| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 October 4; 102(40): 14123–14124. doi: 10.1073/iti4005102.PMCID: PMC1242343 Commentaries Imaging input and output dynamics of neocortical networks in vivo: Exciting times ahead Amiram Grinvald PMCID: PMC1242320 Effects of ionizing radiation in nonirradiated cells William F. Morgan and Marianne B. Sowa PMCID: PMC1242332 Profiles Profile of Tom A. Rapoport Tinsley H. Davis PMCID: PMC1242311 Profile of A. Catharine Ross Bijal Trivedi PMCID: PMC1242312 Physical Sciences Applied Mathematics Nonlinear system theory: Another look at dependence Wei Biao Wu PMCID: PMC1242319 Applied Physical Sciences Extracting subnanometer single shells from ultralong multiwalled carbon nanotubes Byung Hee Hong, Joshua P. Small, Meninder S. Purewal, Asher Mullokandov, Matthew Y. Sfeir, Feng Wang, Ju Young Lee, Tony F. Heinz, Louis E. Brus, Philip Kim, and Kwang S. Kim PMCID: PMC1242308 Shape transitions of fluid vesicles and red blood cells in capillary flows Hiroshi Noguchi and Gerhard Gompper PMCID: PMC1242298 Chemistry Sulfur accumulation in the timbers of King Henry VIII's warship Mary Rose: A pathway in the sulfur cycle of conservation concern Magnus Sandström, Farideh Jalilehvand, Emiliana Damian, Yvonne Fors, Ulrik Gelius, Mark Jones, and Murielle Salomé PMCID: PMC1234901 Unified description of temperature-dependent hydrogen-bond rearrangements in liquid water Jared D. Smith, Christopher D. Cappa, Kevin R. Wilson, Ronald C. Cohen, Phillip L. Geissler, and Richard J. Saykally PMCID: PMC1242322 Surface-mounted altitudinal molecular rotors in alternating electric field: Single-molecule parametric oscillator molecular dynamics Dominik Horinek and Josef Michl PMCID: PMC1242313 Environmental Sciences Detection of a bioluminescent milky sea from space Steven D. Miller, Steven H. D. Haddock, Christopher D. Elvidge, and Thomas F. Lee PMCID: PMC1242338 From the Cover:
Degassing Lakes Nyos and Monoun: Defusing certain disaster George W. Kling, William C. Evans, Greg Tanyileke, Minoru Kusakabe, Takeshi Ohba, Yutaka Yoshida, and Joseph V. Hell PMCID: PMC1242283 Physics From the Cover:
Giant-block twist grain boundary smectic phases J. Fernsler, L. Hough, R.-F. Shao, J. E. Maclennan, L. Navailles, M. Brunet, N. V. Madhusudana, O. Mondain-Monval, C. Boyer, J. Zasadzinski, J. A. Rego, D. M. Walba, and N. A. Clark PMCID: PMC1242277 Biological Sciences Anthropology Anterior tooth growth periods in Neandertals were comparable to those of modern humans Debbie Guatelli-Steinberg, Donald J. Reid, Thomas A. Bishop, and Clark Spencer Larsen PMCID: PMC1242286 Applied Biological Sciences From the Cover:
Biological effects in unirradiated human tissue induced by radiation damage up to 1 mm away Oleg V. Belyakov, Stephen A. Mitchell, Deep Parikh, Gerhard Randers-Pehrson, Stephen A. Marino, Sally A. Amundson, Charles R. Geard, and David J. Brenner PMCID: PMC1202386 Incorporation of the acrosome into the oocyte during intracytoplasmic sperm injection could be potentially hazardous to embryo development Kazuto Morozumi and Ryuzo Yanagimachi PMCID: PMC1242329 Biochemistry Targeting angiogenesis: Structural characterization and biological properties of a de novo engineered VEGF mimicking peptide Luca Domenico D'Andrea, Guido Iaccarino, Roberto Fattorusso, Daniela Sorriento, Concetta Carannante, Domenica Capasso, Bruno Trimarco, and Carlo Pedone PMCID: PMC1242306 Structure and reactivity of hydroxypropylphosphonic acid epoxidase in fosfomycin biosynthesis by a