| | Research Articles The p53 Tumor Suppressor-Like Protein nvp63 Mediates Selective Germ Cell Death in the Sea Anemone Nematostella vectensis Sandra Pankow and Casimir Bamberger PMCID: PMC1964547 Sp1 Expression Is Disrupted in Schizophrenia; A Possible Mechanism for the Abnormal Expression of Mitochondrial Complex I Genes, NDUFV1 and NDUFV2 Dorit Ben-Shachar and Rachel Karry PMCID: PMC1950689 CD100 on NK Cells Enhance IFNγ Secretion and Killing of Target Cells Expressing CD72 Sa'ar Mizrahi, Gal Markel, Angel Porgador, Yuri Bushkin, and Ofer Mandelboim PMCID: PMC1950564 rs1004819 Is the Main Disease-Associated IL23R Variant in German Crohn's Disease Patients: Combined Analysis of IL23R, CARD15, and OCTN1/2 Variants Jürgen Glas, Julia Seiderer, Martin Wetzke, Astrid Konrad, Helga-Paula Török, Silke Schmechel, Laurian Tonenchi, Christine Grassl, Julia Dambacher, Simone Pfennig, Kerstin Maier, Thomas Griga, Wolfram Klein, Jörg T. Epplen, Uwe Schiemann, Christian Folwaczny, Peter Lohse, Burkhard Göke, Thomas Ochsenkühn, Bertram Müller-Myhsok, Matthias Folwaczny, Thomas Mussack, and Stephan Brand PMCID: PMC1950565 Preference of Small Molecules for Local Minimum Conformations when Binding to Proteins Qi Wang and Yuan-Ping Pang PMCID: PMC1959118 Rapid Maturation of Effector T Cells in Tumors, but Not Lymphoid Organs, during Tumor Regression Lyse A. Norian and Paul M. Allen PMCID: PMC1950566 An Outbreak of Severe Infections with Community-Acquired MRSA Carrying the Panton-Valentine Leukocidin Following Vaccination Tang Chi Thuong, Nguyen Dac Tho, Ngo Thi Hoa, Nguyen Thi Minh Phuong, Le Van Tuan, To Song Diep, Jodi Lindsay, Nguyen The Dung, Bach Van Cam, Le Quoc Thinh, Le Thanh Hai, Le Dieu Linh, James Campbell, Nguyen Thi Kim Tien, Nguyen Van Vinh Chau, Joshua Cockfield, Le Truong Giang, Phan Van Nghiem, Le Hoang Son, Huynh Tan Son, Le Van Phung, Megan Counahan, Adwoa Bentsi-Enchill, Richard Brown, James Simmerman, Nguyen Tran Chinh, Tran Tinh Hien, Jeremy Farrar, and Constance Schultsz PMCID: PMC1950567 Recognition of HIV-1 Peptides by Host CTL Is Related to HIV-1 Similarity to Human Proteins Morgane Rolland, David C. Nickle, Wenjie Deng, Nicole Frahm, Christian Brander, Gerald H. Learn, David Heckerman, Nebosja Jojic, Vladimir Jojic, Bruce D. Walker, and James I. Mullins PMCID: PMC1952107 Malaria in Africa: Vector Species' Niche Models and Relative Risk Maps Alexander Moffett, Nancy Shackelford, and Sahotra Sarkar PMCID: PMC1950570 A Genetic Basis of Susceptibility to Acute Pyelonephritis Ann-Charlotte Lundstedt, Shane McCarthy, Mattias C.U. Gustafsson, Gabriela Godaly, Ulf Jodal, Diana Karpman, Irene Leijonhufvud, Carin Lindén, Jeanette Martinell, Bryndis Ragnarsdottir, Martin Samuelsson, Lennart Truedsson, Björn Andersson, and Catharina Svanborg PMCID: PMC1950574 Impact of Antiretroviral Therapy on the Incidence of Tuberculosis: The Brazilian Experience, 1995–2001 Abraham Miranda, Meade Morgan, Leda Jamal, Kayla Laserson, Draurio Barreira, Guida Silva, Joseney Santos, Charles Wells, Patricia Paine, and Denise Garrett PMCID: PMC1952142 Arterial Response to Shear Stress Critically Depends on Endothelial TRPV4 Expression Veronika Hartmannsgruber, Willm-Thomas Heyken, Michael Kacik, Anuradha Kaistha, Ivica Grgic, Christian Harteneck, Wolfgang Liedtke, Joachim Hoyer, and Ralf Köhler PMCID: PMC1959246 Regulation of Retention of FosB Intron 4 by PTB Victor Marinescu, Patricia A. Loomis, Svetlana Ehmann, Mitchell Beales, and Judith A. Potashkin PMCID: PMC1952174 Beringian Standstill and Spread of Native American Founders Erika Tamm, Toomas Kivisild, Maere Reidla, Mait Metspalu, David Glenn Smith, Connie J. Mulligan, Claudio M. Bravi, Olga Rickards, Cristina Martinez-Labarga, Elsa K. Khusnutdinova, Sardana A. Fedorova, Maria V. Golubenko, Vadim A. Stepanov, Marina A. Gubina, Sergey I. Zhadanov, Ludmila P. Ossipova, Larisa Damba, Mikhail I. Voevoda, Jose E. Dipierri, Richard Villems, and Ripan S. Malhi PMCID: PMC1952074 Divide and