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CCAP BAC Clones

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Chromosome X


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
Xp22.32b RP11-366M24 chrX 5Mb AZ303248 SP6,
AZ303247 T7
AC078956 DXS1118E
Xp22.31d~22.31e RP11-383I22 chrX 9Mb CL423317 T7,
CL423315 SP6,
AQ533276 SP6
  DXS1375
Xp22.2 RP11-308F2 chrX 14Mb CL423280 SP6,
CL423284 T7
  DXS7951
Xp22.2 RP11-382D24 chrX 12Mb AZ254489 T7,
AZ254490 SP6
  DXS7730
Xp22.13d~22.13e RP11-568P9 chrX 17Mb AZ254682 T7,
AZ303377 SP6
  DXS7793
Xp22.12b RP11-482C1 chrX 19Mb AZ303227 T7,
AQ629987 T7,
AQ629984 SP6,
AZ303228 SP6
  DXS8264+
Xp22.12a~22.12b RP11-507P24 chrX 20Mb AZ515683 SP6+,
AZ303290 T7
  DXS7786
Xp22.12a RP11-497C10 chrX 21Mb AZ254653 SP6,
AZ254652 T7
  DXS7480
Xp21.3d RP11-26L4 chrX 26Mb B84600 T7,
B84599 SP6
AC022356 
Xp21.3b RP11-487M22 chrX 28Mb AZ301104 T7,
AQ631865 T7,
AZ301105 SP6
  DXS7926
Xp21.2 RP11-46A23 chrX 31Mb AQ198399,
AQ198403
  SHGC-1505
Xp21.1e~21.2a RP11-509C1 chrX 31Mb AZ303291 T7,
AZ303292 SP6
  DXS7826
Xp21.1a RP11-495K15 chrX 37Mb AZ303207 T7,
AZ303208 SP6
  RH35775
Xp11.4e RP11-506C6 chrX 38Mb AZ303203 T7,
AZ303204 SP6
  DXS7611
Xp11.4d~11.4e RP11-429N5 chrX 39Mb AZ254511 T7,
AQ551510 T7,
AQ551497 SP6,
AZ254512 SP6
  SWXD3103
Xp11.4a RP11-299D7 chrX 40Mb AZ254436 T7+,
AZ254437 SP6+,
AQ504705 SP6
  RH38747
Xp11.3b RP11-384A17 chrX 43Mb AZ254494 SP6,
AQ533314 T7,
AZ254493 T7
  RH63518+
Xp11.3a RP11-531L8 chrX 44Mb AZ303205 T7,
AZ303206 SP6
  RH16599
Xp11.23f RP11-466C12 chrX 47Mb AZ254479 T7,
AQ635914 SP6,
AZ254480 SP6
  DXS7629
Xp11.22c~11.23a RP11-528A24 chrX 48Mb AZ301109 SP6,
AZ301108 T7
  DXS1331+
Xp11.22a RP11-22B10 chrX 51Mb AQ009390 T7,
B92169 SP6,
B86117 SP6
AL929101 
Xp11.21a RP11-292J24 chrX 54Mb AZ301091 T7,
CL423347 T7,
CL423344 SP6
  DXS7159E
Xp11.1a RP11-431N15 chrX 56Mb AZ254513 T7,
AZ254514 SP6
AL354793 RH25723
Xq11.1b RP11-434B14 chrX 64Mb AZ254515 T7,
AQ552291 T7,
AQ552290 SP6,
AZ254516 SP6
  DXS7086
Xq11.1b RP11-434B14 chrY 57Mb AQ552290 SP6,
AZ254516 SP6,
AZ254515 T7*,
AQ552291 T7*
  DXS7086*
Xq12a RP11-419G1 chrX 67Mb AZ254505 T7,
AZ254506 SP6
  DXS7838
Xq13.1d RP11-402P6 chrX 70Mb AZ254497 T7,
AZ254498 SP6
BX276092 DXS1517+
Xq13.1e RP11-436L1 chrX 71Mb AZ254646 SP6,
AZ254645 T7
  DXS1377
Xq13.2a RP11-451F6 chrX 73Mb AQ586104 SP6+,
AZ254477 T7,
AZ254478 SP6
  DXS1103E
Xq13.3b RP11-477B2 chrX 75Mb AZ254486 SP6,
AQ636732 SP6,
AZ254485 T7,
AQ636735 T7
  DXS1383
Xq21.1a~21.1b RP11-297K23 chrX 78Mb AZ254434 T7+,
AZ254435 SP6+
  DXS6954
Xq21.1d RP11-54F22 chrX 83Mb AQ082140,
AQ082142 T7
AL389887 DXS7135
