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CCAP BAC Clones

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Chromosome 2

Map Coordinate BAC id Placement on genome1 Placement summary3 BAC End2 Insert Sequence2 STS id2
2p25.3c~25.3b RP11-163G21 chr2 2Mb AQ377808 T7,
AQ377806 SP6 		AC011995 
2p25.2c RP11-146M24 chr2 4Mb AQ373226 SP6,
AQ373229 T7 		AC022311 AFM224XB10+,
AFM224XB10
2p25.2b~25.2a RP11-439M11 chr2 6Mb CL423032 T7,
CL423029 SP6 		AC017076 SHGC-31892
2p25.1g~25.1f RP11-102G5 chr2 8Mb AQ323264 SP6,
AQ323267 T7 		AC009020 AFM298XB9+,
AFM298XB9
2p25.1a RP11-50E1 chr2 11Mb AQ052195 AC011994 
2p24.3d RP11-766E1 chr2 13Mb AQ462943 T7,
AQ519858 SP6 		AC093912 
2p24.3a RP11-247H16 chr2 15Mb CL423064 T7,
CL423061 SP6 		AC008274 AFM242XF10
2p24.2a RP11-111J6 chr2 18Mb AQ319817 SP6,
AQ342040 T7 		AC079148 AFMA070WE9+
2p24.2a~24.1d RP11-1007E2 chr2 16Mb AQ727016 T7,
AQ821706 SP6 		AC080094 
2p24.1b RP11-310O5 chr2 20Mb BZ629997 T7,
BZ629998 SP6 		AC023124 RH47965
2p24.1a RP11-469L8 chr2 23Mb AQ630350 SP6,
AQ630353 T7 		AC079924 
2p23.3d RP11-733L22 chr2 25Mb CL423094 SP6,
CL423098 T7,
AQ455549 T7 		AC019144 
2p23.3a~23.2b RP11-45M3 chr2 27Mb AQ200186,
AQ200187 		AC009427 SHGC-35430
2p23.2a RP11-56A1 chr2 29Mb AQ082393 AC093756 
2p23.1a RP11-540E17 chr2 31Mb CL423132 T7,
CL423128 SP6 		AC010743 
2p22.3d RP11-355K7 chr2 33Mb AQ533416 T7,
AQ533415 SP6 		AC019195 
2p22.2b RP11-137A4 chr2 37Mb AQ347826 T7,
AQ380763 SP6 		AC079342 
2p22.2a RP11-230E20 chr2 37Mb CL423021 SP6,
CL423026 T7 		AC010878 AFM267ZC9
2p22.1c RP11-454P5 chr2 39Mb AQ584943 T7 AC007253 
2p22.1b~22.1a RP11-24K2 chr2 41Mb AQ014008,
B84455 SP6 		AC009223 
2p21f RP11-379A23 chr2 42Mb AQ553455 T7+,
CL423133 SP6,
CL423134 T7 		AC096668 RH56279
2p21b RP11-119J12 chr2 45Mb AQ341762 T7,
AQ341761 SP6 		AC092600 AFMB318XA9
2p16.3d RP11-319N5 chr2 50Mb AZ521354 T7,
AQ537437 SP6 		AC068715 
2p16.3a RP11-18O19 chr2 51Mb B88146 SP6,
B88147 T7 		AC097463 
2p16.2a RP11-355A23 chr2 53Mb CL423164 T7,
CL423159 SP6 		AC009490 
2p16.1d RP11-13I6 chr2 54Mb B82217 SP6,
B82218 T7,
B75127 T7 		AC011187 
2p16.1c RP11-482H16 chr2 56Mb CL423165 SP6,
CL423167 T7,
AQ631816 T7 		AC007744 SHGC-36792
2p16.1b~16.1a RP11-90D1 chr2 59Mb AQ283574 SP6,
AZ518387 T7,
AQ283577 T7 		AC007092 
2p14c RP11-359K10 chr2 64Mb AQ539354 T7,
AQ539352 SP6 		AC007386 
2p14b RP11-1D24 chr2 67Mb B49575 SP6,
AQ315977 T7 		AC016265,
AC019040		 
2p13.3a RP11-467P9 chr2 71Mb CL423031 T7,
CL423028 SP6,
AQ630430 SP6 		AC007881 RH68850
2p13.2a RP11-466M21 chr2 72Mb AQ583891 T7,
AQ583890 SP6 		AC012366 
2p13.1b~13.1a RP11-140K4 chr2 74Mb AQ386685 T7,
