PLoS Comput Biol Volume 4(6); June 2008

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Volume 4(6); June 2008

Editorials

Ten Simple Rules for Organizing a Scientific Meeting

Manuel Corpas, Nils Gehlenborg, Sarath Chandra Janga, and Philip E. Bourne

PLoS Comput Biol. 2008 June; 4(6): e1000080. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000080.

PMCID: PMC2367436

| Full Text | PDF–67K |

How To Advance Open International Scientific Exchange

Barbara Bryant

PLoS Comput Biol. 2008 June; 4(6): e1000097. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000097.

PMCID: PMC2427201

| Full Text | PDF–61K |

Message from ISCB

ISMB 2008 Toronto

Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, and Burkhard Rost

PLoS Comput Biol. 2008 June; 4(6): e1000094. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000094.

PMCID: PMC2427177

| Full Text | PDF–328K |

Research Articles

A Comparative Computer Simulation of Dendritic Morphology

Duncan E. Donohue and Giorgio A. Ascoli

PLoS Comput Biol. 2008 June; 4(6): e1000089. Published online 2008 June 6. doi: 10.1371/journal.pcbi.1000089.

PMCID: PMC2376061

| Abstract | Full Text | PDF–828K |

CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing

Pradipta Ray, Suyash Shringarpure, Mladen Kolar, and Eric P. Xing

PLoS Comput Biol. 2008 June; 4(6): e1000090. Published online 2008 June 6. doi: 10.1371/journal.pcbi.1000090.

PMCID: PMC2396503

Integrated Information in Discrete Dynamical Systems: Motivation and Theoretical Framework

David Balduzzi and Giulio Tononi

PLoS Comput Biol. 2008 June; 4(6): e1000091. Published online 2008 June 13. doi: 10.1371/journal.pcbi.1000091.

PMCID: PMC2386970

Machine-Learning Approaches for Classifying Haplogroup from Y Chromosome STR Data

Joseph Schlecht, Matthew E. Kaplan, Kobus Barnard, Tatiana Karafet, Michael F. Hammer, and Nirav C. Merchant

PLoS Comput Biol. 2008 June; 4(6): e1000093. Published online 2008 June 13. doi: 10.1371/journal.pcbi.1000093.

PMCID: PMC2396484

Dynamics and Potential Impact of the Immune Response to Chronic Myelogenous Leukemia

Peter S. Kim, Peter P. Lee, and Doron Levy

PLoS Comput Biol. 2008 June; 4(6): e1000095. Published online 2008 June 20. doi: 10.1371/journal.pcbi.1000095.

PMCID: PMC2427197

| Abstract | Full Text | PDF–535K |

Model-Based Hypothesis Testing of Key Mechanisms in Initial Phase of Insulin Signaling

Gunnar Cedersund, Jacob Roll, Erik Ulfhielm, Anna Danielsson, Henrik Tidefelt, and Peter Strålfors

PLoS Comput Biol. 2008 June; 4(6): e1000096. Published online 2008 June 20. doi: 10.1371/journal.pcbi.1000096.

PMCID: PMC2424138

How To Record a Million Synaptic Weights in a Hippocampal Slice

Upinder S. Bhalla

PLoS Comput Biol. 2008 June; 4(6): e1000098. Published online 2008 June 20. doi: 10.1371/journal.pcbi.1000098.

PMCID: PMC2409153

Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins

Jason W. Locasale and Arup K. Chakraborty

PLoS Comput Biol. 2008 June; 4(6): e1000099. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000099.

PMCID: PMC2427176

| Abstract | Full Text | PDF–426K |

Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease

Kaustubh Supekar, Vinod Menon, Daniel Rubin, Mark Musen, and Michael D. Greicius

PLoS Comput Biol. 2008 June; 4(6): e1000100. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000100.

PMCID: PMC2435273

Corrections

Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks

Jong Min Lee, Erwin P. Gianchandani, James A. Eddy, and Jason A. Papin

PLoS Comput Biol. 2008 June; 4(6): 10.1371/annotation/5594348b-de00-446a-bdd0-ec56e70b3553. Published online 2008 June 10. doi: 10.1371/annotation/5594348b-de00-446a-bdd0-ec56e70b3553.

PMCID: PMC2645273

Corrects: Jong Min Lee, et al. Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks. PLoS Comput Biol. 2008 May; 4(5): e1000086.

| Correction | Original Article |

Correction: Astrocytes Optimize the Synaptic Transmission of Information

Suhita Nadkarni, Peter Jung, and Herbert Levine

PLoS Comput Biol. 2008 June; 4(6): 10.1371/annotation/ec07378d-fd1b-45b8-bfed-1a20c9fd5d26. Published online 2008 June 23. doi: 10.1371/annotation/ec07378d-fd1b-45b8-bfed-1a20c9fd5d26.

