Profiling of the peripheral leukocyte transcriptome of dairy cattle reveals gene expression patterns associated with genetic potential for milk production
- (Abstract)
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(14-Jan-09) |
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Tolerant ethanologenic yeast for low-cost lignocellulosic biomass conversion to ethanol
- (Abstract)
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(28-Nov-08) |
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Conversion of Extracted Oil Cake Fibers into Bioethanol including DDGS, Canola, Sunflower, Seasame, Soy, and Peanut for Integrated Biodiesel Processing
- (Peer Reviewed Journal)
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Balan, V., Rogers, C.A., Chundawat, S.P., Sousa, L.D., Slininger, P.J., Gupta, R., Dale, B.E. 2008. Conversion of extracted oil cake fibers into bioethanol including DDGS, canola, sunflower, seasame, soy, and peanut for integrated biodiesel processing. Journal of the American Oil Chemists' Society. 86:157-165. |
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Mechanisms of tolerance and in situ detoxification of biomass conversion inhibitors by Saccharomyces cerevisiae
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(24-Oct-08) |
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Discrete dynamic system modeling for gene regulatory networks of HMF tolerance for ethanologenic yeast
- (Peer Reviewed Journal)
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(21-Oct-08) |
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Genomic mechanisms of inhibitor-detoxification for low-cost lignocellulosic bioethanol conversion
- (Abstract)
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Liu, Z., Moon, J., Mingzhou, S.J. 2008. Genomic mechanisms of inhibitor-detoxification for low-cost lignocellulosic bioethanol conversion [abstract]. Journal of Biotechnology 136S:S218. |
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Culture conditions supporting inhibitor tolerance and rapid production of ethanol by P. stipitis NRRL Y-7124
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(23-Sep-08) |
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Multiple gene mediated NAD(P)H-dependent aldehyde reduction is a mechanism of in situ detoxification of furfural and HMF by Saccharomyces cerevisiae
- (Peer Reviewed Journal)
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Liu, Z., Moon, J., Andersh, B.J., Slininger, P.J., Weber, S.A. 2008. Multiple gene mediated NAD(P)H-dependent aldehyde reduction is a mechanism of in situ detoxification of furfural and HMF by Saccharomyces cerevisiae. Applied Microbiology and Biotechnology. 81:743-753. |
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Change your conventional practice of qRT-PCR: A simple robust quality control standard for yeast mRNA quantification analysis
- (Abstract)
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Liu, Z. 2008. Change your conventional practice of qRT-PCR: A simple robust quality control standard for yeast mRNA quantification analysis [abstract]. 12th International Conference on Yeasts. p. 140. |
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Culture nutrition and physiology impact the inhibitor tolerance of the yeast Pichia stipitis NRRL Y-7124
- (Peer Reviewed Journal)
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Slininger, P.J., Gorsich, S.W., Liu, Z. 2009. Culture nutrition and physiology impact the inhibitor tolerance of the yeast Pichia stipitis NRRL Y-7124. Biotechnology and Bioengineering. 102(3):788-790. |
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Polysaccharide benefits dry storage survival of the biocontrol agent Pseudomonas fluorescens S11:P:12 effective against several maladies of stored potatoes
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Slininger, P.J., Dunlap, C.A., Schisler, D.A. 2008. Polysaccharide benefits dry storage survival of the biocontrol agent Pseudomonas fluorescens S11:P:12 effective against several maladies of stored potatoes [abstract]. Phytopathology 98(6):S147.
