| | Perspective Outlook on Thailand's Genomics and Computational Biology Research and Development Wannipha Tongsima, Sissades Tongsima, and Prasit Palittapongarnpim PMCID: PMC2446437 Computational Biology Resources Lack Persistence and Usability Stella Veretnik, J. Lynn Fink, and Philip E. Bourne PMCID: PMC2443418 Message from ISCB ISCB Honors David Haussler and Aviv Regev Clare Sansom and B. J. Morrison McKay PMCID: PMC2536508 Review Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology Karthik Devarajan PMCID: PMC2447881 Research Articles Kinetic Modeling of the Assembly, Dynamic Steady State, and Contraction of the FtsZ Ring in Prokaryotic Cytokinesis Ivan V. Surovtsev, Jeffrey J. Morgan, and Paul A. Lindahl PMCID: PMC2432035 Dynamics of Immune Escape during HIV/SIV Infection Christian L. Althaus and Rob J. De Boer PMCID: PMC2423483 Circadian Phase Resetting via Single and Multiple Control Targets Neda Bagheri, Jörg Stelling, and Francis J. Doyle, III PMCID: PMC2536509 Local Function Conservation in Sequence and Structure Space Nils Weinhold, Oliver Sander, Francisco S. Domingues, Thomas Lengauer, and Ingolf Sommer PMCID: PMC2427199 Increased Brain Signal Variability Accompanies Lower Behavioral Variability in Development Anthony Randal McIntosh, Natasa Kovacevic, and Roxane J. Itier PMCID: PMC2429973 Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, and Ole Lund PMCID: PMC2430535 Unraveling Protein Networks with Power Graph Analysis Loïc Royer, Matthias Reimann, Bill Andreopoulos, and Michael Schroeder PMCID: PMC2424176 The Generation of Promoter-Mediated Transcriptional Noise in Bacteria Namiko Mitarai, Ian B. Dodd, Michael T. Crooks, and Kim Sneppen PMCID: PMC2442219 The Ascent of the Abundant: How Mutational Networks Constrain Evolution Matthew C. Cowperthwaite, Evan P. Economo, William R. Harcombe, Eric L. Miller, and Lauren Ancel Meyers PMCID: PMC2430528 Active Nuclear Receptors Exhibit Highly Correlated AF-2 Domain Motions Denise G. Teotico, Monica L. Frazier, Feng Ding, Nikolay V. Dokholyan, Brenda R. S. Temple, and Matthew R. Redinbo PMCID: PMC2432469 Evolution of Evolvability in Gene Regulatory Networks Anton Crombach and Paulien Hogeweg PMCID: PMC2432032 Decoding of Superimposed Traces Produced by Direct Sequencing of Heterozygous Indels Dmitry A. Dmitriev and Roman A. Rakitov PMCID: PMC2429969 Probing the Extent of Randomness in Protein Interaction Networks Joseph Ivanic, Anders Wallqvist, and Jaques Reifman PMCID: PMC2527968 Similarity Queries for Temporal Toxicogenomic Expression Profiles Adam A. Smith, Aaron Vollrath, Christopher A. Bradfield, and Mark Craven PMCID: PMC2453325 Predicting and Validating Protein Interactions Using Network Structure Pao-Yang Chen, Charlotte M. Deane, and Gesine Reinert PMCID: PMC2435280 Intrinsic Gain Modulation and Adaptive Neural Coding Sungho Hong, Brian Nils Lundstrom, and Adrienne L. Fairhall PMCID: PMC2440820 Using Expression Profiles of Caenorhabditis elegans
Neurons To Identify Genes That Mediate Synaptic Connectivity Leehod Baruch, Shalev Itzkovitz, Michal Golan-Mashiach, Ehud Shapiro, and Eran Segal PMCID: PMC2517614 Memory Switches in Chemical Reaction Space Naren Ramakrishnan and Upinder S. Bhalla PMCID: PMC2440819 Emergent Synchronous Bursting of Oxytocin Neuronal Network Enrico Rossoni, Jianfeng Feng, Brunello Tirozzi, David Brown, Gareth Leng, and Françoise Moos PMCID: PMC2440533 Isolation-by-Distance and Outbreeding Depression Are Sufficient to Drive Parapatric Speciation in the Absence of Environmental Influences Guy A. Hoelzer, Rich Drewes, Jeffrey Meier, and René Doursat PMCID: PMC2440541 The Spatiotemporal Pattern of Src Activation at Lipid Rafts Revealed by Diffusion-Corrected FRET Imaging Shaoying Lu, Mingxing Ouyang, Jihye Seong, Jin Zhang, Shu Chien, and Yingxiao Wang PMCID: PMC2517613 Optimal Compensation for Temporal Uncertainty in Movement Planning Todd E. Hudson, Laurence T. Maloney, and Michael S. Landy PMCID: PMC2442880 Protein Complex Evolution Does Not Involve Extensive Network Rewiring Teunis J. P. van Dam and Berend Snel PMCID: PMC2517612 Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms Tammy M. K. Cheng, Yu-En Lu, Michele Vendruscolo, Pietro Lio', and Tom L. Blundell PMCID: PMC2447880 Correction Correction: Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation Bin Kang, Yuan-Yuan Li, Xiao Chang, Lei Liu, and Yi-Xue Li PMCID: PMC2648584 Corrects: Bin Kang, et al. Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation. PLoS Comput Biol. 2008 March; 4(3): e1000019. |