Xq21.31b RP11-567N15 chrX 87Mb AZ254681 SP6,
AZ254680 T7
  DXS7695
Xq21.32a RP11-483J19 chrX 92Mb AZ303289 SP6,
AQ629407 SP6,
AQ629410 T7,
AZ303288 T7
  DXS7552
Xq21.33b~21.33c RP11-335H4 chrX 94Mb AZ254448 T7+,
AZ254449 SP6+
  DXS1398
Xq21.33c~21.33d RP11-379J18 chrX 97Mb AZ254473 T7+,
AZ254474 SP6+,
AQ533759 T7,
AQ533757 SP6
  DXS1465
Xq21.33d~22.1a RP11-508G21 chrX 99Mb AZ303375 SP6,
AZ515684 T7
  DXS7735
Xq22.1b~22.1c RP11-467H14 chrX 101Mb AZ254649 SP6,
AQ630970 SP6,
AZ254648 T7,
AQ630973 T7
  sWXD3584
Xq22.2a RP11-572H24 chrX 103Mb AZ254683 T7,
AZ254684 SP6
  DXS1460
Xq22.2b~22.3a RP11-452M1 chrX 106Mb AZ301089 SP6,
AZ254647 T7
  DXS1456
Xq22.3c RP11-513O15 chrX 110Mb AZ254657 T7,
AZ254658 SP6
  DXS7357
Xq23c RP11-528G12 chrX 114Mb AZ303229 T7,
AZ303230 SP6
  DXS8297+
Xq23d~23e RP11-491C15 chrX 116Mb AZ303300 SP6,
AZ303299 T7
  DXS7319
Xq23e~24a RP11-331F17 chrX 116Mb AZ254446 T7+,
AZ254447 SP6+
  DXS7918
Xq24c RP11-561J7 chrX 117Mb AZ254675 SP6,
AZ254674 T7
  DXS7274
Xq24e~25a RP11-423F7 chrX 119Mb AZ254507 T7,
AZ254508 SP6,
AQ549465 SP6
  stSG2986
Xq25a RP11-531P11 chrX 120Mb AZ254665 T7,
AZ254666 SP6
  DXS7316
Xq25a~25b RP11-526E6 chrX 122Mb AZ254663 T7,
AZ254664 SP6
  DXS7322
Xq25c RP11-325K14 chrX 122Mb AZ254440 T7+,
AZ254441 SP6+,
AQ536948 T7
  DXS7906
Xq25f RP11-488B15 chrX 124Mb AZ303218 SP6,
AZ303217 T7
  RH63424
Xq25h~26.1a RP11-383B16 chrX 127Mb AZ254492 SP6,
AQ550758 SP6,
AQ550761 T7,
AZ254491 T7
  DXS7359
Xq26.1a~26.1b RP11-348J1 chrX 128Mb AZ254460 T7+,
AZ254461 SP6+
  DXS7865
Xq26.2a RP11-486A7 chrX 130Mb AZ303223 T7,
AZ303224 SP6
  DXS7278,
sWXD1781+
Xq26.2a~26.2b RP11-508C21 chrX 130Mb AZ303214 SP6,
AZ303213 T7
  DXS7278,
RH63767+,
sWXD1781+
Xq26.2b RP11-513O11 chrX 132Mb AZ303293 T7,
AZ303294 SP6
  RH16248
Xq26.3b RP11-357N12 chrX 133Mb AZ254466 T7+,
AQ553839 T7,
AZ519469 SP6
  DXS7503
Xq26.3d~27.1a RP11-503I20 chrX 136Mb AZ303212 SP6,
AZ303211 T7
  DXS7291
Xq27.2a RP11-533L19 chrX 140Mb AZ303296 SP6,
AZ303295 T7
  DXS8232
Xq27.3a RP11-356G18 chrX 141Mb AZ254464 T7+,
AZ254465 SP6+,
AQ535824 T7,
AQ535823 SP6
  DXS7409
Xq27.3b~27.3c RP11-513H18 chrX 142Mb AZ303298 SP6,
AZ303297 T7
  DXS7381
Xq27.3c RP11-503O6 chrX 144Mb AZ303216 SP6,
AZ303215 T7
  DXS7386
Xq27.3c~27.3d RP11-406D14 chrX 145Mb AZ254500 SP6+,
AZ254499 T7
  sWXD1447
Xq27.3d~27.3e RP11-489K19 chrX 146Mb AZ303209 T7,
AQ633285 T7,
AQ633283 SP6,
AZ303210 SP6
  DXS7378
Xq28b~28c RP11-337E5 chrX 150Mb AZ254452 T7+,
AZ254453 SP6+
  DXS7076
Xq28f RP11-405N23 chrX 154Mb AZ301102 T7,
AZ301103 SP6
  DXS7060+

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


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