Conquer: Enriching Environmental Sequencing Data Anne Bergeron, Mahdi Belcaid, Grieg F. Steward, and Guylaine Poisson PMCID: PMC1952108 Studying Seabird Diet through Genetic Analysis of Faeces: A Case Study on Macaroni Penguins (Eudyptes chrysolophus) Bruce E. Deagle, Nick J. Gales, Karen Evans, Simon N. Jarman, Sarah Robinson, Rowan Trebilco, and Mark A. Hindell PMCID: PMC1959119 Polymorphisms within Novel Risk Loci for Type 2 Diabetes Determine β-Cell Function Harald Staiger, Fausto Machicao, Norbert Stefan, Otto Tschritter, Claus Thamer, Konstantinos Kantartzis, Silke A. Schäfer, Kerstin Kirchhoff, Andreas Fritsche, and Hans-Ulrich Häring PMCID: PMC1952072 Differential Requirements for MCM Proteins in DNA Replication in Drosophila S2 Cells Gilles Crevel, Reina Hashimoto, Sharron Vass, Jake Sherkow, Masamitsu Yamaguchi, Margarete M.S. Heck, and Sue Cotterill PMCID: PMC1950684 Three-Dimensional Imaging of Drosophila melanogaster Leeanne McGurk, Harris Morrison, Liam P. Keegan, James Sharpe, and Mary A. O'Connell PMCID: PMC1952176 The Chop Gene Contains an Element for the Positive Regulation of the Mitochondrial Unfolded Protein Response Tomohisa Horibe and Nicholas J. Hoogenraad PMCID: PMC1950685 Disruption of Retinoic Acid Receptor Alpha Reveals the Growth Promoter Face of Retinoic Acid Giulia Somenzi, Giusy Sala, Stefano Rossetti, MingQiang Ren, Riccardo Ghidoni, and Nicoletta Sacchi PMCID: PMC1959242 GSK-3β Controls Osteogenesis through Regulating Runx2 Activity Fumitaka Kugimiya, Hiroshi Kawaguchi, Shinsuke Ohba, Naohiro Kawamura, Makoto Hirata, Hirotaka Chikuda, Yoshiaki Azuma, James R. Woodgett, Kozo Nakamura, and Ung-il Chung PMCID: PMC1950686 CCR5 Haplotypes and Mother-to-Child HIV Transmission in Malawi Bonnie R. Pedersen, Deborah Kamwendo, Melinda Blood, Victor Mwapasa, Malcolm Molyneux, Kari North, Stephen J. Rogerson, Peter Zimmerman, and Steven R. Meshnick PMCID: PMC1950791 Blindness Caused by Deficiency in AE3 Chloride/Bicarbonate Exchanger Bernardo V. Alvarez, Gregory S. Gilmour, Silvina C. Mema, Brent T. Martin, Gary E. Shull, Joseph R. Casey, and Yves Sauvé PMCID: PMC1950688 The Tell-Tale Heart: Population-Based Surveillance Reveals an Association of Rofecoxib and Celecoxib with Myocardial Infarction John S. Brownstein, Margarita Sordo, Isaac S. Kohane, and Kenneth D. Mandl PMCID: PMC1950690 Heterogeneity in Meta-Analyses of Genome-Wide Association Investigations John P.A. Ioannidis, Nikolaos A. Patsopoulos, and Evangelos Evangelou PMCID: PMC1950790 Identification of a Guanine Nucleotide Exchange Factor for Arf3, the Yeast Orthologue of Mammalian Arf6 Alison K. Gillingham and Sean Munro PMCID: PMC1950683 Enhanced Astrocytic Nitric Oxide Production and Neuronal Modifications in the Neocortex of a NOS2 Mutant Mouse Yossi Buskila, Yasmin Abu-Ghanem, Yifat Levi, Arie Moran, Ettie Grauer, and Yael Amitai PMCID: PMC1952109 The N-Myc Down Regulated Gene1 (NDRG1) Is a Rab4a Effector Involved in Vesicular Recycling of E-Cadherin Sushant K. Kachhap, Dennis Faith, David Z. Qian, Shabana Shabbeer, Nathan L. Galloway, Roberto Pili, Samuel R. Denmeade, Angelo M. DeMarzo, and Michael A. Carducci PMCID: PMC1952073 The H19 Non-Coding RNA Is Essential for Human Tumor Growth Imad J. Matouk, Nathan DeGroot, Shaul Mezan, Suhail Ayesh, Rasha Abu-lail, Abraham Hochberg, and Eithan Galun PMCID: PMC1959184 Host-Plant Selectivity of Rhizobacteria in a Crop/Weed Model System Simon L. Zeller, Helmut Brandl, and Bernhard Schmid PMCID: PMC1952140 Large Scale Comparative Codon-Pair Context Analysis Unveils General Rules that Fine-Tune Evolution of mRNA Primary Structure Gabriela Moura, Miguel Pinheiro, Joel Arrais, Ana Cristina Gomes, Laura Carreto, Adelaide Freitas, José L. Oliveira, and Manuel A. S. Santos PMCID: PMC1952141 Parallel Driving and Modulatory Pathways Link the Prefrontal Cortex and Thalamus Basilis Zikopoulos and Helen Barbas PMCID: PMC1952177 Segmental Duplication Implicated in the Genesis of Inversion 2Rj of Anopheles