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Volume 4;  2006
Editorial
Publishing proteomic data
Martin Latterich
Proteome Sci. 2006; 4: 8. Published online 2006 April 28. doi: 10.1186/1477-5956-4-8.
PMCID: PMC1501001
Methodology
Estimating probabilities of peptide database identifications to LC-FTICR-MS observations
Kevin K Anderson, Matthew E Monroe, and Don S Daly
Proteome Sci. 2006; 4: 1. Published online 2006 February 24. doi: 10.1186/1477-5956-4-1.
PMCID: PMC1450261
Optimising the Use of TRIzol-extracted Proteins in Surface Enhanced Laser Desorption/ Ionization (SELDI) Analysis
Tsz-Kwong Man, Yiting Li, Tu Anh Dang, Jianhe Shen, Laszlo Perlaky, and Ching C Lau
Proteome Sci. 2006; 4: 3. Published online 2006 March 23. doi: 10.1186/1477-5956-4-3.
PMCID: PMC1440846
Optimization and evaluation of surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry for protein profiling of cerebrospinal fluid
Nelson Guerreiro, Baltazar Gomez-Mancilla, and Stéphane Charmont
Proteome Sci. 2006; 4: 7. Published online 2006 April 27. doi: 10.1186/1477-5956-4-7.
PMCID: PMC1464122
Competition between bound and free peptides in an ELISA-based procedure that assays peptides derived from protein digests
Ori Braitbard, Hava Glickstein, Janette Bishara-Shieban, Umberto Pace, and Wilfred D Stein
Proteome Sci. 2006; 4: 12. Published online 2006 May 31. doi: 10.1186/1477-5956-4-12.
PMCID: PMC1482681
An ELISA-based procedure for assaying proteins in digests of human leukocytes and cell lines, using specifically selected peptides and appropriate antibodies
Ori Braitbard, Janette Bishara-Shieban, Hava Glickstein, Miriam Kott-Gutkowski, Umberto Pace, Deborah G Rund, and Wilfred D Stein
Proteome Sci. 2006; 4: 14. Published online 2006 June 21. doi: 10.1186/1477-5956-4-14.
PMCID: PMC1513550
Data processing and classification analysis of proteomic changes: a case study of oil pollution in the mussel, Mytilus edulis
Tiphaine Monsinjon, Odd Ketil Andersen, François Leboulenger, and Thomas Knigge
Proteome Sci. 2006; 4: 17. Published online 2006 September 13. doi: 10.1186/1477-5956-4-17.
PMCID: PMC1592071
Analytical model of peptide mass cluster centres with applications
Witold E Wolski, Malcolm Farrow, Anne-Katrin Emde, Hans Lehrach, Maciej Lalowski, and Knut Reinert
Proteome Sci. 2006; 4: 18. Published online 2006 September 23. doi: 10.1186/1477-5956-4-18.
PMCID: PMC1617084
Interest of major serum protein removal for Surface-Enhanced Laser Desorption/Ionization – Time Of Flight (SELDI-TOF) proteomic blood profiling
Stéphane Roche, Laurent Tiers, Monique Provansal, Marie-Thérèse Piva, and Sylvain Lehmann
Proteome Sci. 2006; 4: 20. Published online 2006 October 5. doi: 10.1186/1477-5956-4-20.
PMCID: PMC1613235
Signal stability of Cy3 and Cy5 on antibody microarrays
Qiang Gu, Thamil Mani Sivanandam, and Caroline Aehyun Kim
Proteome Sci. 2006; 4: 21. Published online 2006 October 11. doi: 10.1186/1477-5956-4-21.
PMCID: PMC1633729
Reviews
A systems approach to clinical oncology: Focus on breast cancer
Mark Abramovitz and Brian Leyland-Jones
Proteome Sci. 2006; 4: 5. Published online 2006 April 4. doi: 10.1186/1477-5956-4-5.
PMCID: PMC1456950
Phosphoprotein analysis: from proteins to proteomes
Frédéric Delom and Eric Chevet
Proteome Sci. 2006; 4: 15. Published online 2006 July 19. doi: 10.1186/1477-5956-4-15.
PMCID: PMC1557478
Research
Protein cleavage strategies for an improved analysis of the membrane proteome
Frank Fischer and Ansgar Poetsch
Proteome Sci. 2006; 4: 2. Published online 2006 March 2. doi: 10.1186/1477-5956-4-2.
