This page lists reviews from both:
HIV
Sequence Compendium (in red)
HIV Molecular
Immunology Compendium (in green)
Link to: How to cite these review articles
-2008- |
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Identification and Optimal Definition of HIV-Derived Cytotoxic T-Lymphocyte (CTL) Epitopes for the Study of CTL Escape, Functional Avidity and Viral Evolution Nicole Frahm, Brett Baker, and Christian Brander |
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-2006/2007- |
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Sequence Alignment in HIV Computational Analysis Ana Abecasis, Anne-Mieke Vandamme, Philippe Lemey |
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The Epidemiology of Transmission of Drug Resistant HIV-1 David A.M.C. van de Vijver, Annemarie M.J. Wensing, Charles A.B. Boucher |
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Search Tools in the HIV Databases Jennifer Macke, Charles Calef, Karina Yusim, Robert Funkhouser, Thomas Leitner, James Szinger, Brian Gaschen, Werner Abfalterer, John Mokili, Brian Foley, Bette Korber, Carla Kuiken |
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Mutations in Retroviral Genes Associated with Drug Resistance Shauna A. Clark, Charles Calef, John W. Mellors |
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Identification of HIV-Derived, HLA Class I Restricted CTL Epitopes: Insights into TCR Repertoire, CTL Escape and Viral Fitness
Nicole Frahm, Caitlyn Linde, and Christian Brander |
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Beyond Mamu-A*01+ Indian Rhesus Macaques: Continued Discovery of New MHC Class I Molecules that Bind Epitopes from the Simian AIDS Viruses
John T. Loffredo, Laura E. Valentine, and David I. Watkins |
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-2005- |
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The Call of the Wild: What Can Be Learned
from Studies of SIV Infection of Natural Hosts? Shari Gordon, Ivona Pandrea, Richard Dunham, Cristian Apetrei, Guido Silvestri |
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Microbicides for the Prevention of HIV Infection Salim S. Abdool Karim |
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HIV-1 Subtype and Circulating Recombinant Form
(CRF) Reference Sequences, 2005 Thomas Leitner, Bette Korber, Marcus Daniels, Charles Calef, Brian Foley |
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Gateway to Tools of the
HIV and HCV Database Charles Calef, Carla Kuiken, James J. Szinger, Brian Gaschen, Werner Abfalterer, Ming Zhang, Ning Tao, Robert Funkhouser, Karina Yusim, Mark Flynn, Anita Dalwani, Brian Foley, William Bruno, Thomas Leitner and Bette Korber. |
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Mutations in Retroviral Genes
Associated with Drug Resistance Shauna A. Clark, Charles Calef, and John W. Mellors |
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Optimal CTL Epitope
Identification in HIV Clade B and Non-Clade B
Infection
Nicole Frahm and Christian Brander |
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Acute HIV Infection:
Implications for HIV Spread, Disease Progression, and Vaccine
Development
Myron S. Cohen, Jeffrey A. Anderson and Ronald Swanstrom |
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Gateway to Tools of the
HIV and HCV Database
Charles Calef, Carla Kuiken, James J. Szinger, Brian Gaschen, Werner Abfalterer, Ming Zhang, Ning Tao, Robert Funkhouser, Karina Yusim, Mark Flynn, Anita Dalwani, Brian Foley, William Bruno, Thomas Leitner and Bette Korber. |
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-2003- |
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Vif and the Role of Antiviral
Cytidine Deaminases in HIV-1 Replication Qin Yu, Nathaniel R. Landau and Renate König |
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Forms and Function of
Intracellular HIV DNA Andreas Meyerhans, Tanja Breinig, Jean-Pierre Vartanian, and Simon Wain-Hobson |
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The Microbial Forensic Use of
HIV Sequences Gerald H. Learn and James I. Mullins |
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Mutations in Retroviral Genes
Associated with Drug Resistance Urvi Parikh, Charles Calef, Shauna A. Clark, and John W. Mellors |
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Broad HIV-1 Specific CTL Responses
Reveal Extensive HLA Class I Binding Promiscuity of
HIV-Derived, Optimally Defined CTL Epitopes Nicole Frahm, Philip J.R. Goulder and Christian Brander. |
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Enhanced Motif Scan: A Tool to Scan