gambiae Mamadou B. Coulibaly, Neil F. Lobo, Meagan C. Fitzpatrick, Marcia Kern, Olga Grushko, Daniel V. Thaner, Sékou F. Traoré, Frank H. Collins, and Nora J. Besansky PMCID: PMC1952172 Human Immunity and the Design of Multi-Component, Single Target Vaccines Allan Saul and Michael P. Fay PMCID: PMC1952173 Late Endosomal Cholesterol Accumulation Leads to Impaired Intra-Endosomal Trafficking Komla Sobo, Isabelle Le Blanc, Pierre-Philippe Luyet, Marc Fivaz, Charles Ferguson, Robert G. Parton, Jean Gruenberg, and F. Gisou van der Goot PMCID: PMC1952175 Plants Attract Parasitic Wasps to Defend Themselves against Insect Pests by Releasing Hexenol Jianing Wei, Lizhong Wang, Junwei Zhu, Sufang Zhang, Owi I. Nandi, and Le Kang PMCID: PMC1955833 Targeted Deletion of HIF-1α Gene in T Cells Prevents their Inhibition in Hypoxic Inflamed Tissues and Improves Septic Mice Survival Manfred Thiel, Charles C. Caldwell, Simone Kreth, Satoshi Kuboki, P. Chen, Patrick Smith, Akio Ohta, Alex B. Lentsch, Dmitry Lukashev, and Michail V. Sitkovsky PMCID: PMC1959117 Deletion of the N-terminus of SF2/ASF Permits RS-Domain-Independent Pre-mRNA Splicing Stephanie D. Shaw, Sutapa Chakrabarti, Gourisankar Ghosh, and Adrian R. Krainer PMCID: PMC1952110 Is Transcriptional Regulation of Metabolic Pathways an Optimal Strategy for Fitness? Carl Troein, Dag Ahrén, Morten Krogh, and Carsten Peterson PMCID: PMC1959122 Liposome-Mediated Cellular Delivery of Active gp91phox Bruno Marques, Lavinia Liguori, Marie-Hélène Paclet, Ana Villegas-Mendéz, Romy Rothe, Françoise Morel, and Jean-Luc Lenormand PMCID: PMC1955831 Linkage Group Selection: Towards Identifying Genes Controlling Strain Specific Protective Immunity in Malaria Sittiporn Pattaradilokrat, Sandra J. Cheesman, and Richard Carter PMCID: PMC1959240 Structural and Functional Analyses of Five Conserved Positively Charged Residues in the L1 and N-Terminal DNA Binding Motifs of Archaeal RadA Protein Li-Tzu Chen, Tzu-Ping Ko, Yu-Wei Chang, Kuei-An Lin, Andrew H.-J. Wang, and Ting-Fang Wang PMCID: PMC1964548 Intraepithelial and Interstitial Deposition of Pathological Prion Protein in Kidneys of Scrapie-Affected Sheep Ciriaco Ligios, Giovanna Maria Cancedda, Ilan Margalith, Cinzia Santucciu, Laura Madau, Caterina Maestrale, Massimo Basagni, Mariangela Saba, and Mathias Heikenwalder PMCID: PMC1964536 Early Loss of Xist RNA Expression and Inactive X Chromosome Associated Chromatin Modification in Developing Primordial Germ Cells Mariana de Napoles, Tatyana Nesterova, and Neil Brockdorff PMCID: PMC1959243 Declining Rates in Male Circumcision amidst Increasing Evidence of its Public Health Benefit Zohar Mor, Charlotte K. Kent, Robert P. Kohn, and Jeffrey D. Klausner PMCID: PMC1955830 A Fully Automated Robotic System for Microinjection of Zebrafish Embryos Wenhui Wang, Xinyu Liu, Danielle Gelinas, Brian Ciruna, and Yu Sun PMCID: PMC1959247 Toll-Like Receptor Expression and Responsiveness of Distinct Murine Splenic and Mucosal B-Cell Subsets Murali Gururajan, Joshy Jacob, and Bali Pulendran PMCID: PMC1955832 An Amphioxus Gli Gene Reveals Conservation of Midline Patterning and the Evolution of Hedgehog Signalling Diversity in Chordates Sebastian M. Shimeld, Marcel van den Heuvel, Rebecca Dawber, and James Briscoe PMCID: PMC1955834 Nonassociative Learning Promotes Respiratory Entrainment to Mechanical Ventilation Shawna M. MacDonald, Gang Song, and Chi-Sang Poon PMCID: PMC1959120 Ubx Regulates Differential Enlargement and Diversification of Insect Hind Legs Najmus Mahfooz, Nataliya Turchyn, Michelle Mihajlovic, Steven Hrycaj, and Aleksandar Popadić PMCID: PMC1959121 Sleep in the Human Hippocampus: A Stereo-EEG Study Fabio Moroni, Lino Nobili, Giuseppe Curcio, Fabrizio De Carli, Fabiana Fratello, Cristina Marzano, Luigi De Gennaro, Franco Ferrillo, Massimo Cossu, Stefano Francione, Giorgio Lo Russo, Mario Bertini, and Michele Ferrara PMCID: PMC1959185 Successful Biological Invasion despite a Severe Genetic Load Amro