| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 September 27; 102(39): 13711–13712. doi: 10.1073/iti3905102.PMCID: PMC1236599 Commentaries Mycoplasma takes a walk Nyles W. Charon PMCID: PMC1236571 First glimpses of a chaperonin-bound folding intermediate Joanna F. Swain and Lila M. Gierasch PMCID: PMC1236572 Coherent femtosecond multidimensional probes of molecular vibrations Shaul Mukamel and Wei Zhuang PMCID: PMC1236589 Holding the reins on Myosin V Adrian O. Olivares and Enrique M. De La Cruz PMCID: PMC1236595 Profile Profile of Elizabeth F. Loftus Nick Zagorski PMCID: PMC1236565 Physical Sciences Chemistry Design of a “green” one-step catalytic production of ε-caprolactam (precursor of nylon-6) John Meurig Thomas and Robert Raja PMCID: PMC1236590 Quantifying amino acid conformational preferences and side-chain–side-chain interactions in β-hairpins Scott T. Phillips, Giovanni Piersanti, and Paul A. Bartlett PMCID: PMC1202387 Mirror-symmetry breaking in the Soai reaction: A kinetic understanding Jesús Rivera Islas, Dominique Lavabre, Jean-Michel Grevy, Ramón Hernández Lamoneda, Haydée Rojas Cabrera, Jean-Claude Micheau, and Thomas Buhse PMCID: PMC1236534 Replica exchange with solute tempering: A method for sampling biological systems in explicit water Pu Liu, Byungchan Kim, Richard A. Friesner, and B. J. Berne PMCID: PMC1236566 Volatile fractionation in the early solar system and chondrule/matrix complementarity Philip A. Bland, Olivier Alard, Gretchen K. Benedix, Anton T. Kearsley, Olwyn N. Menzies, Lauren E. Watt, and Nick W. Rogers PMCID: PMC1224360 From the Cover:
Mimicking natural evolution in metallo-β-lactamases through second-shell ligand mutations Pablo E. Tomatis, Rodolfo M. Rasia, Lorenzo Segovia, and Alejandro J. Vila PMCID: PMC1236536 Engineering stable peptide toxins by means of backbone cyclization: Stabilization of the α-conotoxin MII Richard J. Clark, Harald Fischer, Louise Dempster, Norelle L. Daly, K. Johan Rosengren, Simon T. Nevin, Frederic A. Meunier, David J. Adams, and David J. Craik PMCID: PMC1236553 Physics From the Cover:
Spontaneous evolution of modularity and network motifs Nadav Kashtan and Uri Alon PMCID: PMC1236541 On the nonlinear modeling of shot noise Iddo Eliazar and Joseph Klafter PMCID: PMC1216835 Biological Sciences Anthropology Relatively well preserved DNA is present in the crystal aggregates of fossil bones Michal Salamon, Noreen Tuross, Baruch Arensburg, and Steve Weiner PMCID: PMC1236542 Applied Biological Sciences Regulatable atrial natriuretic peptide gene therapy for hypertension Kurt J. Schillinger, Sophia Y. Tsai, George E. Taffet, Anilkumar K. Reddy, Ali J. Marian, Mark L. Entman, Kazuhiro Oka, Lawrence Chan, and Bert W. O'Malley PMCID: PMC1236585 Biochemistry Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis Tomoko Miyata, Hirofumi Suzuki, Takuji Oyama, Kouta Mayanagi, Yoshizumi Ishino, and Kosuke Morikawa PMCID: PMC1236569 Out-of-plane motions in open sliding clamps: Molecular dynamics simulations of eukaryotic and archaeal proliferating cell nuclear antigen Steven L. Kazmirski, Yanxiang Zhao, Gregory D. Bowman, Mike O'Donnell, and John Kuriyan PMCID: PMC1215310 Autophagy in chronically ischemic myocardium Lin Yan, Dorothy E. Vatner, Song-Jung Kim, Hui Ge, Malthi Masurekar, William H. Massover, Guiping Yang, Yutaka Matsui, Junichi Sadoshima, and Stephen F. Vatner PMCID: PMC1224362 Structure and ESCRT-III protein interactions of the MIT domain of