project name | |
| [see RFC] CHEMISTRY | Description of the chemistry used in the sequencing reaction | |
| [see RFC] CHEMISTRY_TYPE | Type of chemistry used in the sequencing reaction | |
| [see RFC] CHROMOSOME | Chromosome to which the trace is assigned | |
| [see RFC] CLONE_ID | The name of the clone from which the trace was derived | |
| [see RFC] CLONE_ID_LIST | Semi-colon delimited list of clones if the Strategy is PoolClone | |
| [see RFC] COLLECTION_DATE | The full date, in "Mar 2 2006 12:00AM" format, on which an environmental sample was collected | |
| [see RFC] CVECTOR_ACCESSION | Repository ( GenBank/EMBL/DDBJ) accession identifier for the cloning vector | |
| [see RFC] CVECTOR_CODE | Center defined code for the cloning vector | |
| [see RFC] DEPTH | Depth (in meters) at which an environmental sample was collected | |
| [see RFC] ELEVATION | Elevation (in meters) at which an environmental sample was collected | |
| [see RFC] ENVIRONMENT_TYPE | Type of environment from which an environmental sample was collected | |
| [see RFC] EXTENDED_DATA | Extra ancillary information wrapped around in a EXTENDED_DATA block, where actual values are provided with a special "field" tag" | |
| [see RFC] FEATURE_ID_FILE_NAME | Reference to a common FEATURE_ID_FILE | |
| [see RFC] FEATURE_SIGNAL_FILE_NAME | Reference to a common FEATURE_SIGNAL_FILE | |
| [see RFC] GENE_NAME | Gene name or some other common identifier | |
| [see RFC] HI_FILTER_SIZE | The largest filter used to stratify an environmental sample | |
| [see RFC] HOST_CONDITION | The condition of the host from which an environmental sample was obtained | |
| [see RFC] HOST_ID | Unique identifier for the specific host from which an environmental sample was taken | |
| [see RFC] HOST_LOCATION | Specific location on the host from which an environmental sample was collected | |
| [see RFC] HOST_SPECIES | The host from which an environmental sample was obtained | |
| [see RFC] INDIVIDUAL_ID | Publicly available identifier to denote a specific individual or sample from which a trace was derived | |
| [see RFC] INSERT_FLANK_LEFT | Left flanking sequence at the cloning junction | |
| [see RFC] INSERT_FLANK_RIGHT | Right flanking sequence at the cloning junction | |
| [see RFC] INSERT_SIZE | Expected size of the insert (referred to by the value in the TEMPLATE_ID field) in base pairs | |
| [see RFC] INSERT_STDEV | Approximate standard deviation of value in INSERT_SIZE field | |
| [see RFC] LATITUDE | The latitude measurement (using standard GPS notation) from which a sample was collected | |
| [see RFC] LIBRARY_ID | The source of the clone identified in the CLONE_ID field | |
| [see RFC] LONGITUDE | The longitude measurement (using standard GPS notation) from which a sample was collected | |
| [see RFC] LO_FILTER_SIZE | The smallest filter size used to stratify an environmental sample | |
| [see RFC] NCBI_PROJECT_ID | Project ID generated by the Genome Project database at NCBI/NLM/NIH | |
| [see RFC] ORGANISM_NAME | Description of species for BARCODE project from which trace is derived | |
| [see RFC] PH | The pH at which an environmental sample was collected | |
| [see RFC] PICK_GROUP_ID | Id to group traces picked at the same time | |
| [see RFC] PLACE_NAME | Country in which the biological sample was collected and/or common name for a given location | |
| [see RFC] PLATE_ID | Submitter defined plate id | |
| [see RFC] POPULATION_ID | Center provided id to designate a population from which a trace (or group of traces) was derived | |
| [see RFC] PREP_GROUP_ID | Id to group traces prepared at the same time | |
| [see RFC] PRIMER | The primer sequence (used in the sequencing reaction) | |
| [see RFC] PRIMER_CODE | Identifier for the sequencing primer used | |
| [see RFC] PROGRAM_ID | The program used to create the trace file | |
| [see RFC] PROJECT_NAME | Term by which to group traces based on a common project. | |
| [see RFC] REFERENCE_ACCESSION | Reference accession (use accession and version to specify a particular instance of a sequence) used as the basis for a re-sequencing project. In case of Comparative strategy show the basis for primers design | |
| [see RFC] REFERENCE_ACC_MAX | Finish position for a particular amplicon in re-sequencing or comparative projects | |
| [see RFC] REFERENCE_ACC_MIN | Start position for a particular amplicon in re-sequencing or comparative projects | |
| [see RFC] REFERENCE_SET_MAX | Finish position for a entire re-sequencing region. This region may include several amplicons | |
| [see RFC] REFERENCE_SET_MIN | Start position for a entire re-sequencing region. This region may include several amplicons | |
| [see RFC] RUN_DATE | Date the sequencing reaction was run | |
| [see RFC] RUN_GROUP_ID | Id to group traces run on the same machine | |
| [see RFC] RUN_LANE | Lane or capillary of the trace | |
| [see RFC] RUN_MACHINE_ID | ID of the specific sequencing machine on which a trace was obtained | |
| [see RFC] RUN_MACHINE_TYPE | Type or model of machine on which a trace was obtained | |
| [see RFC] SALINITY | The salinity at which an environmental sample was collected measured in parts per thousand units (promille) | |
| [see RFC] SEQ_LIB_ID | Center specified M13/PUC library that is actually sequenced | |
| [see RFC] SOURCE_TYPE | Source of the DNA | |
| [see RFC] SPECIES_CODE | Description of species from which trace is derived | |
| [see RFC] STRAIN | Strain from which a trace is derived | |
| [see RFC] STRATEGY | Experimental STRATEGY | |
| [see RFC] SUBMISSION_TYPE | Type of submission: new, update... | |
| [see RFC] SVECTOR_ACCESSION | GenBank/EMBL/DDBJ accession of the sequencing vector | |
| [see RFC] SVECTOR_CODE | Center defined code for the sequencing vector | |
| [see RFC] TEMPERATURE | The temperature (in oC) at which an environmental sample was collected | |
| [see RFC] TEMPLATE_ID | Submitter defined identifier for the sequencing template | |
| [see RFC] TRACE_END | Defines the end of the template contained in the read | |
| [see RFC] TRACE_FILE | Filename with the trace | |
| [see RFC] TRACE_FORMAT | Format of the trace file (scf, abi...) | |
| [see RFC] TRACE_TYPE_CODE | Sequencing strategy by which the trace was obtained | |
| [see RFC] TRANSPOSON_ACC | GenBank/EMBL/DDBJ accession for transposon used in generating sequencing template | |
| [see RFC] TRANSPOSON_CODE | Center defined code for transposon used in generating sequencing template | |
| [see RFC] WELL_ID | Center defined well identifier for the sequencing reaction | |