CGAP       the Cancer Genome Anatomy Project
Skip Main Navigation
    CGAP HOW TO GenesChromosomesTissuesSAGERNAiPathwaysTools  

Chromosomes

Tools

Purchase CGAP Reagents

Related Links

Quick Links:

NCI Logo


CCAP BAC Clones

1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y 

Chromosome 18


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
18p11.32c RP11-88C10 chr18 0Mb CG734315 T7,
BZ749196 SP6,
CG734314 SP6
  14236+,
45002+,
AFM016YC5+,
AFM016YC5+,
AFM178XC3+,
AFM178XC3
18p11.32a~11.32b RP11-78H1 chr18 2Mb AQ286480 T7,
AQ286478 SP6
  AFM299YF1+,
AFM299YF1
18p11.32a RP11-55N14 chr18 2Mb AQ082341,
AQ115890
AC015958 AFMA175YE9
18p11.31e~11.32a RP11-106J7 chr18 3Mb BZ749026 T7+,
AQ317978 T7,
AQ317975 SP6,
BZ749025 SP6
AC015945 AFM205TD6,
D18S63
18p11.31e RP11-106O1 chr18 3Mb CG734316 SP6,
CG734317 T7
  AFM080XD7+,
AFM080XD7
18p11.31d RP11-113J12 chr18 3Mb AQ343331 SP6,
AQ343333 T7
  AFM238YD8+,
AFM238YD8
18p11.31d~11.31c RP11-102E12 chr18 4Mb AQ312325 SP6,
AQ312328 T7
  AFMB329WD5
18p11.31c RP11-105C15 chr18 5Mb AQ316136 SP6,
AQ316138 T7
  AFM283XG9
18p11.22c RP11-102O20 chr18 9Mb AQ313383 T7,
AQ313380 SP6
  AFM259VH9+,
AFM259VH9
18p11.22b~11.22c RP11-67I20 chr18 9Mb BZ749177 T7,
AQ239191 T7,
CG734255 T7,
CG734254 SP6
  AFMA054YG9
18p11.22b RP11-24G5 chr18 10Mb B84417 SP6,
AQ013368,
B84418 T7
  AFMA053WD1
18p11.22a RP11-7E5 chr18 10Mb BZ749185 T7,
BZ749184 SP6
AC016067+ D18S1158
18p11.21e RP11-151D11 chr18 13Mb AQ378182 SP6,
BZ749045 SP6,
BZ749046 T7
  AFM266WA5+,
AFM266WA5
18p11.21b RP11-16A21 chr18 12Mb BZ749051 SP6,
BZ749052 T7
  AFM254YD5+,
AFM254YD5
18p11.21a RP11-96I11 chr18 12Mb AQ317713 SP6+,
BZ749202 SP6,
BZ749203 T7
  AFM214XD2
18q11.2c RP11-10G8 chr18 17Mb B71705 SP6,
B71706 T7
  AFMA052YG1
18q11.2d RP11-59E12 chr18 19Mb BZ749165 T7,
AQ198120,
BZ749164 SP6,
AQ198117
  AFM164ZC1
18q12.1b RP11-111H24 chr18 23Mb AQ319809 SP6,
AQ342030 T7
  AFMA054TD1
18q12.1e RP11-19F14 chr18 28Mb B82984 T7,
CG734319 T7,
CG734318 SP6,
BZ749080 SP6
  AFM238VB6+,
AFM238VB6
18q12.1g RP11-63N12 chr18 30Mb AQ238540 T7,
AQ238539 SP6
  AFMC006XF1
18q12.2b~12.2c RP11-90B5 chr18 32Mb AQ283417 SP6,
AZ517972 T7,
AQ283420 T7
  AFMA099ZD1
18q12.2d RP11-104N11 chr18 33Mb AQ314013 T7,
AQ314010 SP6
  AFM298WF9+,
AFM298WF9
18q12.3b RP11-265I6 chr18 35Mb AQ491099 T7,
AQ491097 SP6
  AFMA074YD9
18q21.1a~21.1b RP11-19L3 chr18 42Mb BZ749082 T7,
BZ749081 SP6
  AFM256VD5+,
AFM256VD5
18q21.1d~21.1e RP11-20H17 chr18 44Mb B88779 SP6,
B85661 T7
  AFMB043WG1
18q21.1g RP11-43K24 chr18 45Mb AQ199571,
BZ749134 T7,
BZ749133 SP6,
AQ199570
  AFM046XF6+,
AFM292WG1
18q21.2d RP11-160B24 chr18 51Mb AQ377611 T7,
CG734321 T7,
CG734320 SP6
  AFM248YF1+,
AFM248YF1
18q21.31a~21.31b RP11-153B11 chr18 52Mb AQ387999 SP6,
AQ388001 T7
  AFMA054YG5
18q21.31~21.32 RP11-4G8 chr18 54Mb B48040 SP6,
CG734256 T7,
BZ749144 T7
  AFMB317ZC1
18q21.32a RP11-12J12 chr18 55Mb B75846 SP6,
BZ749032 SP6,
BZ749033 T7
  AFMA337WC9
18q21.32b~21.32c RP11-40D15 chr18 56Mb CG734258 T7,
BZ749130 T7,
CG734257 SP6
  AFMB330ZC5
18q21.32c~21.33a RP11-15C15 chr18 57Mb BZ749047 SP6,
BZ749048 T7,
B76365 T7
  AFMA052VA9
18q21.33b RP11-75O12 chr18 59Mb AQ268212 T7,
AQ268209 SP6
  AFM248YB9+,
AFM248YB9
18q22.1b~22.1c RP11-3K7 chr18 61Mb B47942 T7,
B47941 SP6
AC010782+ AFM324WC9+,
AFM324WC9
18q22.1e~22.1f RP11-105L16 chr18 64Mb AQ319765 SP6,
AQ319768 T7
  AFM094YE5
18q22.2 RP11-49H23 chr18 64Mb AQ053059,
BZ749141 T7,
BZ749140 SP6,
AQ060575
  AFMB326XG9
18q22.3a~22.3b RP11-57F7 chr18 66Mb AQ115997,
BZ749158 SP6,
BZ749159 T7,
AQ115996
  AFMB304YB9
18q22.3c~22.3d RP11-53N15 chr18 70Mb AQ051927+,
BZ749153 T7,
BZ749152 SP6
  AFM164XE3+,
AFM164XE3
18q23b RP11-61A18 chr18 72Mb AQ200841,
BZ749171 T7,
BZ749170 SP6,
AQ200845
  AFMA037ZC9
18q23b~23c RP11-4B17 chr18 72Mb B48936 T7+,
B48935 SP6
  AFM029XC9
18q23c RP11-130J1 chr18 73Mb BZ749038 SP6,
BZ749039 T7
  AFMB015XF5
18q23c~23d RP11-7H17 chr18 75Mb B72057 SP6,
AZ520043 T7
  AFMA131WH5
18q23d RP11-87C15 chr18 75Mb BZ749195 T7,
BZ749194 SP6
  AFM254VD5+,
AFM254VD5

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


If you have any questions, comments, or need information about CGAP, please contact the NCI CGAP Help Desk.