Zayed, Şerban A. Constantin, and Laurence Packer PMCID: PMC1964518 Control of Axonal Growth and Regeneration of Sensory Neurons by the p110δ PI 3-Kinase Britta J. Eickholt, Aminul I. Ahmed, Meirion Davies, Evangelia A. Papakonstanti, Wayne Pearce, Michelle L. Starkey, Antonio Bilancio, Anna C. Need, Andrew J. H. Smith, Susan M. Hall, Frank P. Hamers, Karl P. Giese, Elizabeth J. Bradbury, and Bart Vanhaesebroeck PMCID: PMC1959241 Crown Plasticity and Competition for Canopy Space: A New Spatially Implicit Model Parameterized for 250 North American Tree Species Drew W. Purves, Jeremy W. Lichstein, and Stephen W. Pacala PMCID: PMC1964803 Retinal Encoding of Ultrabrief Shape Recognition Cues Ernest Greene PMCID: PMC1959244 Conceptual Modeling in Systems Biology Fosters Empirical Findings: The mRNA Lifecycle Dov Dori and Mordechai Choder PMCID: PMC1964809 Brain Expressed microRNAs Implicated in Schizophrenia Etiology Thomas Hansen, Line Olsen, Morten Lindow, Klaus D. Jakobsen, Henrik Ullum, Erik Jonsson, Ole A. Andreassen, Srdjan Djurovic, Ingrid Melle, Ingrid Agartz, Håkan Hall, Sally Timm, August G. Wang, and Thomas Werge PMCID: PMC1964806 Discovery of Genes Activated by the Mitochondrial Unfolded Protein Response (mtUPR) and Cognate Promoter Elements Jonathan E. Aldridge, Tomohisa Horibe, and Nicholas J. Hoogenraad PMCID: PMC1964532 Potential Impact of Antiretroviral Chemoprophylaxis on HIV-1 Transmission in Resource-Limited Settings Ume L. Abbas, Roy M. Anderson, and John W. Mellors PMCID: PMC1975470 Intra-Organ Variation in Age-Related Mutation Accumulation in the Mouse Rita A. Busuttil, Ana Maria Garcia, Robert L. Reddick, Martijn E. T. Dollé, Robert B. Calder, James F. Nelson, and Jan Vijg PMCID: PMC1964533 An All-Atom Model of the Chromatin Fiber Containing Linker Histones Reveals a Versatile Structure Tuned by the Nucleosomal Repeat Length Hua Wong, Jean-Marc Victor, and Julien Mozziconacci PMCID: PMC1963316 Comparative Expression Profiling of the Chlamydia trachomatis pmp Gene Family for Clinical and Reference Strains Alexandra Nunes, João P. Gomes, Sally Mead, Carlos Florindo, Helena Correia, Maria J. Borrego, and Deborah Dean PMCID: PMC1963315 Dating Phylogenies with Hybrid Local Molecular Clocks Stéphane Aris-Brosou PMCID: PMC1964517 Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations Sunhwan Jo, Taehoon Kim, and Wonpil Im PMCID: PMC1963319 Metabolome Based Reaction Graphs of M. tuberculosis and M. leprae: A Comparative Network Analysis Ketki D. Verkhedkar, Karthik Raman, Nagasuma R. Chandra, and Saraswathi Vishveshwara PMCID: PMC1964534 Role of ENPP1 on Adipocyte Maturation Jian Liang, Mingui Fu, Ester Ciociola, Manisha Chandalia, and Nicola Abate PMCID: PMC1964519 Self-Referential Cognition and Empathy in Autism Michael V. Lombardo, Jennifer L. Barnes, Sally J. Wheelwright, and Simon Baron-Cohen PMCID: PMC1964804 Degeneration of the Olfactory Guanylyl Cyclase D Gene during Primate Evolution Janet M. Young, Hang Waters, Cora Dong, Hans-Jürgen Fülle, and Emily R. Liman PMCID: PMC1964805 Molecular and Structural Discrimination of Proline Racemase and Hydroxyproline-2-Epimerase from Nosocomial and Bacterial Pathogens Maira Goytia, Nathalie Chamond, Alain Cosson, Nicolas Coatnoan, Daniel Hermant, Armand Berneman, and Paola Minoprio PMCID: PMC1964878 Chimpanzees Share Forbidden Fruit Kimberley J. Hockings, Tatyana Humle, James R. Anderson, Dora Biro, Claudia Sousa, Gaku Ohashi, and Tetsuro Matsuzawa PMCID: PMC1964537 Age- and Sex-Specific Mortality Patterns in an Emerging Wildlife Epidemic: The Phocine Distemper in European Harbour Seals Tero Härkönen, Karin Harding, Thomas Dau Rasmussen, Jonas Teilmann, and Rune Dietz PMCID: PMC1964516 Robust Off- and Online Separation of Intracellularly Recorded Up and Down Cortical States Yamina Seamari, José A. Narváez, Francisco J. Vico, Daniel Lobo, and Maria V. Sanchez-Vives PMCID: PMC1964538 Impedance-Matching Hearing in Paleozoic Reptiles: Evidence of Advanced Sensory