DOE Genome Contractor-Grantee Workshop IX January 27-31, 2002 Oakland, CA |
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Human Genome Project Information Genomes to Life Program Overview Sequencing Sequencing
Resources Instrumentation Functional
Analysis and Resources Bioinformatics Microbial
Cell Project Microbial
Genome Program Ethical,
Legal, and Social Issues Low
Dose Ionizing Radiation Infrastructure Abstracts from Previous Meetings
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Microbial Genome Program Abstract Index 132. Optical Map Based Sequence Validation of Microbes Marco Antoniotti, Thomas Anantharaman, Violet Chang, David Schwartz, and Bud Mishra 133. Interaction of Cytochrome c3 with Uranium Judy D. Wall and Barbara Rapp-Giles Alexander Beliaev, Dorothea K. Thompson, Carol S. Giometti, Kenneth H. Nealson, Alison E. Murray, James M. Tiedje, and Jizhong Zhou 135. Microarray Analysis of Sugar Metabolism Gene Networks in Thermotoga maritima Arvin D. Ejaz, Amy M. Mikula, Tu Nguyen, Ken Noll, Karen E. Nelson, and Steven R. Gill 136. Gene Expression Profiles in Nitrosomonas europaea, An Obligate Chemolithoautotroph Daniel Arp, Martin Klotz, and Jizhong Zhou Derek R. Lovley, Madellina Coppi, Stacy Cuifo, Susan Childers, Ching Lean Franz Kaufmann, Daneil Bond, Teena Mehta, and Mary Rothermich 138. Genome Sequencing of Gemmata obscuriglobus Naomi Ward, Margaret K. Butler, Rebecca L. Smith, and John A. Fuerst 139. Genome Sequence of Methanococcus maripaludis, a Genetically Tractable Methanogen Erik L. Hendrickson, Maynard Olson, Gary Olsen, and John A. Leigh 140. The Genome of Ferroplasma acidarmanus: Clues to Life in Acid Larry Croft, Amanda Barry, Paul Predki, Stephanie Stilwagen, Genevieve Johnson, Thomas M. Gihring, Brett J. Baker, Jennifer Macalady, George F. Mayhew, Valerie Burland, Teresa Janecki, Charles W. Kaspar, Brian Fox, and Jillian F. Banfield 141. Genome Sequence of the Metal-Reducing Bacterium, Shewanella oneidensis John F. Heidelberg, Ian T. Paulsen, Karen E. Nelson, William C. Nelson, Jonathan A. Eisen, Barbara Methe, Eric J. Gaidos, Owen White, Kenneth H. Nealson, and Claire M. Fraser 142. The Colwellia Strain 34H Genome Sequencing Project Barbara Methe, Matthew Lewis, Bruce Weaver, Jan Weidman, William Nelson, Adrienne Huston, Jody Deming, and Claire Fraser 143. Complete Genome Sequence of Acidithiobacillus ferrooxidans Strain ATCC23270 Herve Tettelin, Keita Geer, Jessica Vamathevan, Florenta Riggs, Joel Malek, Maureen Levins, Mobolanle Ayodeji, Sofiya Shatsman, Getahun Tsegaye, Stephanie McGann, Robert J. Dodson, Robert Blake, and Claire Fraser 144. The Complete Genome Sequence of the Green Sulfur Bacterium Chlorobium tepidum Jonathan A. Eisen, Karen E. Nelson, Ian T. Paulsen, John F. Heidelberg, Martin Wu, Robert J. Dodson, Robert Deboy, Michelle L. Gwinn, William C. Nelson, Daniel H. Haft, Erin K. Hickey, Jeremy D. Peterson, A. Scott Durkin, James L. Kolonay, Fan Yang, Ingeborg Holt, Lowell A. Umayam, Tanya Mason, Michael Brenner, Terrance P. Shea, Debbie Parksey, Tamara V. Feldblyum, Cheryl L. Hansen, M. Brook Craven, Diana Radune, Jessica Vamathevan, Hoda Khouri, Owen White, J. Craig Venter, Tanja M. Gruber, Karen A. Ketchum, Hervé Tettelin, Donald A. Bryant, and Claire M. Fraser 145. The Genome Sequences of Bacillus anthracis Strain Ames T. D. Read, E. Holtzapple, and S. Peterson 146. The Complete Genome Sequence of Pseudomonas putida KT 2440 Karen E. Nelson, Burkhard Tuemmler, and Claire M. Fraser 147. Genome Sequence of Methylococcus capsulatus Naomi Ward, Jonathan Eisen, Claire Fraser, George Dimitrov, Scott Durkin, Lingxia Jiang, Hoda Khouri, Katherine Lee, David Scanlan, Nils Kåre Birkeland, Live Bruseth, Ingvar Eidhammer, Svenn H. Grindhaug, Ingeborg Holt, Harald B. Jensen, Inge Jonasen, Øivind Larsen, and Johan Lillehaug S. Stilwagen, P. F. Predki, A. Bhattacharyya, H. Feil, W. S. Feil, F. Larimer, K. Frankel, S. Lucas, D. Rokhsar, E. Branscomb, and T. Hawkins P. Chain, W. Regala, L. Vergez, S. Stilwagen, F. Larimer, D. Arp, N. Hommes, A. Hooper, S. Chisholm, G. Rocap, B. Brahamsha, B. Palenik, and J. Lamerdin Yuri Y. Londer, P. Raj Pokkuluri, William C. Long, and Marianne Schiffer 151. Microbial Metal and Metalloid Metabolism and Beyond