. American Phytopathological Society. |
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Colored and white sectors of petunia flowers display differential resistance to insect herbivores
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Johnson, E.T., Berhow, M.A., Dowd, P.F. 2008. Colored and white sectors of petunia flowers display differential resistance to insect herbivores [abstract]. Phytochemical Society of North America Proceedings. Abstract No. S9-3. p. 57. |
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Functional genomic studies lead in situ detoxification of fermentation inhibitors for low-cost cellulosic ethanol production
- (Abstract)
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(21-May-08) |
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Impact of inoculum production conditions on stress tolerance and fermentation efficiency of natural xylose-fermenting yeasts presented xylose and glucose
- (Abstract)
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Slininger, P.J., Liu, Z. 2008. Impact of inoculum production conditions on stress tolerance and fermentation efficiency of natural xylose-fermenting yeasts presented xylose and glucose [abstract]. Biotechnology for Fuels and Chemicals Symposium Proceedings. Abstract No. 5734 |
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Validation and standardization of gene expression data for microarray and real time quantitative PCR using universal external RNA controls
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Liu, Z. 2007. Validation and standardization of gene expression data for microarray and real time quantitative PCR using universal external RNA controls [abstract]. Cambridge Healthtech Institute Conference on Quantitative PCR, Microarrays, and Biological Validation. |
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Enhanced L-(+)-lactic acid production by an adapted strain of Rhizopus oryzae using corncob hydrolysate
- (Peer Reviewed Journal)
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Bai, D., Li, S., Liu, Z., Cui, Z. 2007. Enhanced L-(+)-lactic acid production by an adapted strain of Rhizopus oryzae using corncob hydrolysate. Applied Biochemistry and Biotechnology. 144:79-85. |
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Impact of culture nutrition on tolerance of furan inhibitors and the conversion of high xylose concentrations to ethanol by Pichia stipitis NRRL Y-7124
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Slininger, P.J. 2007. Impact of culture nutrition on tolerance of furan inhibitors and the conversion of high xylose concentrations to ethanol by Pichia stipitis NRRL Y-7124 [abstract]. Proceeding of the Chicago Section of the American Institute of Chemical Engineers. p. 26. |
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Absolute mRNA quantification of Pseudomonas fluorescens Pf-5 by qRT-PCR using universal RNA controls
- (Abstract)
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Liu, Z., Slininger, P.J. 2007. Absolute mRNA quantification of Pseudomonas fluorescens Pf-5 by qRT-PCR using universal RNA controls [abstract]. American Society for Microbiology. |
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Genomic engineering of Saccharomyces cerevisiae for biomass conversion to ethanol
- (Abstract)
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(03-Aug-07) |
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Multiple gene mediated aldehyde reduction is a mechanism of in situ detoxification of furfural and 5-hydroxymethylfurfural by Saccharomyces cerevisiae
- (Abstract)
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Liu, Z., Moon, J., Andersh, B.J., Slininger, P.J., Weber, S.A. 2007. Multiple gene mediated aldehyde reduction is a mechanism of in situ detoxification of furfural and 5-hydroxymethylfurfural by Saccharomyces cerevisiae [abstract]. Yeasts International Symposium. Abstract No. S-134. |
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A robust standard for absolute mRNA quantification of Saccharomyces cerevisiae by qRT-PCR using the universal RNA controls
- (Abstract)
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Liu, Z., Palmquist, D.E. 2007. A robust standard for absolute mRNA quantification of Saccharomyces cerevisiae by qRT-PCR using the universal RNA controls [abstract]. Yeasts International Symposium. Abstract No. S-84. |