PMCID: PMC1458320
Proteins pattern alteration in AZT-treated K562 cells detected by two-dimensional gel electrophoresis and peptide mass fingerprinting
Gabriele D'Andrea, Anna R Lizzi, Sara Venditti, Laura Di Francesco, Alessandra Giorgi, Giuseppina Mignogna, Arduino Oratore, and Argante Bozzi
Proteome Sci. 2006; 4: 4. Published online 2006 March 29. doi: 10.1186/1477-5956-4-4.
PMCID: PMC1435870
Proteomic analysis of acidic chaperones, and stress proteins in extreme halophile Halobacterium NRC-1: a comparative proteomic approach to study heat shock response
Hem D Shukla
Proteome Sci. 2006; 4: 6. Published online 2006 April 19. doi: 10.1186/1477-5956-4-6.
PMCID: PMC1475562
Proteomic identification of Drosophila melanogaster male accessory gland proteins, including a pro-cathepsin and a soluble γ-glutamyl transpeptidase
Michael J Walker, Caroline M Rylett, Jeff N Keen, Neil Audsley, Mohammed Sajid, Alan D Shirras, and R Elwyn Isaac
Proteome Sci. 2006; 4: 9. Published online 2006 May 2. doi: 10.1186/1477-5956-4-9.
PMCID: PMC1462989
High-throughput screening of cellulase F mutants from multiplexed plasmid sets using an automated plate assay on a functional proteomic robotic workcell
Stephen R Hughes, Steven B Riedmuller, Jeffrey A Mertens, Xin-Liang Li, Kenneth M Bischoff, Nasib Qureshi, Michael A Cotta, and Philip J Farrelly
Proteome Sci. 2006; 4: 10. Published online 2006 May 2. doi: 10.1186/1477-5956-4-10.
PMCID: PMC1479318
Ontogenetic variations in the venom proteome of the Amazonian snake Bothrops atrox
Rafael AP Guércio, Anna Shevchenko, Andrej Shevchenko, Jorge L López-Lozano, Jaime Paba, Marcelo V Sousa, and Carlos AO Ricart
Proteome Sci. 2006; 4: 11. Published online 2006 May 11. doi: 10.1186/1477-5956-4-11.
PMCID: PMC1483819
Proteome-level display by 2-dimensional chromatography of extracellular matrix-dependent modulation of the phenotype of bladder cancer cells
Robert E Hurst, Kimberly D Kyker, Mikhail G Dozmorov, Nobuaki Takemori, Anil Singh, Hiroyuki Matsumoto, Ricardo Saban, Edna Betgovargez, and Michael H Simonian
Proteome Sci. 2006; 4: 13. Published online 2006 June 2. doi: 10.1186/1477-5956-4-13.
PMCID: PMC1534010
Two-dimensional gel proteome reference map of blood monocytes
Ming Jin, Philip T Diaz, Tran Bourgeois, Charis Eng, Clay B Marsh, and Haifeng M Wu
Proteome Sci. 2006; 4: 16. Published online 2006 September 1. doi: 10.1186/1477-5956-4-16.
PMCID: PMC1634993
Comparative proteomic analysis of high cell density cultivations with two recombinant Bacillus megaterium strains for the production of a heterologous dextransucrase
Wei Wang, Rajan Hollmann, and Wolf-Dieter Deckwer
Proteome Sci. 2006; 4: 19. Published online 2006 October 5. doi: 10.1186/1477-5956-4-19.
PMCID: PMC1622742
The use of proteomics in identifying differentially expressed serum proteins in humans with type 2 diabetes
Tea Sundsten, Michael Eberhardson, Michael Göransson, and Peter Bergsten
Proteome Sci. 2006; 4: 22. Published online 2006 December 12. doi: 10.1186/1477-5956-4-22.
PMCID: PMC1716156
Effect of long-term exposure of SH-SY5Y cells to morphine: a whole cell proteomic analysis
Jérémie Neasta, Sandrine Uttenweiler-Joseph, Karima Chaoui, Bernard Monsarrat, Jean-Claude Meunier, and Lionel Moulédous
Proteome Sci. 2006; 4: 23. Published online 2006 December 21. doi: 10.1186/1477-5956-4-23.
PMCID: PMC1766345
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