ElimDupes

Duplicate Sequence Removal

Purpose: compare the sequences in an alignment and identify or eliminate duplicates or very similar sequences.

For details, see ElimDupes Explanation.

Input

Paste your sequences here [Sample Input]
or upload your file
Yes, sequences are aligned	UNCHECK box if your sequences aren't aligned (tool will be much slower)
Analyze input by groups	enter number of leading digits

Elimination options

Eliminate sequences	100% identical more similar than %
Remove extraneous characters	(If seqs are unaligned, this setting may be changed by the tool; check your results.)
Make all letters uppercase
Consider subsequences as duplicates

Output options

Restore original sequences in output	Yes No
Create file of unique sequences with _count added to sequence names	Yes No  Include rank in sequence names  Sequence names end in '_nn' where nn is the occurrance count