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Volume 12(1);  January 2006
Bioinformatics
Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories
SANDRA SMIT, MICHAEL YARUS, and ROB KNIGHT
RNA. 2006 January; 12(1): 1–14. doi: 10.1261/rna.2183806.
PMCID: PMC1370880
A computational screen for mammalian pseudouridylation guide H/ACA RNAs
PETER SCHATTNER, SERGIO BARBERAN-SOLER, and TODD M. LOWE
RNA. 2006 January; 12(1): 15–25. doi: 10.1261/rna.2210406.
PMCID: PMC1370881
Reports
Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome
DEFNE E. EGECIOGLU, ANTHONY K. HENRAS, and GUILLAUME F. CHANFREAU
RNA. 2006 January; 12(1): 26–32. doi: 10.1261/rna.2207206.
PMCID: PMC1370882
The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity
JULIE L. BRUNELLE, ELAINE M. YOUNGMAN, DIVYA SHARMA, and RACHEL GREEN
RNA. 2006 January; 12(1): 33–39. doi: 10.1261/rna.2256706.
PMCID: PMC1370883
Articles
Structural study of the H/ACA snoRNP components Nop10p and the 3′ hairpin of U65 snoRNA
MAY KHANNA, HAIHONG WU, CARINA JOHANSSON, MICHÈLE CAIZERGUES-FERRER, and JULI FEIGON
RNA. 2006 January; 12(1): 40–52. doi: 10.1261/rna.2221606.
PMCID: PMC1370884
A protein related to the vaccinia virus cap-specific methyltransferase VP39 is involved in cap 4 modification in Trypanosoma brucei
GEORGE K. ARHIN, HONGJIE LI, ELISABETTA ULLU, and CHRISTIAN TSCHUDI
RNA. 2006 January; 12(1): 53–62. doi: 10.1261/rna.2223406.
PMCID: PMC1370885
Effective inhibition of human cytomegalovirus gene expression and growth by intracellular expression of external guide sequence RNA
HONGJIAN LI, PHONG TRANG, KIHOON KIM, TIANHONG ZHOU, SEAN UMAMOTO, and FENYONG LIU
RNA. 2006 January; 12(1): 63–72. doi: 10.1261/rna.2184706.
PMCID: PMC1370886
Mechanism of the phosphatase component of Clostridium thermocellum polynucleotide kinase-phosphatase
NIROSHIKA KEPPETIPOLA and STEWART SHUMAN
RNA. 2006 January; 12(1): 73–82. doi: 10.1261/rna.2196406.
PMCID: PMC1370887
Topology of three-way junctions in folded RNAs
AURÉLIE LESCOUTE and ERIC WESTHOF
RNA. 2006 January; 12(1): 83–93. doi: 10.1261/rna.2208106.
PMCID: PMC1370888
Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components
NADEJDA BELIAKOVA-BETHELL, CARLA BECKHAM, THOMAS H. GIDDINGS, JR, MARK WINEY, ROY PARKER, and SUZANNE SANDMEYER
RNA. 2006 January; 12(1): 94–101. doi: 10.1261/rna.2264806.
PMCID: PMC1370889
A 3′ UTR sequence stabilizes termination codons in the unspliced RNA of Rous sarcoma virus
JASON E. WEIL and KAREN L. BEEMON
RNA. 2006 January; 12(1): 102–110. doi: 10.1261/rna.2129806.
PMCID: PMC1370890
p54nrb is a component of the snRNP-free U1A (SF-A) complex that promotes pre-mRNA cleavage during polyadenylation
SONGCHUN LIANG and CAROL S. LUTZ
RNA. 2006 January; 12(1): 111–121. doi: 10.1261/rna.2213506.
PMCID: PMC1370891
Non-snRNP U1A levels decrease during mammalian B-cell differentiation and release the IgM secretory poly(A) site from repression
JIANGLIN MA, SAMUEL I. GUNDERSON, and CATHERINE PHILLIPS
RNA. 2006 January; 12(1): 122–132. doi: 10.1261/rna.2159506.
PMCID: PMC1370892
A base-specific recognition signal in the 5′ consensus sequence of rotavirus plus-strand RNAs promotes replication of the double-stranded RNA genome segments
M. ALEJANDRA TORTORICI, BRUCE A. SHAPIRO, and JOHN T. PATTON
RNA. 2006 January; 12(1): 133–146. doi: 10.1261/rna.2122606.
PMCID: PMC1370893
Conformational changes involved in initiation of minus-strand synthesis of a virus-associated RNA
GUOHUA ZHANG, JIUCHUN ZHANG, ANNA T. GEORGE, TILMAN BAUMSTARK, and ANNE E. SIMON
RNA. 2006 January; 12(1): 147–162. doi: 10.1261/rna.2166706.
PMCID: PMC1370894
Small interfering RNAs containing full 2′-O-methylribonucleotide-modified sense strands display Argonaute2/eIF2C2-dependent activity
BRYAN A. KRAYNACK and BRENDA F. BAKER
RNA. 2006 January; 12(1): 163–176. doi: 10.1261/rna.2150806.
PMCID: PMC1370895
Method
A yeast RNA-hybrid system for the detection of RNA–RNA interactions in vivo
NICOLAS PIGANEAU, URSULA E. SCHAUER, and RENÉE SCHROEDER
RNA. 2006 January; 12(1): 177–184. doi: 10.1261/rna.2105506.
PMCID: PMC1370896
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