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Lignocellulosic biomass conversion to ethanol by Saccharomyces
- (Book/Chapter)
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Liu, Z., Saha, B.C., Slininger, P.J. 2008. Lignocellulosic biomass conversion to ethanol by Saccharomyces. In: Wall, J., Harwood, C., Demain, A., editors. Bioenergy. Chapter 4. Washington, DC: ASM Press. p. 17-36. |
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Mechanisms of in situ detoxification of furfural and HMF by ethanologenic yeast Saccharomyces cerevisiae
- (Abstract)
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Liu, Z., Andersh, B.J., Slininger, P.J. 2007. Mechanisms of in situ detoxification of furfural and HMF by ethanologenic yeast Saccharomyces cerevisiae [abstract]. Biotechnology for Fuels and Chemicals Symposium Proceedings. Abstract No. 1B-28, p. 85. |
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Impact of culture nutrition on inhibitor tolerance and the conversion of high xylose concentrations to ethanol by Pichia stipitis NRRL Y-7124
- (Abstract)
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Slininger, P.J., Liu, Z., Gorsich, S.W. 2007. Impact of culture nutrition on inhibitor tolerance and the conversion of high xylose concentrations to ethanol by Pichia stipitis NRRL Y-7124 [abstract]. Biotechnology for Fuels and Chemicals Symposium Proceedings. p. 88. Paper No. 1B-38. |
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Enhanced L(+)-lactic acid production from corncob hydrolysate by an adapted strain of Rhizopus oryzae
- (Abstract)
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Bai, D., Li, S., Liu, Z., Cui, Z. 2007. Enhanced L(+)-lactic acid production from corncob hydrolysate by an adapted strain of Rhizopus oryzae [abstract]. Biotechnology for Fuels and Chemicals Symposium Proceedings. Abstract No. 1B-44, p. 90. |
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Biological control of post-harvest late blight of potatoes
- (Peer Reviewed Journal)
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Slininger, P.J., Schisler, D.A., Ericsson, L.D., Brandt, T., Frazier, M.J., Woodell, L., Olson, N., Kleinkopf, G. 2007. Biological control of post-harvest late blight of potatoes. Biocontrol Science and Technology. 17(5/6):647-663. |
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Gene expression profiling for genetic merit in dairy cattle
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Rabel, C., Everts-Vam Der Womd, A., Everts, R., Band, M.R., Wallace, R.L., Liu, Z., Rodriguez-Zas, S., Lewin, H.A. 2007. Gene expression profiling for genetic merit in dairy cattle [abstract]. Plant and Animal Genome VX Conference Abstracts. |
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A linear discrete dynamic system model for temporal gene interaction and regulatory network influence in response to bioethanol conversion inhibitor HMF for ethanologenic yeast
- (Abstract)
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(03-Dec-06) |
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Impact of culture nutrition on tolerance of furan inhibitors and the conversion of high xylose concentrations to ethanol by Pichia stipitis NRRL Y-7124
- (Abstract)
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Slininger, P.J., Liu, Z., Gorsich, S.W. 2006. Impact of culture nutrition on tolerance of furan inhibitors and the conversion of high xylose concentrations to ethanol by Pichia stipitis NRRL Y-7124 [abstract]. American Institute of Chemical Engineers Annual Meeting. Paper No. 531d. |
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A linear discrete dynamic system model for temporal gene interaction and regulatory network influence in response to bioethanol conversion inhibitor HMF for ethanologenic yeast
- (Peer Reviewed Journal)
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Song, M., Liu, Z. 2007. A linear discrete dynamic system model for temporal gene interaction and regulatory network influence in response to bioethanol conversion inhibitor HMF for ethanologenic yeast. Lecture Notes in Bioinformatics. 4532:77-95. |