human VPS4A Anna Scott, Jason Gaspar, Melissa D. Stuchell-Brereton, Steven L. Alam, Jack J. Skalicky, and Wesley I. Sundquist PMCID: PMC1236530 The x-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale Bryan W. Lepore, Frank J. Ruzicka, Perry A. Frey, and Dagmar Ringe PMCID: PMC1236562 Nitrogenase reactivity with P-cluster variants Yilin Hu, Mary C. Corbett, Aaron W. Fay, Jerome A. Webber, Britt Hedman, Keith O. Hodgson, and Markus W. Ribbe PMCID: PMC1236593 Rapid hydrolysis of ATP by mitochondrial F1-ATPase correlates with the filling of the second of three catalytic sites Yakov M. Milgrom and Richard L. Cross PMCID: PMC1236596 Monomeric inducible nitric oxide synthase localizes to peroxisomes in hepatocytes P. A. Loughran, D. B. Stolz, Y. Vodovotz, S. C. Watkins, R. L. Simmons, and T. R. Billiar PMCID: PMC1216830 Dichlorination of a pyrrolyl-S-carrier protein by FADH2-dependent halogenase PltA during pyoluteorin biosynthesis Pieter C. Dorrestein, Ellen Yeh, Sylvie Garneau-Tsodikova, Neil L. Kelleher, and Christopher T. Walsh PMCID: PMC1236592 Cell entry mechanism of enzymatic bacterial colicins: Porin recruitment and the thermodynamics of receptor binding Nicholas G. Housden, Steven R. Loftus, Geoffrey R. Moore, Richard James, and Colin Kleanthous PMCID: PMC1236540 NO-mediated cytoprotection: Instant adaptation to oxidative stress in bacteria Ivan Gusarov and Evgeny Nudler PMCID: PMC1236549 Biophysics Quantifying amino acid conformational preferences and side-chain–side-chain interactions in β-hairpins Scott T. Phillips, Giovanni Piersanti, and Paul A. Bartlett PMCID: PMC1202387 Initiation of the power stroke in muscle: Insights from the phosphate analog AlF4 Theresia Kraft, Enke Mählmann, Thomas Mattei, and Bernhard Brenner PMCID: PMC1236544 Molecular origin of time-dependent fluorescence shifts in proteins Lennart Nilsson and Bertil Halle PMCID: PMC1236546 From the Cover:
A force-dependent state controls the coordination of processive myosin V Thomas J. Purcell, H. Lee Sweeney, and James A. Spudich PMCID: PMC1236568 Electrochemical imaging of fusion pore openings by electrochemical detector arrays Ismail Hafez, Kassandra Kisler, Khajak Berberian, Gregor Dernick, Vicente Valero, Ming G. Yong, Harold G. Craighead, and Manfred Lindau PMCID: PMC1236545 Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings Guillaume Bouvignies, Pau Bernadó, Sebastian Meier, Kyuil Cho, Stephan Grzesiek, Rafael Brüschweiler, and Martin Blackledge PMCID: PMC1236556 A conserved trimerization motif controls the topology of short coiled coils Richard A. Kammerer, Dirk Kostrewa, Pavlos Progias, Srinivas Honnappa, David Avila, Ariel Lustig, Fritz K. Winkler, Jean Pieters, and Michel O. Steinmetz PMCID: PMC1236532 Collagen triple-helix formation in all-trans chains proceeds by a nucleation/growth mechanism with a purely entropic barrier Annett Bachmann, Thomas Kiefhaber, Sergei Boudko, Jürgen Engel, and Hans Peter Bächinger PMCID: PMC1236557 Microtubule movements on the arms of mitotic chromosomes: Polar ejection forces quantified in vitro Gary J. Brouhard and Alan J. Hunt PMCID: PMC1236563 Cell Biology Breast cancer bone metastasis mediated by the Smad tumor suppressor pathway Yibin Kang, Wei He, Shaun Tulley, Gaorav P. Gupta, Inna Serganova, Chang-Rung Chen, Katia Manova-Todorova, Ronald Blasberg, William L. Gerald, and Joan Massagué PMCID: PMC1236573 Antioxidants modulate mitochondrial PKA and increase CREB binding to D-loop DNA