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Volume 7;  2009
Methodology
High resolution preparation of monocyte-derived macrophages (MDM) protein fractions for clinical proteomics
Rita Polati, Annalisa Castagna, Alessandra Bossi, Natascia Campostrini, Federica Zaninotto, Anna Maria Timperio, Lello Zolla, Oliviero Olivieri, Roberto Corrocher, and Domenico Girelli
Proteome Sci. 2009; 7: 4. Published online 2009 February 19. doi: 10.1186/1477-5956-7-4.
PMCID: PMC2649903
GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data
Paulo C Carvalho, Juliana SG Fischer, Emily I Chen, Gilberto B Domont, Maria GC Carvalho, Wim M Degrave, John R Yates, III, and Valmir C Barbosa
Proteome Sci. 2009; 7: 6. Published online 2009 February 24. doi: 10.1186/1477-5956-7-6.
PMCID: PMC2652440
Proteomic analysis of phosphoproteins sensitive to a phosphatidylinositol 3-kinase inhibitor, ZSTK474, by using SELDI-TOF MS
Tetsuyuki Akashi and Takao Yamori
Proteome Sci. 2009; 7: 14. Published online 2009 March 31. doi: 10.1186/1477-5956-7-14.
PMCID: PMC2670283
Development of reverse phase protein microarrays for the validation of clusterin, a mid-abundant blood biomarker
Adriana Aguilar-Mahecha, Christiane Cantin, Maureen O'Connor-McCourt, Andre Nantel, and Mark Basik
Proteome Sci. 2009; 7: 15. Published online 2009 April 6. doi: 10.1186/1477-5956-7-15.
PMCID: PMC2672067
Research
A study on the differential protein profiles in liver cells of heat stress rats with and without turpentine treatment
Ganapathy Rajaseger, Chin Leong Lim, Lee Koon Wui, Padmanabhan Saravanan, Kai Tang, Ponnampalam Gopalakrishnakone, Yap Eric Pen-huat, Jia Lu, and Moochhala M Shabbir
Proteome Sci. 2009; 7: 1. Published online 2009 January 7. doi: 10.1186/1477-5956-7-1.
PMCID: PMC2626589
Glycoproteomic analysis of two mouse mammary cell lines during transforming growth factor (TGF)-β induced epithelial to mesenchymal transition
Jennifer J Hill, Tammy-Lynn Tremblay, Christiane Cantin, Maureen O'Connor-McCourt, John F Kelly, and Anne EG Lenferink
Proteome Sci. 2009; 7: 2. Published online 2009 January 8. doi: 10.1186/1477-5956-7-2.
PMCID: PMC2651118
Identification of pancreatic cancer invasion-related proteins by proteomic analysis
Naomi Walsh, Norma O'Donovan, Susan Kennedy, Michael Henry, Paula Meleady, Martin Clynes, and Paul Dowling
Proteome Sci. 2009; 7: 3. Published online 2009 February 14. doi: 10.1186/1477-5956-7-3.
PMCID: PMC2646716
Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes
Rembert Pieper, Shih-Ting Huang, David J Clark, Jeffrey M Robinson, Hamid Alami, Prashanth P Parmar, Moo-Jin Suh, Srilatha Kuntumalla, Christine L Bunai, Robert D Perry, Robert D Fleischmann, and Scott N Peterson
Proteome Sci. 2009; 7: 5. Published online 2009 February 19. doi: 10.1186/1477-5956-7-5.
PMCID: PMC2663777
Discovery and identification of potential biomarkers of pediatric Acute Lymphoblastic Leukemia
Linan Shi, Jun Zhang, Peng Wu, Kai Feng, Jing Li, Zhensheng Xie, Peng Xue, Tanxi Cai, Ziyou Cui, Xiulan Chen, Junjie Hou, Jianzhong Zhang, and Fuquan Yang
Proteome Sci. 2009; 7: 7. Published online 2009 March 16. doi: 10.1186/1477-5956-7-7.
PMCID: PMC2662805
Biomarkers of HIV-1 associated dementia: proteomic investigation of sera
Jayme Wiederin, Wojciech Rozek, Fenghai Duan, and Pawel Ciborowski
Proteome Sci. 2009; 7: 8. Published online 2009 March 17. doi: 10.1186/1477-5956-7-8.
PMCID: PMC2666658
A novel approach to denoising ion trap tandem mass spectra
Jiarui Ding, Jinhong Shi, Guy G Poirier, and Fang-Xiang Wu
Proteome Sci. 2009; 7: 9. Published online 2009 March 17. doi: 10.1186/1477-5956-7-9.
PMCID: PMC2670284
Two-dimensional gel proteome reference map of human small intestine
Maria Paola Simula, Renato Cannizzaro, Maria Dolores Marin, Alessandro Pavan, Giuseppe Toffoli, Vincenzo Canzonieri, and Valli De Re
Proteome Sci. 2009; 7: 10. Published online 2009 March 19. doi: 10.1186/1477-5956-7-10.
PMCID: PMC2667413
Identification and bioinformatic analysis of the membrane proteins of synechocystis sp. PCC 6803
Yingchun Wang, Wu Xu, and Parag R Chitnis
Proteome Sci. 2009; 7: 11. Published online 2009 March 25. doi: 10.1186/1477-5956-7-11.
PMCID: PMC2666656
The impact of surfactant protein-A on ozone-induced changes in the mouse bronchoalveolar lavage proteome
Rizwanul Haque, Todd M Umstead, Willard M Freeman, Joanna Floros, and David S Phelps
Proteome Sci. 2009; 7: 12. Published online 2009 March 26. doi: 10.1186/1477-5956-7-12.
PMCID: PMC2666657
Proteome analysis of the hyaluronic acid-producing bacterium, Streptococcus zooepidemicus
Esteban Marcellin, Christian W Gruber, Colin Archer, David J Craik, and Lars K Nielsen
Proteome Sci. 2009; 7: 13. Published online 2009 March 28. doi: 10.1186/1477-5956-7-13.
PMCID: PMC2670282
Proteomic study on gender differences in aging kidney of mice
Hanna Amelina and Susana Cristobal
Proteome Sci. 2009; 7: 16. Published online 2009 April 9. doi: 10.1186/1477-5956-7-16.
PMCID: PMC2673210
Comprehensive proteomic analysis of human cervical-vaginal fluid using colposcopy samples
Geert Zegels, Geert AA Van Raemdonck, Edmond P Coen, Wiebren AA Tjalma, and Xaveer WM Van Ostade
Proteome Sci. 2009; 7: 17. Published online 2009 April 17. doi: 10.1186/1477-5956-7-17.
PMCID: PMC2678104
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