PMCID: PMC2560510

Corrects: Suhita Nadkarni, et al. Astrocytes Optimize the Synaptic Transmission of Information. PLoS Comput Biol. 2008 May; 4(5): e1000088.

| Correction | Original Article |

Other Issues: previous | next | latest | archive

		Other Issues: previous \| next \| latest \| archive Volume 4(6); June 2008 Editorials Ten Simple Rules for Organizing a Scientific Meeting Manuel Corpas, Nils Gehlenborg, Sarath Chandra Janga, and Philip E. Bourne PLoS Comput Biol. 2008 June; 4(6): e1000080. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000080. PMCID: PMC2367436 \| Full Text \| PDF–67K \| How To Advance Open International Scientific Exchange Barbara Bryant PLoS Comput Biol. 2008 June; 4(6): e1000097. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000097. PMCID: PMC2427201 \| Full Text \| PDF–61K \| Message from ISCB ISMB 2008 Toronto Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, and Burkhard Rost PLoS Comput Biol. 2008 June; 4(6): e1000094. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000094. PMCID: PMC2427177 \| Full Text \| PDF–328K \| Research Articles A Comparative Computer Simulation of Dendritic Morphology Duncan E. Donohue and Giorgio A. Ascoli PLoS Comput Biol. 2008 June; 4(6): e1000089. Published online 2008 June 6. doi: 10.1371/journal.pcbi.1000089. PMCID: PMC2376061 \| Abstract \| Full Text \| PDF–828K \| CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing Pradipta Ray, Suyash Shringarpure, Mladen Kolar, and Eric P. Xing PLoS Comput Biol. 2008 June; 4(6): e1000090. Published online 2008 June 6. doi: 10.1371/journal.pcbi.1000090. PMCID: PMC2396503 \| Abstract \| Full Text \| PDF–1.1M \| Supplementary Material \| Integrated Information in Discrete Dynamical Systems: Motivation and Theoretical Framework David Balduzzi and Giulio Tononi PLoS Comput Biol. 2008 June; 4(6): e1000091. Published online 2008 June 13. doi: 10.1371/journal.pcbi.1000091. PMCID: PMC2386970 \| Abstract \| Full Text \| PDF–743K \| Supplementary Material \| Machine-Learning Approaches for Classifying Haplogroup from Y Chromosome STR Data Joseph Schlecht, Matthew E. Kaplan, Kobus Barnard, Tatiana Karafet, Michael F. Hammer, and Nirav C. Merchant PLoS Comput Biol. 2008 June; 4(6): e1000093. Published online 2008 June 13. doi: 10.1371/journal.pcbi.1000093. PMCID: PMC2396484 \| Abstract \| Full Text \| PDF–430K \| Supplementary Material \| Dynamics and Potential Impact of the Immune Response to Chronic Myelogenous Leukemia Peter S. Kim, Peter P. Lee, and Doron Levy PLoS Comput Biol. 2008 June; 4(6): e1000095. Published online 2008 June 20. doi: 10.1371/journal.pcbi.1000095. PMCID: PMC2427197 \| Abstract \| Full Text \| PDF–535K \| Model-Based Hypothesis Testing of Key Mechanisms in Initial Phase of Insulin Signaling Gunnar Cedersund, Jacob Roll, Erik Ulfhielm, Anna Danielsson, Henrik Tidefelt, and Peter Strålfors PLoS Comput Biol. 2008 June; 4(6): e1000096. Published online 2008 June 20. doi: 10.1371/journal.pcbi.1000096. PMCID: PMC2424138 \| Abstract \| Full Text \| PDF–277K \| Supplementary Material \| How To Record a Million Synaptic Weights in a Hippocampal Slice Upinder S. Bhalla PLoS Comput Biol. 2008 June; 4(6): e1000098. Published online 2008 June 20. doi: 10.1371/journal.pcbi.1000098. PMCID: PMC2409153 \| Abstract \| Full Text \| PDF–672K \| Supplementary Material \| Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins Jason W. Locasale and Arup K. Chakraborty PLoS Comput Biol. 2008 June; 4(6): e1000099. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000099. PMCID: PMC2427176 \| Abstract \| Full Text \| PDF–426K \| Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease Kaustubh Supekar, Vinod Menon, Daniel Rubin, Mark Musen, and Michael D. Greicius PLoS Comput Biol. 2008 June; 4(6): e1000100. Published online 2008 June 27. doi: 10.1371/journal.pcbi.1000100. PMCID: PMC2435273 \| Abstract \| Full Text \| PDF–431K \| Supplementary Material \| Corrections Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks Jong Min Lee, Erwin P. Gianchandani, James A. Eddy, and Jason A. Papin PLoS Comput Biol. 2008 June; 4(6): 10.1371/annotation/5594348b-de00-446a-bdd0-ec56e70b3553. Published online 2008 June 10. doi: 10.1371/annotation/5594348b-de00-446a-bdd0-ec56e70b3553. PMCID: PMC2645273 Corrects: Jong Min Lee, et al. Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks. PLoS Comput Biol. 2008 May; 4(5): e1000086. \| Correction \| Original Article \| Correction: Astrocytes Optimize the Synaptic Transmission of Information Suhita Nadkarni, Peter Jung, and Herbert Levine PLoS Comput Biol. 2008 June; 4(6): 10.1371/annotation/ec07378d-fd1b-45b8-bfed-1a20c9fd5d26. Published online 2008 June 23. doi: 10.1371/annotation/ec07378d-fd1b-45b8-bfed-1a20c9fd5d26. PMCID: PMC2560510 Corrects: Suhita Nadkarni, et al. Astrocytes Optimize the Synaptic Transmission of Information. PLoS Comput Biol. 2008 May; 4(5): e1000088. \| Correction \| Original Article \|
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