Perception at an Early Stage of Amniote Evolution Johannes Müller and Linda A. Tsuji PMCID: PMC1964539 Cross-Modal Object Recognition Is Viewpoint-Independent Simon Lacey, Andrew Peters, and K. Sathian PMCID: PMC1964535 No Language-Specific Activation during Linguistic Processing of Observed Actions Ingo G. Meister and Marco Iacoboni PMCID: PMC1963318 Evidence for Paternal Leakage in Hybrid Periodical Cicadas (Hemiptera: Magicicada spp.) Kathryn M. Fontaine, John R. Cooley, and Chris Simon PMCID: PMC1963320 The Restriction of Zoonotic PERV Transmission by Human APOBEC3G Stefán R. Jónsson, Rebecca S. LaRue, Mark D. Stenglein, Scott C. Fahrenkrug, Valgerdur Andrésdóttir, and Reuben S. Harris PMCID: PMC1963317 Early Evolution of Ionotropic GABA Receptors and Selective Regimes Acting on the Mammalian-Specific Theta and Epsilon Subunits Christopher J. Martyniuk, Stéphane Aris-Brosou, Guy Drouin, Joel Cahn, and Vance L. Trudeau PMCID: PMC1975676 DNA Methylation in the Human Cerebral Cortex Is Dynamically Regulated throughout the Life Span and Involves Differentiated Neurons Kimberly D. Siegmund, Caroline M. Connor, Mihaela Campan, Tiffany I. Long, Daniel J. Weisenberger, Detlev Biniszkiewicz, Rudolf Jaenisch, Peter W. Laird, and Schahram Akbarian PMCID: PMC1964879 Immunological Change in a Parasite-Impoverished Environment: Divergent Signals from Four Island Taxa Jon S. Beadell, Colm Atkins, Erin Cashion, Michelle Jonker, and Robert C. Fleischer PMCID: PMC1975468 Only Half Right: Species with Female-Biased Sexual Size Dimorphism Consistently Break Rensch's Rule Thomas J. Webb and Robert P. Freckleton PMCID: PMC1964802 Evidence Based Selection of Housekeeping Genes Hendrik J. M. de Jonge, Rudolf S. N. Fehrmann, Eveline S. J. M. de Bont, Robert M. W. Hofstra, Frans Gerbens, Willem A. Kamps, Elisabeth G. E. de Vries, Ate G. J. van der Zee, Gerard J. te Meerman, and Arja ter Elst PMCID: PMC1976390 Post-Exposure Vaccination Improves Gammaherpesvirus Neutralization Laurent Gillet, Janet S. May, and Philip G. Stevenson PMCID: PMC1964807 Accelerated FoxP2 Evolution in Echolocating Bats Gang Li, Jinhong Wang, Stephen J. Rossiter, Gareth Jones, and Shuyi Zhang PMCID: PMC1976393 Living with the Past: Nutritional Stress in Juvenile Males Has Immediate Effects on their Plumage Ornaments and on Adult Attractiveness in Zebra Finches Marc Naguib and Andrea Nemitz PMCID: PMC1975674 Basonuclin Regulates a Subset of Ribosomal RNA Genes in HaCaT Cells Shengliang Zhang, Junwen Wang, and Hung Tseng PMCID: PMC1975673 Gain-of-Function R225W Mutation in Human AMPKγ3 Causing Increased Glycogen and Decreased Triglyceride in Skeletal Muscle Sheila R. Costford, Nihan Kavaslar, Nadav Ahituv, Shehla N. Chaudhry, Wendy S. Schackwitz, Robert Dent, Len A. Pennacchio, Ruth McPherson, and Mary-Ellen Harper PMCID: PMC1964808 Comparative Genomics of Bordetella pertussis Reveals Progressive Gene Loss in Finnish Strains Eriikka Heikkinen, Teemu Kallonen, Lilli Saarinen, Rolf Sara, Audrey J. King, Frits R. Mooi, Juhani T. Soini, Jussi Mertsola, and Qiushui He PMCID: PMC1975675 Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding Wayne K. Dawson, Kazuya Fujiwara, and Gota Kawai PMCID: PMC1975678 ADAM33, a New Candidate for Psoriasis Susceptibility Fabienne Lesueur, Tiphaine Oudot, Simon Heath, Mario Foglio, Mark Lathrop, Jean-François Prud'homme, and Judith Fischer PMCID: PMC1975467 PET Imaging of Soluble Yttrium-86-Labeled Carbon Nanotubes in Mice Michael R. McDevitt, Debjit Chattopadhyay, Jaspreet S. Jaggi, Ronald D. Finn, Pat B. Zanzonico, Carlos Villa, Diego Rey, Juana Mendenhall, Carl A. Batt, Jon T. Njardarson, and David A. Scheinberg PMCID: PMC1975469 Changes in Tree Reproductive Traits Reduce Functional Diversity in a Fragmented Atlantic Forest Landscape Luciana Coe Girão, Ariadna Valentina Lopes, Marcelo Tabarelli, and Emilio M. Bruna PMCID: PMC1975471 Selective Attention Increases Both Gain and Feature Selectivity of the Human Auditory Cortex Jaakko