cation- and flavin-dependent mechanism Karen McLuskey, Scott Cameron, Friedrich Hammerschmidt, and William N. Hunter PMCID: PMC1234900 Effect of condensate formation on long-distance radical cation migration in DNA Prolay Das and Gary B. Schuster PMCID: PMC1242321 Structural basis of hereditary coproporphyria Dong-Sun Lee, Eva Flachsová, Michaela Bodnárová, Borries Demeler, Pavel Martásek, and C. S. Raman PMCID: PMC1224704 Amino acids mediate mTOR/raptor signaling through activation of class 3 phosphatidylinositol 3OH-kinase Takahiro Nobukuni, Manel Joaquin, Marta Roccio, Stephen G. Dann, So Young Kim, Pawan Gulati, Maya P. Byfield, Jonathan M. Backer, Francois Natt, Johannes L. Bos, Fried J. T. Zwartkruis, and George Thomas PMCID: PMC1242323 Inhibition of Aurora-B kinase activity by poly(ADP-ribosyl)ation in response to DNA damage Lucia Monaco, Ullas Kolthur-Seetharam, Romain Loury, Josiane Ménissier-de Murcia, Gilbert de Murcia, and Paolo Sassone-Corsi PMCID: PMC1242315 From the Cover:
Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains Christophe Pichon and Brice Felden PMCID: PMC1242290 In vitro assembly of the undecaprenylpyrophosphate-linked heptasaccharide for prokaryotic N-linked glycosylation Kerney Jebrell Glover, Eranthie Weerapana, and Barbara Imperiali PMCID: PMC1242339 Involvement of β-catenin and unusual behavior of CBP and p300 in glucocorticosteroid signaling in Schwann cells Cosima Fonte, Julien Grenier, Amalia Trousson, Anne Chauchereau, Olivier Lahuna, Etienne-Emile Baulieu, Michael Schumacher, and Charbel Massaad PMCID: PMC1242324 Biophysics A plausible model for the digital response of p53 to DNA damage Lan Ma, John Wagner, John Jeremy Rice, Wenwei Hu, Arnold J. Levine, and Gustavo A. Stolovitzky PMCID: PMC1242279 Intersheet rearrangement of polypeptides during nucleation of β-sheet aggregates Sarah A. Petty and Sean M. Decatur PMCID: PMC1242284 Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins Sanguk Kim, Tae-Joon Jeon, Amit Oberai, Duan Yang, Jacob J. Schmidt, and James U. Bowie PMCID: PMC1242278 Blinking and nonradiant dark fraction of water-soluble quantum dots in aqueous solution Jie Yao, Daniel R. Larson, Harshad D. Vishwasrao, Warren R. Zipfel, and Watt W. Webb PMCID: PMC1242317 Cell Biology INAUGURAL ARTICLE by a Recently Elected Academy Member: Recruitment of the p97 ATPase and ubiquitin ligases to the site of retrotranslocation at the endoplasmic reticulum membrane Yihong Ye, Yoko Shibata, Marjolein Kikkert, Sjaak van Voorden, Emmanuel Wiertz, and Tom A. Rapoport PMCID: PMC1242302 Diversification of stem cell molecular repertoire by alternative splicing Moshe Pritsker, Tirza T. Doniger, Laurie C. Kramer, Stephanie E. Westcot, and Ihor R. Lemischka PMCID: PMC1242282 Multiprotein complexes that link dislocation, ubiquitination, and extraction of misfolded proteins from the endoplasmic reticulum membrane Brendan N. Lilley and Hidde L. Ploegh PMCID: PMC1242303 Conservation of spermatogonial stem cell self-renewal signaling between mouse and rat Buom-Yong Ryu, Hiroshi Kubota, Mary R. Avarbock, and Ralph L. Brinster PMCID: PMC1242328 Notch interferes with the scaffold function of JNK-interacting protein 1 to inhibit the JNK signaling pathway Jin Woo Kim, Myung Jin Kim, Kwang Je Kim, Hee Jae Yun, Ji Soo Chae, Sang Gil Hwang, Tong-Shin Chang, Hee-Sae Park, Kang-Woo Lee, Pyung-Lim Han, Ssang-Goo Cho, Tae-Wan Kim, and Eui-Ju Choi PMCID: PMC1242280 Apoptosis caused by p53-induced protein with death domain (PIDD) depends on the death adapter protein RAIDD Christina Berube, Louis-Martin Boucher, Weili Ma, Andrew Wakeham, Leonardo Salmena, Razqallah Hakem, Wen-Chen Yeh, Tak W. Mak, and Samuel Benchimol PMCID: PMC1242316 Spatial regulation of the cAMP-dependent protein kinase during chemotactic cell migration Alan K. Howe, Linda C. Baldor, and Brian P. Hogan PMCID: PMC1242330 Developmental Biology From the Cover:
