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Volume 11(12);  December 2005
Obituary
Hugh Dunbar Robertson (1943–2005)
Michael B. Mathews, Sidney Altman, and William H. McClain
RNA. 2005 December; 11(12): 1751–1752.
PMCID: PMC1370862
Review
MicroRNA function: Multiple mechanisms for a tiny RNA?
RAMESH S. PILLAI
RNA. 2005 December; 11(12): 1753–1761. doi: 10.1261/rna.2248605.
PMCID: PMC1370863
Letter to the Editor
Further evidence that ribavirin interacts with eIF4E
ALEX KENTSIS, LAURENT VOLPON, IVAN TOPISIROVIC, CLIFFORD E. SOLL, BILJANA CULJKOVIC, LING SHAO, and KATHERINE L.B. BORDEN
RNA. 2005 December; 11(12): 1762–1766. doi: 10.1261/rna.2238705.
PMCID: PMC1370864
Bioinformatics
MAASE: An alternative splicing database designed for supporting splicing microarray applications
CHRISTINA L. ZHENG, YOUNG-SOO KWON, HAI-RI LI, KUI ZHANG, GABRIELA COUTINHO-MANSFIELD, CANZHU YANG, T. MURLIDHARAN NAIR, MICHAEL GRIBSKOV, and XIANG-DONG FU
RNA. 2005 December; 11(12): 1767–1776. doi: 10.1261/rna.2650905.
PMCID: PMC1370865
Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse
CHRISTINA L. ZHENG, XIANG-DONG FU, and MICHAEL GRIBSKOV
RNA. 2005 December; 11(12): 1777–1787. doi: 10.1261/rna.2660805.
PMCID: PMC1370866
Reports
A pseudoknot in the 3′ non-core region of the glmS ribozyme enhances self-cleavage activity
SARA R. WILKINSON and MICHAEL D. BEEN
RNA. 2005 December; 11(12): 1788–1794. doi: 10.1261/rna.2203605.
PMCID: PMC1370867
Ge-1 is a central component of the mammalian cytoplasmic mRNA processing body
JIANG HONG YU, WEI-HONG YANG, TOD GULICK, KENNETH D. BLOCH, and DONALD B. BLOCH
RNA. 2005 December; 11(12): 1795–1802. doi: 10.1261/rna.2142405.
PMCID: PMC1370868
The polypyrimidine tract binding protein is a monomer
TOM P. MONIE, HELENA HERNANDEZ, CAROL V. ROBINSON, PETER SIMPSON, STEPHEN MATTHEWS, and STEPHEN CURRY
RNA. 2005 December; 11(12): 1803–1808. doi: 10.1261/rna.2214405.
PMCID: PMC1370869
Articles
Evidence for an RNA chaperone function of polypyrimidine tract-binding protein in picornavirus translation
YUTONG SONG, ELENI TZIMA, KERSTIN OCHS, GERGIS BASSILI, HEIDI TRUSHEIM, MONICA LINDER, KLAUS T. PREISSNER, and MICHAEL NIEPMANN
RNA. 2005 December; 11(12): 1809–1824. doi: 10.1261/rna.7430405.
PMCID: PMC1370870
A consensus CaMK IV-responsive RNA sequence mediates regulation of alternative exons in neurons
JIUYONG XIE, CALVIN JAN, PETER STOILOV, JENNIFER PARK, and DOUGLAS L. BLACK
RNA. 2005 December; 11(12): 1825–1834. doi: 10.1261/rna.2171205.
PMCID: PMC1370871
Differences and similarities between Drosophila and mammalian 3′ end processing of histone pre-mRNAs
ZBIGNIEW DOMINSKI, XIAO-CUI YANG, MATHEW PURDY, and WILLIAM F. MARZLUFF
RNA. 2005 December; 11(12): 1835–1847. doi: 10.1261/rna.2179305.
PMCID: PMC1370872
Arginine-rich motifs present multiple interfaces for specific binding by RNA
TRAVIS S. BAYER, LAUREN N. BOOTH, SCOTT M. KNUDSEN, and ANDREW D. ELLINGTON
RNA. 2005 December; 11(12): 1848–1857. doi: 10.1261/rna.2167605.
PMCID: PMC1370873
Functional characterization of the SOFA delta ribozyme
LUCIEN JUNIOR BERGERON, CÉDRIC REYMOND, and JEAN-PIERRE PERREAULT
RNA. 2005 December; 11(12): 1858–1868. doi: 10.1261/rna.2112705.
PMCID: PMC1370874
Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core
THOMAS Ø. TANGE, TOSHIHARU SHIBUYA, MELISSA S. JURICA, and MELISSA J. MOORE
RNA. 2005 December; 11(12): 1869–1883. doi: 10.1261/rna.2155905.
PMCID: PMC1370875
Predicting RNA folding thermodynamics with a reduced chain representation model
SONG CAO and SHI-JIE CHEN
RNA. 2005 December; 11(12): 1884–1897. doi: 10.1261/rna.2109105.
PMCID: PMC1370876
Accessibility of 18S rRNA in human 40S subunits and 80S ribosomes at physiological magnesium ion concentrations—implications for the study of ribosome dynamics
CHRISTINA L. SHENVI, KEN C. DONG, ERIC M. FRIEDMAN, JEFFREY A. HANSON, and JAMIE H.D. CATE
RNA. 2005 December; 11(12): 1898–1908. doi: 10.1261/rna.2192805.
PMCID: PMC1370877
Method
Optimizing splinted ligation of highly structured small RNAs
WOLFRAM C. KURSCHAT, JULIUS MÜLLER, RICHARD WOMBACHER, and MARK HELM
RNA. 2005 December; 11(12): 1909–1914. doi: 10.1261/rna.2170705.
PMCID: PMC1370878
Complete MALDI-ToF MS analysis of cross-linked peptide–RNA oligonucleotides derived from nonlabeled UV-irradiated ribonucleoprotein particles
EVA KÜHN-HÖLSKEN, CHRISTOF LENZ, BJÖRN SANDER, REINHARD LÜHRMANN, and HENNING URLAUB
RNA. 2005 December; 11(12): 1915–1930. doi: 10.1261/rna.2176605.
PMCID: PMC1370879
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