Kauramäki, Iiro P. Jääskeläinen, and Mikko Sams PMCID: PMC1975472 Disruption of Var2csa Gene Impairs Placental Malaria Associated Adhesion Phenotype Nicola K. Viebig, Emily Levin, Sébastien Dechavanne, Stephen J. Rogerson, Jürg Gysin, Joseph D. Smith, Artur Scherf, and Benoit Gamain PMCID: PMC1975670 Direct Selection on Genetic Robustness Revealed in the Yeast Transcriptome Stephen R. Proulx, Sergey Nuzhdin, and Daniel E. L. Promislow PMCID: PMC1975671 Comparative Analysis of E2F Family Member Oncogenic Activity Chunxia Chen and Andrew D. Wells PMCID: PMC1975672 Experimental Comparison and Evaluation of the Affymetrix Exon and U133Plus2 GeneChip Arrays Diana Abdueva, Michele R. Wing, Betty Schaub, and Timothy J. Triche PMCID: PMC1976394 Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat Ana-Belen Martín-Cuadrado, Purificación López-García, Juan-Carlos Alba, David Moreira, Luis Monticelli, Axel Strittmatter, Gerhard Gottschalk, and Francisco Rodríguez-Valera PMCID: PMC1976395 Connector Inversion Probe Technology: A Powerful One-Primer Multiplex DNA Amplification System for Numerous Scientific Applications Michael S. Akhras, Magnus Unemo, Sreedevi Thiyagarajan, Pål Nyrén, Ronald W. Davis, Andrew Z. Fire, and Nader Pourmand PMCID: PMC1976392 A Multicassette Gateway Vector Set for High Throughput and Comparative Analyses in Ciona and Vertebrate Embryos Agnès Roure, Ute Rothbächer, François Robin, Eva Kalmar, Giustina Ferone, Clément Lamy, Caterina Missero, Ferenc Mueller, and Patrick Lemaire PMCID: PMC1976267 Persistent Infection and Promiscuous Recombination of Multiple Genotypes of an RNA Virus within a Single Host Generate Extensive Diversity Ziming Weng, Roger Barthelson, Siddarame Gowda, Mark E. Hilf, William O. Dawson, David W. Galbraith, and Zhongguo Xiong PMCID: PMC1975466 High Throughput Genetic Analysis of Congenital Myasthenic Syndromes Using Resequencing Microarrays Lisa Denning, Jennifer A. Anderson, Ryan Davis, Jeffrey P. Gregg, Jennifer Kuzdenyi, and Ricardo A. Maselli PMCID: PMC1975473 Naturopathic Care for Chronic Low Back Pain: A Randomized Trial Orest Szczurko, Kieran Cooley, Jason W. Busse, Dugald Seely, Bob Bernhardt, Gordon H. Guyatt, Qi Zhou, and Edward J. Mills PMCID: PMC1976391 HLA Alleles Associated with Slow Progression to AIDS Truly Prefer to Present HIV-1 p24 José A. M. Borghans, Anne Mølgaard, Rob J. de Boer, and Can Keşmir PMCID: PMC1976389 Ribonucleoprotein Assembly Defects Correlate with Spinal Muscular Atrophy Severity and Preferentially Affect a Subset of Spliceosomal snRNPs Francesca Gabanella, Matthew E. R. Butchbach, Luciano Saieva, Claudia Carissimi, Arthur H. M. Burghes, and Livio Pellizzoni PMCID: PMC1976558 Oxytocin in the Circadian Timing of Birth Jeffrey Roizen, Christina E. Luedke, Erik D. Herzog, and Louis J. Muglia PMCID: PMC1976559 Endocytosis of DNA-Hsp65 Alters the pH of the Late Endosome/Lysosome and Interferes with Antigen Presentation Ana Paula F. Trombone, Célio L. Silva, Karla M. Lima, Constance Oliver, Maria Célia Jamur, Alan R. Prescott, and Arlete A. M. Coelho-Castelo PMCID: PMC1976595 Identification of Upper Respiratory Tract Pathogens Using Electrochemical Detection on an Oligonucleotide Microarray Michael J. Lodes, Dominic Suciu, Jodi L. Wilmoth, Marty Ross, Sandra Munro, Kim Dix, Karen Bernards, Axel G. Stöver, Miguel Quintana, Naomi Iihoshi, Wanda J. Lyon, David L. Danley, and Andrew McShea PMCID: PMC1976596 Iron Storage within Dopamine Neurovesicles Revealed by Chemical Nano-Imaging Richard Ortega, Peter Cloetens, Guillaume Devès, Asunción Carmona, and Sylvain Bohic PMCID: PMC1976597 Lactate, Fructose and Glucose Oxidation Profiles in Sports Drinks and the Effect on Exercise Performance John L. Azevedo, Jr., Emily Tietz, Tashena Two-Feathers, Jeff Paull, and Kenneth Chapman PMCID: PMC1976551 Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032 Jason Gioia, Shailaja Yerrapragada, Xiang Qin, Huaiyang Jiang, Okezie C. Igboeli, Donna Muzny, Shannon Dugan-Rocha, Yan