Cochaperone immunophilin FKBP52 is critical to uterine receptivity for embryo implantation Susanne Tranguch, Joyce Cheung-Flynn, Takiko Daikoku, Viravan Prapapanich, Marc B. Cox, Huirong Xie, Haibin Wang, Sanjoy K. Das, David F. Smith, and Sudhansu K. Dey PMCID: PMC1242310 Evolution Highways of gene sharing in prokaryotes Robert G. Beiko, Timothy J. Harlow, and Mark A. Ragan PMCID: PMC1242295 Why highly expressed proteins evolve slowly D. Allan Drummond, Jesse D. Bloom, Christoph Adami, Claus O. Wilke, and Frances H. Arnold PMCID: PMC1242296 Genetics Sequence survey of receptor tyrosine kinases reveals mutations in glioblastomas Vikki Rand, Jiaqi Huang, Tim Stockwell, Steve Ferriera, Oleksandr Buzko, Samuel Levy, Dana Busam, Kelvin Li, Jennifer B. Edwards, Charles Eberhart, Kathleen M. Murphy, Alexia Tsiamouri, Karen Beeson, Andrew J. G. Simpson, J. Craig Venter, Gregory J. Riggins, and Robert L. Strausberg PMCID: PMC1242336 Expression of DNA polymerase β cancer-associated variants in mouse cells results in cellular transformation Joann B. Sweasy, Tieming Lang, Daniela Starcevic, Ka-Wai Sun, Char-Chang Lai, Daniel DiMaio, and Shibani Dalal PMCID: PMC1242307 Immunology INAUGURAL ARTICLE by a Recently Elected Academy Member: Vitamin A and immune function: Retinoic acid modulates population dynamics in antigen receptor and CD38-stimulated splenic B cells Qiuyan Chen and A. Catharine Ross PMCID: PMC1242304 Revision of T cell receptor α chain genes is required for normal T lymphocyte development Ching-Yu Huang, Barry P. Sleckman, and Osami Kanagawa PMCID: PMC1242309 Elucidation of IgH intronic enhancer functions via germ-line deletion Thomas Perlot, Frederick W. Alt, Craig H. Bassing, Heikyung Suh, and Eric Pinaud PMCID: PMC1242331 Partner-regulated interaction of IFN regulatory factor 8 with chromatin visualized in live macrophages Leopoldo Laricchia-Robbio, Tomohiko Tamura, Tatiana Karpova, Brian L. Sprague, James G. McNally, and Keiko Ozato PMCID: PMC1242294 Innate signals compensate for the absence of PKC-θ during in vivo CD8+ T cell effector and memory responses Benjamin J. Marsland, Chiara Nembrini, Nicole Schmitz, Brian Abel, Stefan Krautwald, Martin F. Bachmann, and Manfred Kopf PMCID: PMC1242314 Human airway epithelial cell determinants of survival and functional phenotype for primary human mast cells F. H. Hsieh, P. Sharma, A. Gibbons, T. Goggans, S. C. Erzurum, and S. J. Haque PMCID: PMC1242292 Medical Sciences The ryanodine receptor mediates early zymogen activation in pancreatitis Sohail Z. Husain, Priyajit Prasad, Wayne M. Grant, Thomas R. Kolodecik, Michael H. Nathanson, and Fred S. Gorelick PMCID: PMC1242288 Rapid directional shift of mitochondrial DNA heteroplasmy in animal tissues by a mitochondrially targeted restriction endonuclease Maria Pilar Bayona-Bafaluy, Bas Blits, Brendan J. Battersby, Eric A. Shoubridge, and Carlos T. Moraes PMCID: PMC1242285 Dissociation of telomerase activity and telomere length maintenance in primitive human hematopoietic cells J. C. Y. Wang, J. K. Warner, N. Erdmann, P. M. Lansdorp, L. Harrington, and J. E. Dick PMCID: PMC1242297 Use of gene