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Universal external RNA controls for microbial gene expression analysis using microarray and qRT-PCR
- (Peer Reviewed Journal)
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Liu, Z., Slininger, P.J. 2007. Universal external RNA controls for microbial gene expression analysis using microarray and qRT-PCR. Journal of Microbiological Methods. 68:486-496. |
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Transcriptional regulatory analysis reveals PDR3 and GCR1 as regulators of significantly induced genes by 5-hydroxymethylfurfural stress involved in bioethanol conversion for ethanologenic yeast Saccharomyces cerevisiae
- (Abstract)
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Liu, Z., Sinha, S. 2007. Transcriptional regulatory analysis reveals PDR3 and GCR1 as regulators of significantly induced genes by 5-hydroxymethylfurfural stress involved in bioethanol conversion for ethanologenic yeast saccharomyces cerevisiae [abstract]. Microarray Gene Expression Data Society (MGED 9) Meeting. |
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The growth inhibitor, furfural, induces cellular stress signals in Saccharomyces cerevisiae
- (Abstract)
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Gorsich, S.W., Mccaffery, J.M. 2006. The growth inhibitor, furfural, induces cellular stress signals in Saccharomyces cerevisiae [abstract]. Yeast Genetics and Molecular Biology Meeting. Paper No. 99C. |
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Genomic adaptation of ethanologenic yeast to biomass conversion inhibitors
- (Review Article)
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Liu, Z. 2006. Genomic adaptation of ethanologenic yeast to biomass conversion inhibitors. Applied Microbiology and Biotechnology. 73(1):27-36. |
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IN SITU DETOXIFICATION OF FERMENTATION INHIBITORS BY STRESS TOLERANT ETHANOLOGENIC YEAST FOR LOW-COST BIOMASS CONVERSION TO ETHANOL
- (Abstract)
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Liu, Z., Slininger, P.J. 2006. In situ detoxification of fermentation inhibitors by stress tolerant ethanologenic yeast for low-cost biomass conversion to ethanol [abstract]. World Bio-Energy 2006 Proceedings. p. 121. |
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PROLINE-BASED MODULATION OF 2,4-DIACETYLPHLOROGLUCINOL AND VIABLE CELL YIELDS IN CULTURES OF PSEUDOMONAS FLUORESCENS WILD AND OVER-PRODUCING STRAINS
- (Abstract)
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Slininger, P.J., Shea Andersh, M.A. 2006. Proline-based modulation of 2,4-diacetylphloroglucinol and viable cell yields in cultures of Pseudomonas fluorescens wild and over-producing strains [abstract]. International Plant Growth Promoting Rhizobacteria Workshop. Paper No. P57. |
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THE FERMENTATION INHIBITOR FURFURAL CAUSES CELLULAR DAMAGE TO SACCHAROMYCES CEREVISIAE
- (Abstract)
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Gorsich, S.W., Slininger, P.J., McCaffery, J. 2006. The fermentation inhibitor furfural causes cellular damage to Saccharomyces cerevisiae [abstract]. Biotechnology for Fuels and Chemicals Symposium Proceedings. Paper No. 4-17. |
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NITROGEN SOURCE AND MINERAL OPTIMIZATION ENHANCE D-XYLOSE CONVERSION TO ETHANOL BY THE YEAST PICHIA STIPITIS NRRL Y-7124
- (Peer Reviewed Journal)
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Slininger, P.J., Dien, B.S., Gorsich, S.W., Liu, Z. 2006. Nitrogen source and mineral optimization enhance D-xylose conversion to ethanol by the yeast Pichia stipitis NRRL Y-7124. Applied Microbiology and Biotechnology. 72(6):1285-1296. |
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ENGINEERING STRESS-TOLERANT MICROBES FOR LOWER COST PRODUCTION OF BIOFUELS AND BIOPRODUCTS
- (Abstract)
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Slininger, P.J., Liu, Z., Gorsich, S.W. 2005. Engineering stress-tolerant microbes for lower cost production of biofuels and bioproducts [abstract]. American Institute of Chemical Engineers Annual Meeting. Paper No. 303a. |
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PROPOSED METHODS FOR TESTING AND SELECTING THE ERCC EXTERNAL RNA CONTROLS