Ding, Alicia Hawes, Wen Liu, Lesette Perez, Christie Kovar, Huyen Dinh, Sandra Lee, Lynne Nazareth, Peter Blyth, Michael Holder, Christian Buhay, Madhan R. Tirumalai, Yamei Liu, Indrani Dasgupta, Lina Bokhetache, Masaya Fujita, Fathi Karouia, Prahathees Eswara Moorthy, Johnathan Siefert, Akif Uzman, Prince Buzumbo, Avani Verma, Hiba Zwiya, Brian D. McWilliams, Adeola Olowu, Kenneth D. Clinkenbeard, David Newcombe, Lisa Golebiewski, Joseph F. Petrosino, Wayne L. Nicholson, George E. Fox, Kasthuri Venkateswaran, Sarah K. Highlander, and George M. Weinstock PMCID: PMC1976550 Cultural Diversity, Economic Development and Societal Instability Daniel Nettle, James B. Grace, Marc Choisy, Howard V. Cornell, Jean-François Guégan, and Michael E. Hochberg PMCID: PMC1978457 Neuroadaptations in Human Chronic Alcoholics: Dysregulation of the NF-κB System Anna Ökvist, Sofia Johansson, Alexander Kuzmin, Igor Bazov, Roxana Merino-Martinez, Igor Ponomarev, R. Dayne Mayfield, R. Adron Harris, Donna Sheedy, Therese Garrick, Clive Harper, Yasmin L. Hurd, Lars Terenius, Tomas J. Ekström, Georgy Bakalkin, and Tatjana Yakovleva PMCID: PMC1976556 The Cyclic AMP Cascade Is Altered in the Fragile X Nervous System Daniel J. Kelley, Richard J. Davidson, Jamie L. Elliott, Garet P. Lahvis, Jerry C. P. Yin, and Anita Bhattacharyya PMCID: PMC1976557 Do Haematophagous Bugs Assess Skin Surface Temperature to Detect Blood Vessels? Raquel A. Ferreira, Claudio R. Lazzari, Marcelo G. Lorenzo, and Marcos H. Pereira PMCID: PMC1978521 Differential Association between HERG and KCNE1 or KCNE2 Sung Yon Um and Thomas V. McDonald PMCID: PMC1978535 Global Patterns of City Size Distributions and Their Fundamental Drivers Ethan H. Decker, Andrew J. Kerkhoff, and Melanie E. Moses PMCID: PMC1978523 Digital NFATc2 Activation per Cell Transforms Graded T Cell Receptor Activation into an All-or-None IL-2 Expression Miriam Podtschaske, Uwe Benary, Sandra Zwinger, Thomas Höfer, Andreas Radbruch, and Ria Baumgrass PMCID: PMC1978524 Constraint-Based Modeling and Kinetic Analysis of the Smad Dependent TGF-β Signaling Pathway Zhike Zi and Edda Klipp PMCID: PMC1978528 A Visual Pathway Links Brain Structures Active during Magnetic Compass Orientation in Migratory Birds Dominik Heyers, Martina Manns, Harald Luksch, Onur Güntürkün, and Henrik Mouritsen PMCID: PMC1976598 Stochastic Species Turnover and Stable Coexistence in a Species-Rich, Fire-Prone Plant Community Wilfried Thuiller, Jasper A. Slingsby, Sean D. J. Privett, and Richard M. Cowling PMCID: PMC1976552 Evolution of Female Preference for Younger Males Christopher W. Beck and Daniel E. L. Promislow PMCID: PMC1976549 Children's Health Status: Examining the Associations among Income Poverty, Material Hardship, and Parental Factors Godwin S. Ashiabi and Keri K. O'Neal PMCID: PMC1978512 Mesenchymal Stem Cell-Derived Molecules Reverse Fulminant Hepatic Failure Biju Parekkadan, Daan van Poll, Kazuhiro Suganuma, Edward A. Carter, François Berthiaume, Arno W. Tilles, and Martin L. Yarmush PMCID: PMC1978513 Analysis of Mitochondrial DNA Sequences in Childhood Encephalomyopathies Reveals New Disease-Associated Variants Aijaz A. Wani, Sajad H. Ahanger, Sharmila A. Bapat, Ashraf Y. Rangrez, Nitin Hingankar, C. G. Suresh, Shama Barnabas, Milind S. Patole, and Yogesh S. Shouche PMCID: PMC1976591 Causal Inference in Multisensory Perception Konrad P. Körding, Ulrik Beierholm, Wei Ji Ma, Steven Quartz, Joshua B. Tenenbaum, and Ladan Shams PMCID: PMC1978520 Constitutive Phosphorylation of Aurora-A on Ser51 Induces Its Stabilization and Consequent Overexpression in Cancer Shojiro Kitajima, Yasusei Kudo, Ikuko Ogawa, Masaaki Tatsuka, Hidehiko Kawai, Michele Pagano, and Takashi Takata PMCID: PMC1976594 Transcriptional Program Induced by Wnt Protein in Human Fibroblasts Suggests Mechanisms for Cell Cooperativity in Defining Tissue Microenvironments Zach Klapholz-Brown, Graham G. Walmsley, Ysbrand M. Nusse, Roel Nusse, and Patrick O. Brown PMCID: PMC1976560 Mammalian MicroRNA Prediction through a Support Vector Machine Model of Sequence and Structure Ying Sheng, Pär G. Engström, and Boris Lenhard PMCID: PMC1978525 Complete Genomic Characterization of a Pathogenic A.II Strain of Francisella tularensis Subspecies tularensis Stephen M. Beckstrom-Sternberg, Raymond K. Auerbach, Shubhada Godbole, John V. Pearson, James S. Beckstrom-Sternberg, Zuoming Deng, Christine Munk, Kristy Kubota, Yan Zhou, David Bruce, Jyothi Noronha, Richard H. Scheuermann, Aihui Wang, Xianying Wei, Jianjun Wang, Jicheng Hao, David M. Wagner, Thomas S. Brettin, Nancy Brown, Paul Gilna, and Paul S. Keim PMCID: PMC1978527 Vesicle-Like Biomechanics Governs Important Aspects of Nuclear Geometry in Fission Yeast Gerald Lim H. W., Greg Huber, Yoshihiro Torii, Aiko Hirata, Jonathan Miller, and Shelley Sazer PMCID: PMC1993828 Satellite Tracking Reveals Long Distance Coastal Travel and Homing by Translocated Estuarine Crocodiles, Crocodylus porosus Mark A. Read, Gordon C. Grigg, Steve R. Irwin, Danielle Shanahan, and Craig E. Franklin PMCID: PMC1978533 Phylodynamics of HIV-1 in Lymphoid and Non-Lymphoid Tissues Reveals a Central Role for the Thymus in Emergence of CXCR4-Using Quasispecies Marco Salemi, Brant R. Burkhardt, Rebecca R. Gray, Guity Ghaffari, John W. Sleasman, and Maureen M. Goodenow PMCID: PMC1978532 Do Individual Females Differ Intrinsically in Their Propensity to Engage in Extra-Pair Copulations? Wolfgang Forstmeier PMCID: PMC1978515 The PDZ Domain as a Complex Adaptive System Alexei Kurakin, Andrzej Swistowski, Susan C. Wu, and Dale E. Bredesen PMCID: PMC1978516 Signaling of Human Frizzled Receptors to the Mating Pathway in Yeast Dietmar Dirnberger and Klaus Seuwen PMCID: PMC1978518 Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks Kira S. Makarova, Marina V. Omelchenko, Elena K. Gaidamakova, Vera Y. Matrosova, Alexander Vasilenko, Min Zhai, Alla Lapidus, Alex Copeland, Edwin Kim, Miriam Land, Konstantinos Mavromatis, Samuel Pitluck, Paul M. Richardson, Chris Detter, Thomas Brettin, Elizabeth Saunders, Barry Lai, Bruce Ravel, Kenneth M. Kemner, Yuri I. Wolf, Alexander Sorokin, Anna V. Gerasimova, Mikhail S. Gelfand, James K. Fredrickson, Eugene V. Koonin, and Michael J. Daly PMCID: PMC1978522 MVB-12, a Fourth Subunit of Metazoan ESCRT-I, Functions in Receptor Downregulation Anjon Audhya, Ian X. McLeod, John R. Yates, III, and Karen Oegema PMCID: PMC1978536 Human Neonatal Dendritic Cells Are Competent in MHC Class I Antigen Processing and Presentation Marielle C. Gold, Tammie L. Robinson, Matthew S. Cook, Laura K. Byrd, Heather D. Ehlinger, David M. Lewinsohn, and Deborah A. Lewinsohn PMCID: PMC1978526 Effects of Environment, Genetics and Data Analysis Pitfalls in an Esophageal Cancer Genome-Wide Association Study Alexander Statnikov, Chun Li, and Constantin F. Aliferis PMCID: PMC1978529 The INT6 Cancer Gene and MEK Signaling Pathways Converge during Zebrafish Development Michal Grzmil, Danny Whiting, John Maule, Corina Anastasaki, James F. Amatruda, Robert N. Kelsh, Chris J. Norbury, and E. Elizabeth Patton PMCID: PMC1978538 Antagonistic Bacterial Interactions Help Shape Host-Symbiont Dynamics within the Fungus-Growing Ant-Microbe Mutualism Michael Poulsen, Daniel P. Erhardt, Daniel J. Molinaro, Ting-Li Lin, and Cameron R. Currie PMCID: PMC1978530 Can ID Repetitive Elements Serve as Cis-acting Dendritic Targeting Elements? An In Vivo Study Tasneem Khanam, Carsten A. Raabe, Martin Kiefmann, Sergej Handel, Boris V. Skryabin, and Jürgen Brosius PMCID: PMC1978531 A Model-Based Analysis of Chemical and Temporal Patterns of Cuticular Hydrocarbons in Male Drosophila melanogaster Clement Kent, Reza Azanchi, Ben Smith, Adrienne Chu, and Joel Levine PMCID: PMC1978534 Evidence that Proteasome-Dependent Degradation of the Retinoblastoma Protein in Cells Lacking A-Type Lamins Occurs Independently of Gankyrin and MDM2 Ryan T. Nitta, Catherine L. Smith, and Brian K. Kennedy PMCID: PMC1978514 |