expression profiling to direct in vivo molecular imaging of lung cancer Jan Grimm, David G. Kirsch, Stephen D. Windsor, Carla F. Bender Kim, Philip M. Santiago, Vasilis Ntziachristos, Tyler Jacks, and Ralph Weissleder PMCID: PMC1242291 Role for macrophage migration inhibitory factor in asthma Y. Mizue, S. Ghani, L. Leng, C. McDonald, P. Kong, J. Baugh, S. J. Lane, J. Craft, J. Nishihira, S. C. Donnelly, Z. Zhu, and R. Bucala PMCID: PMC1242335 Inhibiting farnesylation reverses the nuclear morphology defect in a HeLa cell model for Hutchinson-Gilford progeria syndrome Monica P. Mallampalli, Gregory Huyer, Pravin Bendale, Michael H. Gelb, and Susan Michaelis PMCID: PMC1242289 Microbiology A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levels Jason W. Hickman, Delia F. Tifrea, and Caroline S. Harwood PMCID: PMC1234902 DNA replication during sporulation in Myxococcus xanthus fruiting bodies Linfong Tzeng and Mitchell Singer PMCID: PMC1228275 Neuroscience Long-term potentiation of exogenous glutamate responses at single dendritic spines Ashish A. Bagal, Joseph P. Y. Kao, Cha-Min Tang, and Scott M. Thompson PMCID: PMC1242281 Clusters of interacting receptors can stabilize synaptic efficacies Harel Z. Shouval PMCID: PMC1242325 Sex and estrogenic effects on coexpression of mRNAs in single ventromedial hypothalamic neurons N. Devidze, J. A. Mong, A. M. Jasnow, L.-M. Kow, and D. W. Pfaff PMCID: PMC1242333 Pharmacology C-type natriuretic peptide inhibits leukocyte recruitment and platelet-leukocyte interactions via suppression of P-selectin expression Ramona S. Scotland, Marc Cohen, Paul Foster, Matthew Lovell, Anthony Mathur, Amrita Ahluwalia, and Adrian J. Hobbs PMCID: PMC1242301 Plant Biology Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops Gareth S. Catchpole, Manfred Beckmann, David P. Enot, Madhav Mondhe, Britta Zywicki, Janet Taylor, Nigel Hardy, Aileen Smith, Ross D. King, Douglas B. Kell, Oliver Fiehn, and John Draper PMCID: PMC1242293 Cysteine protease mcII-Pa executes programmed cell death during plant embryogenesis Peter V. Bozhkov, Maria F. Suarez, Lada H. Filonova, Geoffrey Daniel, Andrey A. Zamyatnin, Jr., Salvador Rodriguez-Nieto, Boris Zhivotovsky, and Andrei Smertenko PMCID: PMC1242326 Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis Cheng-Ran Xu, Cui Liu, Yi-Lan Wang, Lin-Chen Li, Wen-Qian Chen, Zhi-Hong Xu, and Shu-Nong Bai PMCID: PMC1242287 Corrections Proc Natl Acad Sci U S A. 2005 October 4; 102(40): 14475. doi: 10.1073/pnas.0507247102.PMCID: PMC1242337 Corrects: M. Anaul Kabir, et al. Loss and gain of chromosome 5 controls growth of Candida albicans on sorbose due to dispersed redundant negative regulators. Proc Natl Acad Sci U S A. 2005 August 23; 102(34): 12147–12152. Proc Natl Acad Sci U S A. 2005 October 4; 102(40): 14475. doi: 10.1073/pnas.0507361102.PMCID: PMC1242340 Corrects: Guy Sella, et al. The application of statistical physics to evolutionary biology. Proc Natl Acad Sci U S A. 2005 July 5; 102(27): 9541–9546. Proc Natl Acad Sci U S A. 2005 October 4; 102(40): 14475. doi: 10.1073/pnas.0507472102.PMCID: PMC1242341 Corrects: Jonathan E. Kohn, et al. Random-coil behavior and the dimensions of chemically unfolded proteins. Proc Natl Acad Sci U S A. 2004 August 24; 101(34): 12491–12496. Proc Natl Acad Sci U S A. 2005 October 4; 102(40): 14475. doi: 10.1073/pnas.0507559102.PMCID: PMC1242342 Corrects: Lulu Huang, et al. Kernel energy method: Application to insulin. Proc Natl Acad Sci U S A. 2005 September 6; 102(36): 12690–12693. |
