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CCAP BAC Clones

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Chromosome 19


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
19p13.3e RP11-268O21 chr19 2Mb AQ490667 SP6,
AQ490670 T7
AC024721 
19p13.3a RP11-565J3 chr19 5Mb CL423256 T7 AC021165 
19p13.2d RP11-1137G4 chr19 6Mb AQ733707 T7+ AC025278 
19p13.2a RP11-197O4 chr19 10Mb CL423283 SP6,
CL423288 T7
AC024182 
19p13.12c CTD-3252C9 chr19 13Mb   AC020916 
19p13.12a RP11-737I1 chr19 15Mb   AC068845 
19p13.11e RP11-413M18 chr19 16Mb CL423226 SP6,
CL423232 T7
AC021138 
19p13.11d CTD-3149D2 chr19 17Mb AQ805530 SP6+ AC008761 
19p12b~12c RP11-678G14 chr19 21Mb   AC123912 
19p12b RP11-157B13 chr19 22Mb AQ373544 T7,
AQ373542 SP6
AC020700,
AC073539
SHGC-34357+
19p12a CTB-28I9 chr19 23Mb   AC011493 
19q12b RP11-17N20 chr19 35Mb B82808 T7+,
B82807 SP6
AC011883 
19q12c RP11-14D17 chr19 36Mb B82262 SP6,
B87955 T7
AC011590 
19q13.11b RP11-31D10 chr19 39Mb AQ046108,
AQ081490
AC018791 
19q13.12b RP11-44B13 chr19 42Mb AQ203056,
AQ203055
AC009194 
19q13.12c RP11-9B17 chr19 42Mb B72490 SP6+,
B72491 T7
AC007676 
19q13.31a RP11-46C6 chr19 48Mb AQ199858,
CL423261 T7,
CL423257 SP6,
AQ199854
AC068785 AA425139
19q13.31b RP11-21J15 chr19 49Mb B85964 SP6,
B85965 T7
AC013814 AFM329WH1
19q13.32b RP11-43N16 chr19 52Mb   AC073548,
AC087454
AFMA133ZH9
19q13.33b RP11-50I11 chr19 54Mb AQ115178,
CL423293 T7,
CL423289 SP6,
AQ053110
AC068786 AA489700
19q13.41a RP11-795B6 chr19 55Mb AQ467977 T7+,
AQ492749 SP6+
AC027602 
19q13.41b RP11-44L20 chr19 58Mb AQ203126,
AQ203125
AC015589 
19q13.42c~13.43b RP11-45K21 chr19 61Mb AQ200180,
AQ200181
AC012107 
19q13.43b~13.43c RP11-420P11 chr19 63Mb AQ550064 T7 AC009763 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


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