External Resources
No endorsement is made or implied by inclusion here.
Tools
- Agile Molecule: Software for molecular modeling
- BioCatalog: software directory of general interest in molecular biology and genetics
- Bioinformatics, Databases and Software for Medicine
- Bioinformatics.org: The Open Lab: provides information on free tools being developed for bioinformatics research.
- Bioinformatik: software, tutorials, databases, literature, technologies, jobs, and resources.
- Biomedical Acronym Resolver: Identifies acronyms/abbreviations and their definitions within MEDLINE records.
- BioNetbook: directory of Web pages for Biology
- BioToolKit: an annotated directory of key molecular biology research tools.
- Bio-Web: Resources for Molecular and Cell Biologists: life sciences news, sequence analysis tools, journals and publishers, research institutions, software, and bio-links
- BLAST: NCBI's sequence similarity search tool supports analysis of nucleotide and protein databases.
- BRITE: database of binary relations for computation and graph comparisons
- Computational Biochemistry Research Group
- Computational Biosciences: protein and DNA sequence analysis and annotation
- Computational Molecular Biology
- DbBrowser at University of Manchester Bioinformatics Education and Research: accesses protein sequence and structure databases
- dbEST: Expressed Sequence Tags from a number of organisms.
- GenePath: web-enabled intelligent assistant for genetic data analysis and discovery of genetic networks
- Genetic Linkage Analysis
- Genetics from Google
- Genome Channel: Genome annotation and analysis
- Genome Sciences Department: Lawrence Berkeley National Laboratory
- GLIMMER: a system for finding genes in microbial DNA
- GRAIL: Gene Recognition and Assembly Internet Link: sequencing analysis
- HyperCLDB: cell culture availability in Italian and European laboratories
- IMAGE Consortium: Integrated Molecular Analysis of Genomes and their Expression
- Internet for the Molecular Biologist
- Iubio Archive: biology data and software
- KEGG: Kyoto Encyclopedia of Genes and Genomes
- Linux Online - Category: Scientific / biology
- Making PCR: an interactive site devoted to conversation and debate about the past, present, and future of PCR technology.
- Malaysian Genomics Resource Centre
- Microbiology Jump Station: collection of links for microbiologists
- MIDI Labs: Microbial Identification
- Molecular Biological Server: computer systems, databases and programs for molecular biology
- Molecular Biology Gateway
- Molecular Biology Jump Station: collection of links for biologists
- Molecular Genetics Jump Station: collection of links for genetics
- NCBI Education: tutorials for NCBI's bioinformatics tools
- Nucleic Acid Database (NDB) Project: goal is to assemble and distribute structural information about nucleic acids
- PBIL: allows browsing through numerous databases and access to many tools for nucleotide or protein sequence analysis
- PCR Jump Station: (Polymerase Chain Reaction)
- PDBSum: Summaries and Structural analysis of PDB data files
- PEDANT: Protein Extraction, Description, and ANalysis Tool
- Pfam - Protein families database of alignments and HMMs: protein families database of alignments and HMMs
- PRINTS A compendium of protein fingerprints
- ProtoNet: offers automatic hierarchical classification of proteins
- Reactome; a knowledge base of biological processes
- SAMBA: Systolic Accelerator for Molecular Biological Applications
- SDSC Biology Workbench
- SearchLauncher: provides a single point of entry for related WWW search and analysis services
- Secondary structure assignment database (DSSP) program: for DSSP database
- Seq-Gen: Sequence-Generator: application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
- SignalP: predicts signal peptides cleavage sites in amino acid sequences
- SWISS-MODEL: Automated Comparative Protein Modelling Server
- TESS: Transcription Element Search System
- VISTA: programs and databases for comparative analysis of genomic sequences from Lawrence Berkeley National Laboratory
- Visual Molecular Dynamics: molecular visualization program for displaying and animating large biomolecular systems using 3-D graphics
- Web Guide of Polymerase Chain Reaction Technique: Selected and Organized Links About PCR® Technique
- WWW Virtual Library: Biosciences: searchable index
Links Updated 07-Aug-09
Microarray category has been moved.