of the mitochondrial genome in neurons Hoon Ryu, Junghee Lee, Soren Impey, Rajiv R. Ratan, and Robert J. Ferrante PMCID: PMC1236533 Bifurcated converging pathways for high Ca2+- and TGFβ-induced inhibition of growth of normal human keratinocytes Masakiyo Sakaguchi, Hiroyuki Sonegawa, Takamasa Nukui, Yoshihiko Sakaguchi, Masahiro Miyazaki, Masayoshi Namba, and Nam-ho Huh PMCID: PMC1216828 Effect of temperature on the working stroke of muscle myosin V. Decostre, P. Bianco, V. Lombardi, and G. Piazzesi PMCID: PMC1236584 An evolutionary proteomics approach identifies substrates of the cAMP-dependent protein kinase Yelena V. Budovskaya, Joseph S. Stephan, Stephen J. Deminoff, and Paul K. Herman PMCID: PMC1236527 Environmental Sciences Similarity of vegetation dynamics during interglacial periods Rachid Cheddadi, Jacques-Louis de Beaulieu, Jean Jouzel, Valérie Andrieu-Ponel, Jeanne-Marine Laurent, Maurice Reille, Dominique Raynaud, and Avner Bar-Hen PMCID: PMC1236528 Genetics miR-15 and miR-16 induce apoptosis by targeting BCL2 Amelia Cimmino, George Adrian Calin, Muller Fabbri, Marilena V. Iorio, Manuela Ferracin, Masayoshi Shimizu, Sylwia E. Wojcik, Rami I. Aqeilan, Simona Zupo, Mariella Dono, Laura Rassenti, Hansjuerg Alder, Stefano Volinia, Chang-gong Liu, Thomas J. Kipps, Massimo Negrini, and Carlo M. Croce PMCID: PMC1236577 Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome” Hervé Tettelin, Vega Masignani, Michael J. Cieslewicz, Claudio Donati, Duccio Medini, Naomi L. Ward, Samuel V. Angiuoli, Jonathan Crabtree, Amanda L. Jones, A. Scott Durkin, Robert T. DeBoy, Tanja M. Davidsen, Marirosa Mora, Maria Scarselli, Immaculada Margarit y Ros, Jeremy D. Peterson, Christopher R. Hauser, Jaideep P. Sundaram, William C. Nelson, Ramana Madupu, Lauren M. Brinkac, Robert J. Dodson, Mary J. Rosovitz, Steven A. Sullivan, Sean C. Daugherty, Daniel H. Haft, Jeremy Selengut, Michelle L. Gwinn, Liwei Zhou, Nikhat Zafar, Hoda Khouri, Diana Radune, George Dimitrov, Kisha Watkins, Kevin J. B. O'Connor, Shannon Smith, Teresa R. Utterback, Owen White, Craig E. Rubens, Guido Grandi, Lawrence C. Madoff, Dennis L. Kasper, John L. Telford, Michael R. Wessels, Rino Rappuoli, and Claire M. Fraser PMCID: PMC1216834 Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation Vivien Measday, Kristin Baetz, Julie Guzzo, Karen Yuen, Teresa Kwok, Bilal Sheikh, Huiming Ding, Ryo Ueta, Trinh Hoac, Benjamin Cheng, Isabelle Pot, Amy Tong, Yuko Yamaguchi-Iwai, Charles Boone, Phil Hieter, and Brenda Andrews PMCID: PMC1236538 A nuclear degradation pathway controls the abundance of normal mRNAs in Saccharomyces cerevisiae Letian Kuai, Biswadip Das, and Fred Sherman PMCID: PMC1236574 Metastasis-associated protein 1 (MTA1) is an essential downstream effector of the c-MYC oncoprotein Xiao-yong Zhang, Lauren M. DeSalle, Jagruti H. Patel, Anthony J. Capobianco, Duonan Yu, Andrei Thomas-Tikhonenko, and Steven B. McMahon PMCID: PMC1236531 Immunology Regulation of TNF-related apoptosis-inducing ligand on primary CD4+ T cells by HIV-1: Role of type I IFN-producing plasmacytoid dendritic cells Jean-Philippe Herbeuval, Andrew W. Hardy, Adriano Boasso, Stephanie A. Anderson, Matthew J. Dolan, Michel Dy, and Gene M. Shearer PMCID: PMC1224361 HLA class I-restricted responses to vaccinia recognize a broad array of proteins mainly involved in virulence and viral gene regulation Carla Oseroff, Ferdynand Kos, Huynh-Hoa Bui, Bjoern Peters, Valerie Pasquetto, Jean