for HLA Anchor Residues in Proteins Karina Yusim, James J. Szinger, Isobella Honeyborne, Charles Calef, Philip J. R. Goulder, Bette T. M. Korber |
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Human Monoclonal Antibodies that
Neutralize HIV-1 Miroslaw K. Gorny and Susan Zolla-Pazner |
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-2002- |
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Overview of Primate Lentiviruses
and Their Evolution in Non-human Primates in
Africa Martine Peeters and Valerie Courgnaud |
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Biological and Molecular Aspects
of HIV-1 Coreceptor Usage Fransje A. Koning, Ronald P. van Rij, and Hanneke Schuitemaker |
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Mutational Analyses and Natural
Variability of the gp41 Ectodomain Rogier W. Sanders, Bette Korber, Min Lu, Ben Berkhout, and John P. Moore |
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Nucleocapsid Protein Chaperoning
of Nucleic Acids at the Heart of HIV Structure, Assembly and
cDNA Synthesis Jean-Luc Darlix, Marcelo Lopez Lastra, Yves Mely, and Bernard Roques |
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Visualizing Lentiviral Protein
3D Structures Brian Foley |
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Mutations in Retroviral Genes
Associated with Drug Resistance Urvi Parikh, Charles Calef, Brendan Larder, Raymond Schinazi, and John W. Mellors |
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Total Assessment of HIV-Specific
CTL Responses: Epitope Clustering, Processing Preferences,
and the Impact of HIV Sequence Heterogeneity Nicole Frahm, Christian Brander, and Philip J. R. Goulder |
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Web-based Tools for Vaccine
Design Ole Lund, Morten Nielsen, Can Kesmir, Jens K. Christensen, Claus Lundegaard, Peder Worning,and Soren Brunak |
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Mutational Analyses and Natural
Variability of the gp41 Ectodomain Rogier W. Sanders, Bette Korber, Min Lu, Ben Berkhout, and John P. Moore |
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-2001- |
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HIV-1 Gag: a Molecular Machine
Driving Viral Particle Assembly and Release Heinrich G. Göttlinger |
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Lentiviral LTR-directed
Expression, Sequence Variation, and Disease
Pathogenesis Fred C. Krebs, Tricia H. Hogan, Shane Quiterio, Suzanne Gartner, and Brian Wigdahl |
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Species and Tissue Tropisms of
HIV-1: Molecular Basis and Phenotypic
Consequences Bryan R. Cullen |
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A Guide to HIV-1 Reverse
Transcriptase and Protease Sequencing for Drug Resistance
Studies Robert W. Shafer, Kathryn Dupnik, Mark A. Winters, Susan H. Eshleman |
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HIV-1 Fitness: Implications for
Drug Resistance, Disease Progression, and Global Epidemic
Evolution Miguel E. Quiñones-Mateu and Eric J. Arts |
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Numbering Positions in SIV
Relative to SIVMM239 Charles Calef, John Mokili, David H. O'Connor, David I. Watkins, and Bette Korber |
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Reagents for HIV/SIV Vaccine
Studies Carla Kuiken |
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Mutations in Retroviral Genes
Associated with Drug Resistance Urvi Parikh, Charles Calef, Brendan Larder, Raymond Schinazi, and John W. Mellors |
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The Identification of Optimal
HIV-Derived CTL Epitopes in Diverse Populations Using HIV
Clade-Specific Consensus Christian Brander and Philip J. R. Goulder |
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ELF: An Analysis Tool for HIV-1
Peptides and HLA Types Charles Calef, Rama Thakallapally, Richard Kaslow, Mark Mulligan, Bette Korber |
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Where Have All The Monkeys
Gone?: Evaluating SIV-Specific CTL in the Post-Mamu-A*01
Era David H. O'Connor, Todd M. Allen, and David I. Watkins |
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A Review of the Role of the
Human Leukocyte Antigen (HLA) System as a Host Immunogenetic
Factor Influencing HIV Transmission and Progression to
AIDS Elizabeth A. Trachtenberg and Henry A. Erlich |
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-2000- |
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An overview of HIV-1 coreceptor
function and its inhibitors Emmanuel G. Cormier and Tatjana Dragic |
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An overview of the molecular
phylogeny of lentiviruses Brian T. Foley |