AQ386671 SP6 		AC005033 
2p12i~12h RP11-20F13 chr2 76Mb AQ008132 SP6,
B85631 T7 		AC096550 
2p12d RP11-89C12 chr2 81Mb AZ516992 T7,
AQ282674 T7,
AZ516978 SP6,
AQ282671 SP6 		AC013262 
2p12c RP11-270E5 chr2 83Mb AQ485269 T7,
AQ485257 SP6 		AC013719 
2p11.2b RP11-81F3 chr2 86Mb AQ281069 SP6,
AZ521554 SP6,
AQ281085 T7 		AC064848 AA443649,
SHGC-14271,
SHGC-34184
2q11.1c RP11-468G5 chr2 95Mb   AC009238 RH21215+
2q11.2a~11.2b RP11-67L23 chr2 96Mb CL423060 SP6,
CL423063 T7,
AQ202753 		AC079754 AFM052XB4+,
AFM052XB4
2q11.2c RP11-343F11 chr2 98Mb AQ538357 SP6+,
AQ538359 T7 		AC064860 
2q11.2d RP11-451C2 chr2 101Mb AQ583064 SP6 AC007165 
2q12.2a~12.2b RP11-89O10 chr2 105Mb AQ283563 T7,
AQ283560 SP6 		AC068273 
2q12.3a~12.3c RP11-464P18 chr2 106Mb BZ369671 T7,
AQ635957 T7,
BZ369651 SP6 		AC073105 RH56183
2q13a RP11-20N5 chr2 110Mb B83874 T7,
AQ008137 SP6 		AC020990 
2q13c~13d RP11-65I12 chr2 113Mb AQ241116 SP6,
AQ200816 		AC016683 SHGC-20032
2q14.1a RP11-412A2 chr2 115Mb CL423097 T7,
CL423093 SP6,
AQ553965 SP6 		AC068939 
2q14.1b RP11-150F12 chr2 116Mb AQ375540 SP6,
AQ375573 T7 		AC079762 
2q14.2a RP11-41C17 chr2 118Mb AQ029083 SP6,
CL423127 SP6,
CL423131 T7 		AC012444 
2q14.3a RP11-17O6 chr2 122Mb B81880 SP6,
B82831 T7 		AC016063 SHGC-3258
2q14.3c~14.3d RP11-11G20 chr2 125Mb B73134 T7,
B73133 SP6 		AC012143 
2q14.3d~14.3e RP11-505O20 chr2 126Mb   AC013474 RH10819
2q21.2a~21.2b RP11-159N20 chr2 133Mb AQ374128 T7,
AQ374125 SP6 		AC010974 
2q21.3b RP11-34L23 chr2 136Mb AQ045058 SP6,
AQ045060 T7 		AC011893 
2q22.1a RP11-451C14 chr2 138Mb AQ583094 T7 AC020601 
2q22.1b RP11-432O12 chr2 139Mb AQ551250 SP6,
AQ551251 T7 		AC023468 
2q22.1d~22.2a RP11-161A24 chr2 141Mb AQ378582 SP6,
AQ378584 T7 		AC079585 
2q23.3b RP11-62P16 chr2 150Mb CL423163 T7,
AQ196085 		AC016682 
2q23.3d~23.3e RP11-17G11 chr2 153Mb B82677 SP6,
B82678 T7 		AC012443 SHGC-36777
2q24.1a~24.1b RP11-44N6 chr2 154Mb AQ203153,
CL423020 SP6,
CL423025 T7,
AQ203154 		AC092589 
2q24.1e~24.2a RP11-39B6 chr2 158Mb AQ030034 T7,
AQ030031 SP6 		AC069146 
2q24.2c~24.2d RP11-357L2 chr2 160Mb AQ553109 T7,
AZ519413 SP6 		AC009961 
2q24.3d RP11-2I8 chr2 166Mb B63302 T7,
B63301 SP6,
B47789 SP6 		AC010127,
AC015777		 
2q24.3f RP11-11N16 chr2 168Mb B75650 SP6,
B75651 T7 		AC018932 
2q31.1d RP11-91L3 chr2 171Mb AQ283582 SP6,
AQ284139 T7 		AC007739 
2q31.1e~31.1g RP11-22F10 chr2 173Mb B86189 T7+,
B86188 SP6,
AQ008753 T7 		AC016789 
2q31.1i RP11-12N7 chr2 175Mb B75064 T7,
B75063 SP6 		AC096649 AFMB049YD1
2q31.2a RP11-25L17 chr2 177Mb AQ013642,
B83265 T7,
B89487 SP6 		AC096657 
2q31.2c RP11-267A18 chr2 179Mb CL423053 SP6,