- (Peer Reviewed Journal)
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Liu, Z., Members of ERCC. 2005. Proposed methods for testing and selecting the ERCC external RNA controls. Biomed Central (BMC) Genomics. 6:150. |
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NOVEL GENES THAT PROVIDE INCREASED STRESS TOLERANCE IN SACCHAROMYCES CEREVISIAE
- (Abstract)
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Gorsich, S.W. 2005. Novel genes that provide increased stress tolerance in Saccharomyces cerevisiae [abstract]. Southern Great Lakes Local Section of the Society for Industrial Microbiology. Paper No. 2. |
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THE EXTERNAL RNA CONTROLS CONSORTIUM: A PROGRESS REPORT
- (Peer Reviewed Journal)
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Liu, Z.L., External RNA Control Consortium. 2005. The external RNA controls consortium: A progress report. Nature Methods. 2(10):731-734. |
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UNIVERSAL EXTERNAL RNA QUALITY CONTROLS FOR MRNA EXPRESSION ANALYSIS USING MICROBIAL DNA OLIGO MICROARRAY AND REAL TIME QUANTITATIVE RT-PCR
- (Abstract)
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Liu, Z., Slininger, P.J. 2005. Universal external RNA quality controls for mRNA expression analysis using microbial DNA oligo microarray and real time quantitative RT-PCR [abstract]. Eighth International Meeting of the Microarray Gene Expression Data Society. Poster #P161, p. 45-46. |
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MINERAL AND NITROGEN SOURCE OPTIMIZATION ENHANCE D-XYLOSE CONVERSION TO ETHANOL BY THE YEAST PICHIA STIPITIS
- (Abstract)
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Slininger, P.J., Dien, B.S., Gorsich, S.W., Liu, Z. 2005. Mineral and nitrogen source optimization enhance d-xylose conversion to ethanol by the yeast Pichia stipitis [abstract]. Society of Industrial Microbiology Annual Meeting. Paper No. P07. |
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GENOMIC ADAPTIVE RESPONSE OF YEAST TO BIOFUEL FERMENTATION INHIBITORS
- (Abstract)
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Liu, Z. 2005. Genomic adaptive response of yeast to biofuel fermentation inhibitors [abstract]. Society of Industrial Microbiology Annual Meeting. Abstract No. S37. |
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PHYSIOLOGICAL RESPONSES TO FURFURAL AND HMF AND THE LINK TO OTHER STRESS PATHWAYS
- (Abstract)
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Gorsich, S.W., Slininger, P.J., Liu, Z. 2005. Physiological responses to furfural and HMF and the link to other stress pathways [abstract]. European Congress on Biotechnology. Paper No. G.4.4. |
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A 7872 CDNA MICROARRAY AND ITS USE IN BOVINE FUNCTIONAL GENOMICS
- (Peer Reviewed Journal)
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Everts, R.E., Band, M.R., Liu, Z., Kumar, C.G., Liu, L., Loor, J.J., Oliveria, R., Lewin, H.A. 2005. A 7872 cNDA microarray and its use in bovine functional genomics. Veterinary Immunology and Immunopathology. 105:235-245 |
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TOLERANCE TO FURFURAL-INDUCED STRESS IS ASSOCIATED WITH PENTOSE PHOSPHATE PATHWAY GENES ZWF1, GND1, RPE1,AND TKL1 IN SACCHAROMYCES CEREVISIAE
- (Peer Reviewed Journal)
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Gorsich, S.W., Dien, B.S., Nichols, N.N., Slininger, P.J., Liu, Z., Skory, C.D. 2005. Tolerance to furfural-induced stress is associated with pentose phosphate pathway genes ZWF1, GND1, RPEL, and TKL1 in Saccharomyces cerevisiae. Applied Microbiology and Biotechnology. 71(3):339-349. |
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A NEW DNA OLIGO MICROARRAY FOR COMPLETE GENOME OF PSEUDOMONAS FLUORESCENS PF-5
- (Abstract)
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Liu, Z., Duboy, R.T., Press, C., Loper, J.E., Paulsen, I.T., Slininger, P.J. 2005. A new DNA oligo microarray for complete genome of Pseudomonas fluorescens pf-5 [abstract]. International Union of Microbiological Societies. Abstract No. B-1258, p. 63-64. |