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Sequence homology search tools
on the World Wide Web Ian Holmes |
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Tat, a novel regulator of HIV
transcription and latency Jonathan Karn |
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Reagents for HIV/SIV Vaccine
Studies Rama Thakallapally, Carla Kuiken |
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Mutations in retroviral genes
associated with drug resistance Urvi Parikh, Jennifer Hammond, Charles Calef, Brendan Larder, Raymond Schinazi, and John W. Mellors |
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Recombinant HIV sequences: Their
role in the global epidemic Martine Peeters |
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Clinical trials of HIV
vaccines Barney S. Graham |
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The Evolving Field of HIV CTL
Epitope Mapping: New Approaches to the Identification of
Novel Epitopes Christian Brander and Philip J. R. Goulder |
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The Characterization of HIV-1
Specific CD4+ T Helper Epitopes Lisa A. Cosimi and Eric S. Rosenberg |
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PeptGen: Designing Peptides for
Immunological Studies and Application to HIV Consensus
Sequences Charles Calef, Rama Thakallapally, Dorothy Lang, Christian Brander, Philip Goulder, Otto Yang, Bette Korber |
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Motifscan: A Web-based Tool to
Find HLA Anchor Residues in Proteins or
Peptides Rama Thakallapally, Warren Kibbe, Dorothy Lang, Bette Korber |
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-1999- |
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A Structure-function analysis of
the Nef Protein of Primate Lentiviruses Vincent Piguet and Didier Trono |
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Diversity and Evolution of
Primate Lentiviruses Brigitte E. Beer, Elizabeth Bailes, Paul M. Sharp, and Vanessa M. Hirsch |
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Kaposi's Sarcoma and Kaposi's
Sarcoma-associated Herpesvirus/Human Herpesvirus 8: An
Overview Neil Renwick, Thomas Schulz and Jaap Goudsmit |
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HIV-1 Nomenclature
Proposal D. L. Robertson, J. P. Anderson, J. A. Bradac, J. K. Carr, B. Foley, R. K. Funkhouser, F. Gao, B. H. Hahn, C. Kuiken, G. H. Learn, T. Leitner, F. McCutchan, S. Osmanov, M. Peeters, D. Pieniazek, M. L. Kalish, M. Salminen, P. M. Sharp, S. Wolinsky, and B. Korber |
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Reagents for HIV/SIV Vaccine
Studies Rama Thakallapally, Patrick Rose, Sonia Vasil, Satish Pillai, and Carla Kuiken |
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Coreceptor Use by Primate
Lentiviruses Christopher C. Broder and Agnes Jones-Trower |
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Mutations in Retroviral Genes
Associated with Drug Resistance Jennifer Hammond, Charles Calef, Brendan Larder, Raymond Schinazi,and John W. Mellors |
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Recent Advances in HIV-1 CTL
Epitope Characterization Christian Brander and Philip J. R. Goulder |
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Neutralizing Epitopes of
HIV-1 Aran F. Labrjin and Paul W. H. I. Parren |
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Methods of Detection of
HIV-specific CTL and Their Role in Protection Against HIV
Infection Rupert Kaul and Sarah L. Rowland-Jones |
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SIV and SHIV CTL Epitopes
Identified in Macaques Todd M. Allen and David I. Watkins |
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-1998- |
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Structure of the core of the
HIV-1 gp120 Exterior Envelope Glycoprotein Richard Wyatt, Peter D. Kwong, Wayne A. Hendrickson, Joseph G. Sodroski |
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Reference Sequences Representing
the Principal Genetic Diversity of HIV-1 in the
Pandemic Jean K. Carr, Brian T. Foley, Thomas Leitner, Mika Salminen, Bette Korber, Francine McCutchan |
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Coreceptor Use by Primate
Lentiviruses Robert W. Doms, Aimee L. Edinger, John P. Moore |
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Sequence Quality
Control Carla Kuiken and Bette Korber |
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Numbering Positions in HIV
Relative to HXB2CG Bette Korber, Brian T. Foley, Carla Kuiken, Satish K. Pillai, Joseph G. Sodroski |
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Phylogenetic Analysis of gp41