CL423058 T7 		AC093792 
2q31.3a RP11-69G4 chr2 182Mb AQ237262 T7,
AQ237260 SP6 		AC078936 AFM303YA9+,
AFM303YA9
2q31.3b RP11-169P13 chr2 180Mb AQ416546 SP6 AC021823 RH56795,
SHGC-33600
2q32.1c RP11-2F5 chr2 184Mb B63284 T7,
AQ283433 SP6 		AC096646 
2q32.1e~32.1f RP11-44L5 chr2 187Mb AQ199087,
AQ199088 		AC015585 SHGC-35719+
2q32.2a RP11-440F11 chr2 134Mb   AC019282 
2q32.3a RP11-192M8 chr2 191Mb CL423090 T7+,
AQ417267 SP6,
CL423085 SP6 		AC092614 SHGC-36003
2q32.3c RP11-305O20 chr2 194Mb   AC074290 
2q32.3e RP11-745H15 chr2 197Mb CL423030 T7,
CL423027 SP6 		AC073905 
2q33.1b RP11-3D3 chr2 197Mb B63352 T7,
AQ316784 SP6 		AC105249 
2q33.1c~33.1d RP11-2N19 chr2 200Mb B63688 T7,
B48663 T7,
B63687 SP6,
B48662 SP6 		AC011148 
2q33.1e~33.1f RP11-53H10 chr2 202Mb AQ053000 AC007358 
2q33.2a RP11-175H4 chr2 204Mb CL423059 SP6,
CL423062 T7 		AC010138 AFM074XG9,
SHGC-3548+
2q33.3a~33.3b RP11-150F11 chr2 206Mb AQ378799 T7,
AQ378797 SP6 		AC007362 
2q33.3d RP11-17I6 chr2 207Mb B82729 T7,
B81834 SP6 		AC009298 
2q34c~34d RP11-559J5 chr2 210Mb   AC006385 RH56222
2q34f RP11-45I18 chr2 214Mb AQ201229,
AQ201230 		AC009290 
2q35b RP11-566E18 chr2 216Mb CL423092 SP6,
CL423096 T7 		AC012513 AFMA082XC5
2q35d RP11-24P20 chr2 217Mb B86763 SP6,
AQ013953 		AC022195 AFM205YB4
2q35g RP11-316O14 chr2 219Mb AQ540398 T7 AC053503 RH74934,
SHGC-32022
2q36.1a RP11-444B5 chr2 221Mb CL423130 T7,
CL423126 SP6 		AC093843 
2q36.1b RP11-71J24 chr2 222Mb AQ266247 SP6 AC009302 
2q36.1d~36.2a RP11-183N7 chr2 224Mb AQ419063 T7,
AQ419061 SP6 		AC016701 AFMA337ZD1
2q36.3a RP11-59F3 chr2 225Mb CL423162 T7,
AQ202535 		AC067961 
2q36.3e RP11-457P23 chr2 230Mb AQ586779 T7,
AQ586776 SP6 		AC009973 
2q37.1a RP11-562I5 chr2 231Mb CC060009 SP6,
CC060008 T7 		AC017104 RH11536
2q37.1b~37.1c RP11-91N19 chr2 232Mb AZ519352 T7,
AQ284234 T7,
AQ284232 SP6 		AC012033 
2q37.1d RP11-94I20 chr2 234Mb AQ314878 SP6,
AQ314881 T7 		AC027778 
2q37.2b RP11-201F21 chr2 236Mb CL423019 SP6,
CL423024 T7 		AC019068 AFM276ZF5
2q37.3a RP11-526L8 chr2 238Mb CL423052 SP6,
CL423057 T7,
BZ758475 T7 		AC016757 RH10901
2q37.3d RP11-463B12 chr2 240Mb AQ585475 T7 AC013469 

1 FISH-mapped clone was placed on the sequenced genome based on BAC-ends, insert sequences and STSs.

2 Sequences that are associated with the clone and used for clone placement.
   * indicates sequences that disagree with data in 'Placement on genome' column.
   + indicates sequences that didn't align to the genome or were not used for annotation.

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

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