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CCAP BAC Clones

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Chromosome 8


Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
8p23.2c RP11-11P7 chr8 2Mb B74941 T7,
B74940 SP6
AC019274 
8p23.1a RP11-235I5 chr8 11Mb AQ485960 T7,
AQ485959 SP6
AC090790 SHGC-33472
8p22c RP11-23H1 chr8 15Mb AQ013789,
AQ013787
AC020992 
8p22b RP11-468H14 chr8 16Mb AQ637600 SP6,
AQ637602 T7
AC079193 
8p22a RP11-89M16 chr8 17Mb AZ517262 T7,
AQ283418 T7,
AQ283415 SP6
AC015807* 
8p22a RP11-89M16 chr8 129Mb AQ283415 SP6*,
AQ283418 T7*,
AZ517262 T7*
AC015807 
8p21.3c~21.3b RP11-108E14 chr8 20Mb AQ318454 SP6,
AQ318633 T7
AC018541 
8p21.2b RP11-219J21 chr8 25Mb   AC009623 
8p21.2a RP11-138J2 chr8 27Mb AQ384966 SP6,
AQ349046 T7
AC010856 SHGC-35790
8p21.1c RP11-662B19 chr8 28Mb AQ496232 T7,
AQ434593 SP6
AC040975 
8p12c RP11-2I13 chr8 33Mb B48555 T7,
B48554 SP6
AC015779 
8p11.21c RP11-44K6 chr8 39Mb AQ202481,
AQ202482
AC007991 
8p11.21b RP11-125F4 chr8 41Mb AQ344016 T7,
CL423173 T7
AC090140+,
AC024027
 
8p11.1b RP11-726G23 chr8 43Mb   AC022616 
8q11.21a RP11-113H14 chr8 48Mb AQ343295 T7,
AQ343293 SP6
AC021236 
8q11.21c RP11-10H3 chr8 50Mb B71712 SP6,
B71713 T7
AC022568 
8q11.23a RP11-11C20 chr8 52Mb B73085 T7,
B73084 SP6
AC090186,
AF233070
 
8q11.23b RP11-26P22 chr8 54Mb B87018 T7,
B87017 SP6
AC016113 
8q11.23d RP11-767C6 chr8 55Mb AQ467082 T7,
AQ494949 SP6
AC044836 
8q12.1a RP11-16M8 chr8 57Mb B75513 T7,
B75512 SP6
AC012349 
8q12.1b RP11-114M5 chr8 59Mb AQ345497 SP6,
AQ345500 T7
AC009927 
8q12.1d RP11-91I20 chr8 61Mb AQ282589 T7,
AQ282586 SP6
AC068389 SHGC-12703
8q12.3a RP11-317H6 chr8 62Mb AQ535202 T7,
AQ535192 SP6
AC013543 
8q12.3c RP11-45K10 chr8 64Mb AQ201259 AC011124 
8q13.1a RP11-707M3 chr8 66Mb AQ408447 T7,
AQ438371 SP6
AC055822 
8q13.2a~13.2b RP11-343B22 chr8 68Mb AQ538958 T7,
AQ538955 SP6
AC022861 
8q13.2c RP11-131P18 chr8 70Mb   AC013746 
8q13.3c RP11-11K9 chr8 72Mb B71897 T7,
B71896 SP6
AC016465 
8q21.11b RP11-359N14 chr8 74Mb AQ541610 SP6 AC020670 
8q21.11d RP11-88N8 chr8 75Mb AQ281550 SP6,
AZ516872 T7,
AQ281551 T7
AC087532,
AF305874
 
8q21.13a RP11-48B3 chr8 81Mb AQ199304,
AQ199306
AC009812 
8q21.13c RP11-426C8 chr8 83Mb AQ528870 SP6+ AC022260 
8q21.13d RP11-97P19 chr8 84Mb AQ319565 SP6+,
AQ319566 T7
AC016879 
8q21.2b RP11-96G1 chr8 86Mb AQ317599 T7,
AQ317596 SP6
AC023390 
8q21.3c RP11-88J8 chr8 90Mb AZ516270 T7,
AQ280969 T7,
AQ280968 SP6
AC087270+,
AC102950+,
AC024026
 
8q21.3d RP11-27I15 chr8 93Mb B87098 T7,
B89423 SP6
AC016232 SHGC-5171,
SHGC-9208
8q22.1a RP11-30J11 chr8 95Mb B87826 T7,
B87825 SP6
AC020776 AA418077
8q22.1c RP11-22I13 chr8 97Mb B86256 SP6,
AQ008878 T7,
B86257 T7
AC013704 
8q22.1d RP11-662P7 chr8 98Mb AQ496302 T7,
AQ434670 SP6
AC023073 
8q22.2b RP11-10G10 chr8 101Mb B72815 T7,
B72814 SP6
AC013608 SHGC-12502,
SHGC-31092
8q22.3b RP11-118J17 chr8 102Mb AQ348517 SP6,
AQ348519 T7
AC011028 
8q23.1c RP11-79F7 chr8 107Mb AQ284146 T7,
AQ284144 SP6
AC091145+,
AF303733
 
8q23.1d RP11-22P7 chr8 109Mb AQ014311,
B84276 T7,
B84275 SP6
AC020991 
8q23.2a RP11-25D10 chr8 110Mb B83177 T7,
AQ013603,
AQ013605,
AQ003398 SP6
AC023245 
8q23.3c RP11-3A12 chr8 113Mb B48714 T7,
B48713 SP6
AC007719 
8q23.3e RP11-393K19 chr8 115Mb   AC025881 
8q24.11a RP11-30P9 chr8 118Mb B85274 T7,
B85273 SP6
AC024329 
8q24.12b RP11-534K13 chr8 121Mb   AC087751+,
AC020603
 
8q24.13a RP11-468O2 chr8 124Mb AQ631716 T7 AC018992 
8q24.21a RP11-65D17 chr8 127Mb AQ193999,
AQ237145 SP6
AC087667,
AF188028
AFM203XD10,
SHGC-1929
8q24.22b RP11-71N3 chr8 133Mb AQ237087 T7,
AQ268633 SP6
AC123780+,
AC011200,
AC090262
 
8q24.23b RP11-489O18 chr8 139Mb AQ633886 T7,
AQ633884 SP6
AC079015 
8q24.23c RP11-374B17 chr8 139Mb   AC068476 
8q24.3d RP11-953B20 chr8 142Mb AQ700743 SP6,
AQ571424 T7
AC104417 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.


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