Envelope of HIV-1 Groups M, N, and O Danuta Pieniazek, Chunfu Yang, Renu B. Lal |
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Reagents for HIV/SIV Vaccine
Studies Sonia Vasil, Rama Thakallapally, Satish Pillai, Carla Kuiken |
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SIV and SHIV CTL Epitopes
Identified in Macaques Todd M. Allen and David I. Watkins |
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Systematic Identification of
Optimal HIV-1 CTL Epitopes Christian Brander and Bruce D. Walker |
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MHC Tetramer Analyses of CD8+ T
Cell Responses to HIV and SIV John D. Altman and Jeffrey T. Safrit |
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-1997- |
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Updated Proposal of Reference
Sequences of HIV-1 Genetic Subtypes Thomas Leitner, Bette Korber, David Robertson, Feng Gao, Beatrice Hahn |
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HIV-1 Coreceptor Use: A
Molecular Window into Viral Tropism Robert W. Doms and John P. Moore |
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The History of HIV-1 Biological
Phenotypes Past, Present, and Future Eva Maria Fenyo, Hanneke Schuitemaker, Birgitta Asjo, Jane McKeating |
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Fine Structure of HIV and
SIV Hans R. Gelderblom |
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Reagents for HIV/SIV Vaccine
Studies Sonia Vasil, Rama Thakallapally, Satish Pillai, Carla Kuiken |
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gp41, A Multifunctional Protein
Involved in HIV Entry and Pathogenesis Eric Hunter |
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Intersubtype Recombinant HIV-1
Sequences David L. Robertson, Feng Gao, Beatrice H. Hahn |
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Drug Resistance Mutations
Superimposed on the Structures of HIV-1 Protease and Reverse
Transcriptase Holly Tao |
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Mutations in Retroviral Genes
Associated with Drug Resistance Jennifer Hammond, Brendan A. Larder, Raymond F. Schinazi and John W. Mellors |
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Systematic Identification of
Optimal HIV-1 CTL Epitopes Christian Brander and Bruce D. Walker |
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HIV-1 Specific Cytotoxic
T-Lymphocyte(CTL) responses in Pediatric
Infection Katherine Luzuriaga and John L. Sullivan |
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CTL responses of Rhesus Monkeys
to AIDS viruses: Epitopes and their restricting MHC Class-I
Alleles William A. Charini and Norman L. Letvin |
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-1996- |
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Antibody Cross-Competition
Analysis of the HIV-1 gp120 Envelope Glycoprotein and a
summary of Selected Competition groups John P. Moore and Joseph Sodroski |
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B-cell Epitopes on the Envelope
Glycoproteins of SIV and HIV-2 Karen A. Kent and Ewa Bjorling |
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Physico-chemical Analyses of the
Humoral Immune Response to HIV-1: Quantification of
Antibodies, Their Binding to Viral Antigens and
Neutralization of Viral Infectivity P. J. Klasse |
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A Comparison of HIV-1 Group M
and Group O Functional and Immunogenic Domains in the Gag
P24 Protein and the C2V3 Region of the Envelope
Protein Bette Korber, Ibtissam Loussert-Ajakai, John Blouin and Sentob Saragosti |
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HIV and Molecular
Mimicry Gerald Myers and Hong Lu |
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The HLA-class I Restricted CTL
Response in HIV-1 Infection: Systematic Identification of
Optimal Epitopes Christian Brander and Bruce D.Walker |
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-1995- |
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The HLA-class I Restricted CTL Response in HIV-1
Infection: Identification of Optimal Epitopes Christian Brander and Bruce D. Walker |
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Analysis of HLA Frequencies in Population Cohorts for
Design of HLA-Based HIV Vaccines Frances E Ward, Shiangtai Tuan, and Barton F. Haynes |
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Prediction of T-Cell Epitopes for HIV Vaccine
Development by Computer-Driven Algorithm Anne S. DeGroot, Bill M. Jesdale, Gabriel E. Meister, Neal I. Muni, and Caroline G. P. Roberts |
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