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STRESS TOLERANCE IN SACCHAROMYCES CEREVISIAE CELLS OVEREXPRESSING FURFURAL-STRESS GENES
- (Proceedings/Symposium)
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Gorsich, S.W. 2005. Stress tolerance in Saccharomyces cerevisiae cells overexpressing furfural-stress genes [abstract]. Gordon Research Conference Proceedings. Abstract No. 19. |
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BIOLOGICAL CONTROL OF POST HARVEST LATE BLIGHT OF POTATOES IN STORAGE BY BACTERIA SUPPRESSIVE TO FUNGAL DRY ROT AND SPROUTING
- (Abstract)
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Slininger, P.J., Schisler, D.A., Kleinkopf, G. 2005. Biological control of post harvest late blight of potatoes in storage by bacteria suppressive to fungal dry rot and sprouting. In: Potato Association of America Annual Meeting Proceedings, July 17-22, 2005, Calgary, Alberta, Canada. Paper No. G39. |
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BIOLOGICAL SOLUTIONS TO CROP PROTECTION: A SHIFT FROM THE CHEMICAL PARADIGM
- (Abstract)
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Slininger, P.J. 2005. Biological solutions to crop protection: A shift from the chemical paradigm. In: Kendra, D., Harper, R., editors. Corn Dry Milling Conference Proceedings. North American Millers Associaton, June 2-3, 2005, Peoria, IL. p. 12. |
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INDUCTION OF PLEIOTROPIC DRUG RESISTANCE GENE EXPRESSION INDICATES IMPORTANT ROLES OF PDR TO COPE WITH FURFURAL AND 5-HYDROXYMETHYLFURFURAL STRESS IN ETHANOLOGENIC YEAST
- (Abstract)
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Liu, Z., Slininger, P.J. 2005. Induction of pleiotropic drug resistance gene expression indicates important roles of pdr to cope with furfural and 5-hydroxymethylfurfural stress in ethanologenic yeast [abstract]. Biotechnology for Fuels and Chemicals Symposium Proceedings. Abstract No. 169. |
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THE ROLE OF THE PENTOSE PHOSPHATE PATHWAY IN FERMENTATION INHIBITOR TOLERANCE
- (Abstract)
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Gorsich, S.W., Liu, Z., Slininger, P.J. 2005. The role of the pentose phosphate pathway in fermentation inhibitor tolerance. Biotechnology for Fuels and Chemicals Symposium Proceedings. Abstract No. 5-33. |
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TRANSCRIPTOME DYNAMICS OF ETHANOLOGENIC YEAST IN RESPONSE TO 5-HYDROXYMETHYLFURFURAL STRESS RELATED TO BIOMASS CONVERSION TO ETHANOL
- (Proceedings/Symposium)
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Liu, Z., Slininger, P.J. 2005. Transcriptome dynamics of ethanologenic yeast in response to 5-hydroxymethylfurfural stress related to biomass conversion to ethanol [abstract]. Abstract Book. p. 991. |
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TRANSCRIPTOME DYNAMICS OF ETHANOLOGENIC YEAST IN RESPONSE TO 5-HYDROXYMETHYLFURFURAL STRESS RELATED TO BIOMASS CONVERSION TO ETHANOL
- (Abstract)
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Liu, Z., Slininger, P.J. 2005. Transcriptome dynamics of ethanologenic yeast in response to 5-hydroxymethylfurfural stress related to biomass conversion to ethanol [abstract]. Paper No. 177C. |
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BIOLOGICAL SOLUTIONS TO CROP PROTECTION. A SHIFT FROM THE CHEMICAL PARADIGM
- (Abstract)
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(11-Feb-05) |
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FUNCTIONAL GENOMICS OF MICROBIAL STRESS TOLERANCE
- (Abstract)
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(02-Dec-04) |
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DEVELOPMENT OF GENETICALLY ENGINEERED STRESS TOLERANT ETHANOLOGENIC YEASTS USING INTEGRATED FUNCTIONAL GENOMICS FOR EFFECTIVE BIOMASS CONVERSION TO ETHANOL
- (Book/Chapter)
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Liu, Z., Slininger, P.J. 2005. Development of genetically engineered stress tolerant ethanologenic yeasts using integrated functional genomics for effective biomass conversion to ethanol. In: Collins, K., Duffield, J., Outlaw, J., editors. Agriculture as a Producer and Consumer of Energy. Wallingford, UK: CAB International, p. 283-294. |
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