External Resources
No endorsement is made or implied by inclusion here.
Protein Research
- Addgene Plasmid Repository for Life Sciences: non-profit organization promoting sharing of plasmid constructs
- Biozon: a unified biological resource on DNA sequences, proteins, complexes and cellular pathways.
- Bloomsbury Centre for Structure Biology
- BRITE: database of binary relations for computation and graph comparisons
- BSM SearchLauncher: Protein secondary structure prediction
- Cambridge Crystallographic Data Center
- CATH: Protein Structure Classification
- Comparative and Functional Genomics
- Computational Biosciences: protein and DNA sequence analysis and annotation
- Computational Molecular Biology At NIH
- Cytokines Online Pathfinder Encyclopaedia (COPE)
- DbBrowser at University of Manchester Bioinformatics Education and Research: accesses protein sequence and structure databases
- DBSubLoc: database of protein subcellular localization
- EBI Macromolecular Structure Database: European project for the collection, management and distribution of data about macromolecular structures, derived in part from the Protein Data Bank (PDB).
- European Bioinformatics Institute (EBI): European Molecular Biology Laboratory (EMBL) research center that manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures.
- ExPASy - Swiss-Prot and TrEMBL: protein sequence database and the computer-annotated supplement
- ExPASy Molecular Biology Server (SWISS-PROT, etc.): EBI server dedicated to the analysis of protein sequences and structure as well as 2-D PAGE
- Folding@home: distributed computing project which studies protein folding, misfolding, aggregation, and related diseases
- Functional Genomics Jump Station
- Genomics:GTL Program from the U.S. Department of Energy: The next step at the Department of Energy to accelerate understanding of dynamic living systems
- IMB Jena Image Library of Biological Macromolecules
- iProClass: family relationships and structural/functional features of proteins
- MetaCyc: Metabolic Pathway Database: describes metabolic pathways, reactions, enzymes, and substrate compounds from multiple organisms
- Microbial Ecology, Proteogenomics & Computational Optima: DOE Genomes to Life Center at Harvard/MIT/BWH/MGH
- Microbial Protein-Protein Interactions (MiPPI): Genomics:GTL Center for Molecular and Cellular Systems
- Molecular Station: Molecular biology protocols, bioinformatics
- NNPREDICT server: Prediction of protein sequence secondary structure
- Nucleic Acid Database (NDB) Project: goal is to assemble and distribute structural information about nucleic acids
- PDBSum: Summaries and Structural analysis of PDB data files
- PEDANT: Protein Extraction, Description, and ANalysis Tool
- Peptaibol Database: Crystallography Department, Birkbeck College, London
- Pfam - Protein families database of alignments and HMMs: protein families database of alignments and HMMs
- PRINTS A compendium of protein fingerprints
- probeBase: database of published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information
- PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit)
- Protein Data Bank (PDB): Repository for 3-D macromolecular structure data
- Protein Science: a publication of the Protein Society
- Protein Structure Group, Computational Biosciences: exploring protein threading, ab initio folding, and classification
- Protein Structure Initiative: Better Tools and Better Knowledge for Structural Genomics
- Proteomics Standards Initiative: Aims to define community standards for data representation in proteomics to facilitate data comparison, exchange, and verification.
- ProtoNet: offers automatic hierarchical classification of proteins
- proWeb Project: protein family documentation
- REBASE[R]: Restriction Enzyme Database: information about restriction enzymes and related proteins
- SBASE: A Protein Domain Library
- SearchLauncher: provides a single point of entry for related WWW search and analysis services
- Secondary structure assignment database (DSSP) program: for DSSP database
- SignalP: predicts signal peptides cleavage sites in amino acid sequences
- SRPDB (Signal Recognition Particle Database)
- Structural Classification of Proteins: database of structural and evolutionary relationships among proteins
- Swiss Proteomics Society: Organization to promote research and education in the science of proteomics in Switzerland and other countries.
- SWISS-MODEL: Automated Comparative Protein Modelling Server
- Swiss-Prot: Annotated database of protein amino acid sequences.
- Systems Biology : Pacific Northwest National Laboratory (PNNL)
- The Molecules of Life: Simple interactive introduction to laboratory techniques used to understand the structure of protein molecules. For general audiences.
- The Proteome Society: Organization to provide worldwide opportunities regarding protein study for education, networking, and information exchange among scientists.
- Transcription Regulatory Regions Database
- Translational Proteomics: ProteomicsSURF: disease proteomics and proteomic technologies
- UCLA-DOE Institute for Genomics and Proteomics
- UniProt (Universal Protein Resource): comprehensive catalog of information on proteins
Links Updated 07-Aug-09
