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Comparative Toxicogenomics Database (CTD)

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Environmental Health Perspectives Volume 111, Number 6, May 2003
Environmental Health Perspectives Toxicogenomics May 2003 Researchers are adding daily to the wealth of genomic data from humans and other organisms. The Focus (p. A340) looks at how the field of bioinformatics is developing to help researchers mine these data and polish them into usable forms to advance toxicogenomics.

Purchase This Issue

  • Bioinformatics: Data Revolution
    A 340
  • NCT's Roadmap for Toxicogenomics
    A 338
  • Metals Yield Signature Gene Expression
    A348 & 825

Perspectives

Editorials

  • Toxicogenomics: An EHP Section-Kenneth S. Ramos and Thomas J. Goehl
    p. A 328 [HTML] [ Download PDF]

  • Model Selection in Genomics-Ilya Shmulevich
    p. A 328 [HTML] [ Download PDF]

  • On the 50th Anniversary of Solving the Structure of DNA-Leona D. Samson
    p. A 328 [HTML] [ Download PDF]

Environews


Forum

  • Toxicogenomics: Roadblocks and New Directions
  • Rapamycin Throws a Master Switch
  • TXG at SOT
  • Putting Proteins in One Place
    p. A 334
  • TXGnet: Bioinformatics Organization

    [HTML] [ Download PDF]

NCT Update Focus
    Data Explosion: Bringing Order to Chaos with Bioinformatics
    p. A 340

    [HTML] [ Download PDF]

Science Selections

  • Liver Library
  • Monitoring Estrogenic Effects
  • Metals Leave Their Mark
    p. A 346

    [HTML] [Download PDF]

Toxicogenomics


Commentaries


    The Comparative Toxicogenomics Database (CTD)
    Carolyn J. Mattingly, Glenn T. Colby, John N. Forrest, and James L. Boyer
    [HTML] [ Download PDF]

    The Human Proteome Organization (HUPO) and Environmental Health
    B. Alex Merrick
    [HTML] [ Download PDF]

    Application of Toxicogenomic Analysis to Risk Assessment of Delayed Long-Term Effects of Multiple Chemicals, Including Endocrine Disruptors in Human Fetuses
    Chisato Mori, Masatoshi Komiyama, Tetsuya Adachi, Kenichi Sakurai, Daisuke Nishimura, Kyoka Takashima, and Emiko Todaka
    [HTML] [ Download PDF]

Review

    Systems Toxicology and the Chemical Effects in Biological Systems (CEBS) Knowledge Base
    Michael Waters, Gary Boorman, Pierre Bushel, Michael Cunningham, Rick Irwin, Alex Merrick, Kenneth Olden, Richard Paules, James Selkirk, Stanley Stasiewicz, Brenda Weis, Ben Van Houten, Nigel Walker, and Raymond Tennant
    [HTML] [ Download PDF]
Articles

    Genomic and Proteomic Profiling of Responses to Toxic Metals in Human Lung Cells
    Angeline S. Andrew, Amy J. Warren, Aaron Barchowsky, Kaili A.Temple, Linda Klei, Nicole V. Soucy, Kimberley A. O'Hara, and Joshua W. Hamilton
    [HTML] [ Download PDF]

    Expression Profiling of Estrogenic Compounds Using a Sheepshead Minnow cDNA Macroarray
    Patrick Larkin, Leroy C. Folmar, Michael J. Hemmer, Arianna J. Poston, and Nancy D. Denslow
    [HTML] [ Download PDF]

    Gene Expression Profiles Associated with Inflammation, Fibrosis, and Cholestasis in Mouse Liver after Griseofulvin
    Timothy W. Gant, Petra R. Baus, Bruce Clothier, Joan Riley, Reginald Davies, David J. Judah, Richard E. Edwards, Elisabeth George, Peter Greaves, and Andrew G. Smith
    [HTML] [ Download PDF]

    Intrinsic Hepatic Phenotype Associated with the Cyp1a2 Gene as Shown by cDNA Expression Microarray Analysis of the Knockout Mouse
    Andrew G. Smith, Reginald Davies, Timothy P. Dalton, Marian L. Miller, David Judah, Joan Riley, Timothy Gant, and Daniel W. Nebert
    [HTML] [ Download PDF]

    Development of a DNA Microarray for Toxicology Based on Hepatotoxin-Regulated Sequences
    Jeffrey F. Waring, Guy Cavet, Robert A. Jolly, Jeff McDowell, Hongye Dai, Rita Ciurlionis, Chunsheng Zhang, Roland Stoughton, Pek Lum, Allan Ferguson, Christopher J. Roberts, and Roger G. Ulrich
    [HTML] [ Download PDF]

Meeting Report

    Exploiting Genome Data to Understand the Function, Regulation, and Evolutionary Origins of Toxicologically Relevant Genes
    Nazzareno Ballatori, James L. Boyer, and John C. Rockett
    [HTML] [ Download PDF]

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