Lynda B. M. Ellis, Larry P. Wackett, Wenjun Kang, Bo Hou, and Tony Dodge 152. A Potential Thermobifida fusca Xyloglucan Degrading Operon Diana Irwin, Mark Cheng, Bosong Xiang, and David B. Wilson 153. Proteome Flux in Photosynthesis and Respiration Mutants of Synechocystis sp. PCC 6803 Julian P. Whitelegge, Kym F. Faull, Robby Roberson, and Wim Vermaas Ashlee M. Earl and John R. Battista 155. The Genome of a White Rot Fungus: How to Eat Dead Wood Nicholas Putnam, Jarrod Chapman, Susan Lucas, Luis Larrondo, Maarten Gelpke, Kevin Helfenbein, Jeff Boore, Randy Berka, Doug Hyatt, Frank Larimer, Dan Cullen, Paul Predki, Trevor Hawkins, and Dan Rokhsar 156. Metabolic Pathway Elucidation for Microbial Genomes Imran Shah, Ronald Taylor, and Shilpa Rao 157. Annotation of Shewanella oneidensis MR-1 from a Metabolic and Protein-Family View Monica Riley and Margrethe H. Serres 158. Modeling DNA repair in Deinococcus radiodurans Shwetal S. Patel and Jeremy S. Edwards 159. A Novel Combinatorial Biology Method to Functionally Characterize Microbial ORFs Diane J. Rodi and Lee Makowski 160. Annotation of Draft Microbial Genomes Frank W. Larimer, Loren Hauser, Miriam Land, Doug Hyatt, Manesh Shah, Philip LoCascio, Edward C. Uberbacher, and Inna Vokler 161. Annotation of Microbial Genomes Relevant to DOE’s Carbon Management and Sequestration Program F. Larimer, L. Hauser, M. Land, D. Hyatt, M. Shah, S. Stilwagen, P. Predki, D. Arp, A. Hooper, S. Chisholm, G. Rocap, B. Palenik, J. Waterbury, R. Atlas, J. Meeks, C. Harwood, R. Tabita, P. Chain, and J. Lamerdin 162. A Genome-Wide Search for Archaeal Promoter Elements Enhu Li, Aaron A. Best, Gretchen M. Colon, Claudia I. Reich, and Gary J. Olsen 163. New Markov Model Approaches to Deciphering Microbial Genome Function John M. Logsdon, Jr., Mark. A. Ragan, and Mark Borodovsky T. L. Marsh, S-H Kim, N. M. Isaacs, S. Eichorst, and K. Konstantinidis 165. Lateral Gene Transfer and the History of Bacterial Genomes Howard Ochman Michel Marharbiz, William Holtz, Roger Howe, and Jay D. Keasling 167. Optical Mapping: New Technologies and Applications David C. Schwartz, Shiguo Zhou, Ana Garic-Stankovic, Alex
Lim, Eileen Dimalanta, Arvind Ramanathan, Tian Wu, Ossmat Azzam, Casey Lamers,
Brian Lepore, Aaron Anderson, Michael Bechner, Erika Kvikstad, Natalie Kaech,
Andrew Kile, 168. Spectroscopic Studies of Desulfovibrio desulfuricans Cytochrome c3 William H. Woodruff, Judy D. Wall, Robert J. Donohoe, and Geoffrey B. West 169. Identification and Isolation of Active, Non-Cultured Bacteria for Genome Analysis Cheryl R. Kuske, Susan M. Barns, Ellie Redfield, and Leslie E. Sommerville 170. Assembly of Microbial Sub-Genomes from Beneath a Leaking High-Level Radioactive Waste Tank Fred Brockman, Margie Romine, Greg Newton, Amber Alford, Shu-mei Li, Jim Fredrickson, Kristen Kadner, Paul Richardson, and Paul Predki 171. The Marine Environment from a Cyanobacterial Perspective Brian Palenik, Ian Paulsen, Bianca Brahamsha, Rebecca Langlois, and John Waterbury 172. Metagenomic Analysis of Uncultured Cytophaga and Beta-1,4 Glycanases in Marine Consortia David L. Kirchman and Matthew T. Cottrell 173. Rational Design and Application of DNA Signatures P. Scott White, John Nolan, Rich Okinaka, Paul Jackson, and Paul Keim 174. Pathogen Detection: Successes and Limitations of TaqMan® PCR and Limitations of TaqMan® PCR Shea N. Gardner, Thomas A. Kuczmarski, Elizabeth A. Vitalis, and Tom Slezak J. A. Eisen, F. T. Robb, J. Gonzalez, T. Sokolova, L. J. Tallon, K. Jones, A. S. Durkin, and C. M. Fraser Carloine S. Harwood 207. Environmental Genomics and Microbial Ecology Edward F. DeLong 209. Microbial Defense Systems: Ecology, Evolution and Application Margaret (Peg) Riley 211. Gene Transfer: Past and Present Claudia I. Reich, Carl R. Woese, and Gary J. Olsen 212. Genomic Analysis of Geobacter Species Living in Pure Culture and in Subsurface Environments Derek R. Lovley George M. Garrity and Timothy G. Lilburn P. Chain, W. Regala, L. Vergez, S. Stilwagen, F. Larimer, D. Arp, N. Hommes, A Hooper, S. Chisholm, G. Rocap, B. Brahamsha, B. Palenik, and J. Lamerdin 219. Analyzing the Metagenome: Accessing the Uncultured Microbial World Jo Handelsman |
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