Resources
- 123Genomics: Genomics, Proteomics and Bioinformatics Knowledge Base
- 2can Bioinformatics Educational Resource
- Addgene Plasmid Repository for Life Sciences: non-profit organization promoting sharing of plasmid constructs
- All DNA Info DNA Directory: Directory of DNA information, source, companies, products and services
- American Type Culture Collection (ATCC): a global bioscience organization that provides biological products, technical services, and educational programs to private industry, government, and academic organizations around the world
- Bibliography on Computational Gene Recognition
- Bioinformatic resources, University of Otago, Dunedin, New Zealand: includes Transterm (tools for translational control elements) and Mlogd (detects overlapping genes)
- Bioinformatics Perl Script Library
- Bioinformatics, Databases and Software for Medicine
- BioMolecular Engineering Research Center and Molecular Biology Computer Research Resource
- BIOSCI/Bionet Newsgroup Archives: science and technology newsgroups in the biological sciences.
- BIOSCI/Bionet Newsgroups: BIOSCI is a set of electronic communication forums - the bionet USENET newsgroups and parallel e-mail lists - used by biological scientists worldwide.
- BioToolKit: an annotated directory of key molecular biology research tools.
- Bio-Web: Resources for Molecular and Cell Biologists: life sciences news, sequence analysis tools, journals and publishers, research institutions, software, and bio-links
- Biozon: a unified biological resource on DNA sequences, proteins, complexes and cellular pathways.
- Books with Genomics Protocols
- Broad Institute: fulfulling the promise of genetics for medicine
- Carolina Biologicals
- Cell Signaling Technology: interactive pathway images
- Center for Biology on the Web: link directory
- Common Access to Biological Resources and Information (CABRI)
- Commonwealth Biotechnologies, Inc.: customized project design and management
- Computational Biochemistry Research Group
- Computational Biosciences: protein and DNA sequence analysis and annotation
- Computational Genetics Laboratory, Dartmouth College: open-source software for genetics
- Computing Services list from Rockefeller University
- CyberFiber Newsgroups: check the Health, Support, and Recovery and the Science and Technology areas.
- Dalton Chemical Laboratories, Inc.
- EBI Macromolecular Structure Database: European project for the collection, management and distribution of data about macromolecular structures, derived in part from the Protein Data Bank (PDB).
- EMBL Nucleotide Sequence Database: Europe's primary DNA and RNA sequence resource.
- Entrez Nucleotides (GenBank): Nucleotide sequences from several sources.
- EPAs Science Inventory: Agency-wide catalog of science activities
- European Bioinformatics Institute (EBI): European Molecular Biology Laboratory (EMBL) research center that manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures.
- Functional Genomics Jump Station
- Fungal Genetics Stock Center
- GenBank -- National Center for Biotechnology Information
- Generation: Microbial Gene Prediction System
- Genetics from Google
- Genome Analysis Pipeline: submit sequences via web interface for comprehensive analysis
- Genomics Research and Bioinformatics
- Genomics:GTL Program from the U.S. Department of Energy: The next step at the Department of Energy to accelerate understanding of dynamic living systems
- GrailEXP: Grail Experimental Gene Discovery Suite: software package that predicts exons, genes, promoters, polyas, CpG islands, EST similarities, and repetitive elements within DNA sequence
- HyperCLDB: cell culture availability in Italian and European laboratories
- Internet Resources from Southwest Biotechnology and Informatics Center
- Library of Congress
- Linux Online - Category: Scientific / biology
- Macromolecule structures: requires Chime plugin to browser
- MicrobiologyProcedure.com: microbiology related reference resources
- MIT Knowledge Updates: educational briefings on life science topics
- Molecular Biology Directory
- National Genetics Reference Laboratories: Supporting the UK Genetic service Network
- Nature Technology Corporation: providing vector development and manufacturing assistance
- O'Reilly Science Center: books
- PCR Jump Station: (Polymerase Chain Reaction)
- PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit)
- Real Time PCR Primer Sets: Database of validated primer sets for quantitative real time PCR
- RIKEN Bioresource Center DNA Bank: cultured animal and plant cell lines, DNA from Tsukuba, Japan
- Virtual Library Genetics: a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
- Web Guide of Polymerase Chain Reaction Technique: Selected and Organized Links About PCR® Technique
Links Updated 07-Aug-09