Glenn, Tara Palmore, John Sidney, David C. Tscharke, Jack R. Bennink, Scott Southwood, Howard M. Grey, Jonathan W. Yewdell, and Alessandro Sette PMCID: PMC1236582 DNA polymerase θ contributes to the generation of C/G mutations during somatic hypermutation of Ig genes Keiji Masuda, Rika Ouchida, Arata Takeuchi, Takashi Saito, Haruhiko Koseki, Kiyoko Kawamura, Masatoshi Tagawa, Takeshi Tokuhisa, Takachika Azuma, and Jiyang O-Wang PMCID: PMC1236561 Pathogenic myelin oligodendrocyte glycoprotein antibodies recognize glycosylated epitopes and perturb oligodendrocyte physiology Cecilia B. Marta, Alfred R. Oliver, Rebecca A. Sweet, Steven E. Pfeiffer, and Nancy H. Ruddle PMCID: PMC1236555 Medical Sciences Gene expression profiling reveals a signaling role of glutathione in redox regulation Maddalena Fratelli, Leslie O. Goodwin, Ulf Andersson Ørom, Sarah Lombardi, Rossella Tonelli, Manuela Mengozzi, and Pietro Ghezzi PMCID: PMC1236550 Amplification of a chromatin remodeling gene, Rsf-1/HBXAP, in ovarian carcinoma Ie-Ming Shih, Jim Jinn-Chyuan Sheu, Antonio Santillan, Kentaro Nakayama, M. Jim Yen, Robert E. Bristow, Russell Vang, Giovanni Parmigiani, Robert J. Kurman, Claes G. Trope, Ben Davidson, and Tian-Li Wang PMCID: PMC1236547 Divergent responses of chondrocytes and endothelial cells to shear stress: Cross-talk among COX-2, the phase 2 response, and apoptosis Zachary R. Healy, Norman H. Lee, Xiangqun Gao, Mary B. Goldring, Paul Talalay, Thomas W. Kensler, and Konstantinos Konstantopoulos PMCID: PMC1236575 VEGF receptor 1 signaling is essential for osteoclast development and bone marrow formation in colony-stimulating factor 1-deficient mice Shumpei Niida, Takako Kondo, Sachie Hiratsuka, Shin-Ichi Hayashi, Norio Amizuka, Tetsuo Noda, Kyoji Ikeda, and Masabumi Shibuya PMCID: PMC1236539 Defective osteogenesis of the stromal stem cells predisposes CD18-null mice to osteoporosis Yasuo Miura, Masako Miura, Stan Gronthos, Matthew R. Allen, Chunzhang Cao, Thomas E. Uveges, Yanming Bi, Driss Ehirchiou, Angela Kortesidis, Songtao Shi, and Li Zhang PMCID: PMC1236524 The MLL fusion gene, MLL-AF4, regulates cyclin-dependent kinase inhibitor CDKN1B (p27kip1) expression Zhen-Biao Xia, Relja Popovic, Jing Chen, Catherine Theisler, Tara Stuart, Donna A. Santillan, Frank Erfurth, Manuel O. Diaz, and Nancy J. Zeleznik-Le PMCID: PMC1236570 Dual cancer-specific targeting strategy cures primary and distant breast carcinomas in nude mice Devanand Sarkar, Zao-zhong Su, Nicolaq Vozhilla, Eun Sook Park, Pankaj Gupta, and Paul B. Fisher PMCID: PMC1236587 Microbiology Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats Susanna K. P. Lau, Patrick C. Y. Woo, Kenneth S. M. Li, Yi Huang, Hoi-Wah Tsoi, Beatrice H. L. Wong, Samson S. Y. Wong, Suet-Yi Leung, Kwok-Hung Chan, and Kwok-Yung Yuen PMCID: PMC1236580 The Shigella flexneri effector OspG interferes with innate immune responses by targeting ubiquitin-conjugating enzymes Dong Wook Kim, Gerlinde Lenzen, Anne-Laure Page, Pierre Legrain, Philippe J. Sansonetti, and Claude Parsot PMCID: PMC1236552 Neuroscience The neuronal PAS domain protein 3 transcription factor controls FGF-mediated adult hippocampal neurogenesis in mice Andrew A. Pieper, Xinle Wu, Tina W. Han, Sandi Jo Estill, Quyen Dang, Leeju C. Wu, Sarah Reece-Fincanon, Carol A. Dudley, James A. Richardson, Daniel J. Brat, and Steven L. McKnight PMCID: PMC1216832 Mammalian sprouty proteins assemble into large monodisperse particles having the properties of intracellular nanobatteries Xinle Wu, Peter B. Alexander, Ying He, Masahide Kikkawa, Pia D. Vogel, and Steven L. McKnight PMCID: PMC1216833 From the Cover:
Imaging input and output of neocortical networks in vivo Jason N. D. Kerr, David Greenberg, and Fritjof Helmchen PMCID: PMC1201343 Human neural stem cells differentiate and promote locomotor recovery in spinal cord-injured mice Brian J. Cummings, Nobuko Uchida, Stanley J. Tamaki, Desirée L. Salazar, Mitra Hooshmand, Robert Summers, Fred H. Gage, and Aileen J. Anderson PMCID: PMC1216836 From the Cover:
Rapid inactivation of a moth pheromone Yuko Ishida and Walter S. Leal PMCID: PMC1216831 Multiple cyclin-dependent kinases signals are critical mediators of ischemia/hypoxic neuronal death in vitro and in vivo Juliet Rashidian, Grace Iyirhiaro, Hossein Aleyasin, Mario Rios, Inez Vincent, Steven Callaghan, Ross J. Bland, Ruth S. Slack, Matthew J. During, and David S. Park PMCID: PMC1236525 Connections of thalamic modulatory centers to the vocal control system of the zebra finch Eugene Akutagawa and Masakazu Konishi PMCID: PMC1236583 Excitatory monocyte chemoattractant protein-1 signaling is up-regulated in sensory neurons after chronic compression of the dorsal root ganglion Fletcher A. White, Jihu Sun, Stephen M. Waters, Chao Ma, Dongjun Ren, Matthew Ripsch, Jeremy Steflik, Daniel N. Cortright, Robert H. LaMotte, and Richard J. Miller PMCID: PMC1236537 EphA4 defines a class of excitatory locomotor-related interneurons Simon J. B. Butt, Line Lundfald, and Ole Kiehn PMCID: PMC1236535 Physiology Abnormal intrastore calcium signaling in chronic heart failure Zuzana Kubalova, Dmitry Terentyev, Serge Viatchenko-Karpinski, Yoshinori Nishijima, Inna Györke, Radmila Terentyeva, Daise N. Q. da Cuñha, Arun Sridhar, David S. Feldman, Robert L. Hamlin, Cynthia A. Carnes, and Sandor Györke PMCID: PMC1236548 Psychology Deficits in speech perception predict language learning impairment Johannes C. Ziegler, Catherine Pech-Georgel, Florence George, F.-Xavier Alario, and Christian Lorenzi PMCID: PMC1236551 Social Sciences Psychology Abstract number and arithmetic in preschool children Hilary Barth, Kristen La Mont, Jennifer Lipton, and Elizabeth S. Spelke PMCID: PMC1236560 Social Sciences INAUGURAL ARTICLE by a Recently Elected Academy Member: False beliefs about fattening foods can have healthy consequences Daniel M. Bernstein, Cara Laney, Erin K. Morris, and Elizabeth F. Loftus PMCID: PMC1236554 Corrections Proc Natl Acad Sci U S A. 2005 September 27; 102(39): 14122. Published online 2005 September 14. doi: 10.1073/pnas.0506921102.PMCID: PMC1236591 Corrects: Jonathan Kipnis, et al. T cell deficiency leads to cognitive dysfunction: Implications for therapeutic vaccination for schizophrenia and other psychiatric conditions. Proc Natl Acad Sci U S A. 2004 May 25; 101(21): 8180–8185. Proc Natl Acad Sci U S A. 2005 September 27; 102(39): 14122. Published online 2005 September 15. doi: 10.1073/pnas.0507239102.PMCID: PMC1236597 Corrects: Olivia du Roure, et al. Force mapping in epithelial cell migration. Proc Natl Acad Sci U S A. 2005 February 15; 102(7): 2390–2395. Proc Natl Acad Sci U S A. 2005 September 27; 102(39): 14122. Published online 2005 September 16. doi: 10.1073/pnas.0507555102.PMCID: PMC1236598 Corrects: Duncan J. Watts, et al. Multiscale, resurgent epidemics in a hierarchical metapopulation model. Proc Natl Acad Sci U S A. 2005 August 9; 102(32): 11157–11162. |
