M. E. Wall, Ed., Quantitative Biology: From Molecular to Cellular Systems. Boca Raton: Chapman & Hall, 2012. (URL)
K. M. Verspoor, J. D. Cohn, K. E. Ravikumar, M. E. Wall. 2012. Text mining improves prediction of protein functional sites. PLoS One 7:e32171. (URL)
M. E. Wall, S. Raghavan, J. D. Cohn, J. Dunbar. 2011. Genome majority vote improves gene predictions. PLoS Computational Biology 7:e1002284. (URL)
M. E. Wall, D. A. Markowitz, J. L. Rosner, R. G. Martin. 2009. Model of transcriptional activation by MarA in Escherichia coli. PLoS Computational Biology 5:e1000614. (PubMed; URL)
D. Ming, M. E. Wall. 2006. Interactions in native binding sites cause a large change in protein dynamics. J Mol Biol 358:213-223. (PubMed). Reprint (pdf). Preprint (pdf).
D. Ming, M. E. Wall. 2005. Allostery in a coarse-grained model of protein dynamics. Phys Rev Lett 95:198301. (PubMed; URL). Preprint (pdf). arXiv (q-bio.BM/0506031).
M.E. Wall, W.S. Hlavacek, M.A. Savageau. 2004. Design of gene circuits: lessons from bacteria. Nat Rev Genet 5:34-42. (PubMed; pdf); Online table (pdf); EcoTFs web site (URL).
M.E. Wall, S.H. Francis, J.D. Corbin, K. Grimes, R. Richie-Jannetta, J. Kotera, B.A. Macdonald, R.R. Gibson, J. Trewhella. 2003. Mechanisms associated with cGMP binding and activation of cGMP-dependent protein kinase. Proc Natl Acad Sci USA 100:2380-2385. (PubMed)
M.E. Wall, S.E. Ealick and S.M. Gruner. 1997. Three-dimensional diffuse X-ray scattering from crystals of Staphylococcal nuclease. Proc Natl Acad Sci USA 94:6180-6184. (PubMed)
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