Projects

IDENTIFICATION AND CHARACTERIZATION OF GENES AFFECTING COOL AND COLD WATER AQUACULTURE PRODUCTION Appropriated (D)   Accession Number: 409183

DEVELOPMENT OF SUSTAINABLE LAND-BASED AQUACULTURE PRODUCTION SYSTEMS Appropriated (D)   Accession Number: 409196

DEVELOPMENT OF SUSTAINABLE LAND-BASED AQUACULTURE SYSTEMS Grant (G)   Accession Number: 409726

PRODUCTION OF AN INTEGRATED PHYSICAL AND GENETIC MAP FOR RAINBOW TROUT Reimbursable (R)   Accession Number: 411651

PERFORMANCE EVALUATION OF RAINBOW TROUT LINES AND TRIPLOID RAINBOW TROUT Specific Cooperative Agreement (S)   Accession Number: 414528

FUNCTIONAL GENOMICS RESEARCH FOR RAINBOW TROUT AQUACULTURE PRODUCTION Specific Cooperative Agreement (S)   Accession Number: 409751

PRODUCTION FOR SUPERIOR RAINBOW TROUT BROODSTOCKS BY GENETIC MANIPULATION Specific Cooperative Agreement (S)   Accession Number: 409543

Publications

SNP identification, genetic mapping and tissue expression of the rainbow trout TLR9 gene - (Peer Reviewed Journal) - (07-Apr-09)

Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis - (Abstract)

Vallejo, R.L., Wiens, G.D., Welch, T.J., Rexroad Iii, C.E., Palti, Y. 2009. Evidence of major genes for resistance to bacterial cold-water disease in rainbow trout using mixed inheritance multiple-threshold models and Bayesian segregation analysis. Gordon Research Conference Proceedings.

Microsatellite markers for species of genus Dionda (Cyprinidae) from the American southwest - (Peer Reviewed Journal) - (17-Dec-08)

A second generation genetic map for rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)

Rexroad Iii, C.E., Palti, Y., Gahr, S.A., Vallejo, R.L. 2008. A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BioMed Central (BMC) Genetics 2008, 9:74.

Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth - (Peer Reviewed Journal)

Silverstein, J., Vallejo, R.L., Palti, Y., Welch, T.J., Wiens, G.D., Rexroad Iii, C.E., Ducrocq, V., Leeds, T.D. 2008. Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth. Journal of Animal Science 2009.87:860-867

Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development - (Abstract)

Rexroad Iii, C.E., Palti, Y., Vallejo, R.L. 2009. Characterizing the Genetic Diversity of Rainbow Trout in Support of Broodstock Development. Meeting Abstract.

MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss) - (Abstract)

Salem, M., Xiao, C., Jonah, T., Rexroad III, C.E., Yao, J. 2009. MicroRNA repertoire for functional genome research in rainbow trout (Oncorhynchus mykiss). Meeting Abstract.

Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries - (Abstract)

Castano, C., Smith, T.P., Wiedmann, R.T., Yao, J., Rexroad III, C.E. 2009. Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries. Meeting Abstract.

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays - (Peer Reviewed Journal)

Koop, B., Von Schalburg, K., Leong, J., Walker, N., Lieph, R., Cooper, G., Robb, A., Beetz-Sargent, M., Holt, R.A., Moore, R., Brahmbhatt, S., Rosner, J., Mcgowan, C., Rexroad Iii, C.E., Davidson, W. 2008. A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. Biomed Central (BMC) Genomics. 9:545.

Microsatellite primers for red drum (Sciaenops ocellatus) - (Peer Reviewed Journal)

Karlsson, S., Renshaw, M., Rexroad III, C.E., Gold, J. 2008. Microsatellite primers for red drum (Sciaenops ocellatus). Fishery Bulletin 106:476-82.

Transcriptomic analysis of responses to infectious salmon anemia virus infection in macrophage-like cells - (Peer Reviewed Journal)

Schiotz, B.L., Jorgensen, S.M., Rexroad III, C.E., Gjoen, T., Krasnov, A. 2008. Transcriptomic analysis of responses to infectious salmon anemia virus infection in macrophage-like cells. Virus Research. 136:65-74.

Isolation and characterization of microsatellite markers in the Serra Spanish mackerel, Scomberomorus brasiliensis - (Peer Reviewed Journal)

Renshaw, M., Douglas, K., Rexroad Iii, C.E., Churney, A., Gold, J. 2009. Isolation and characterization of microsatellite markers in the Serra Spanish mackerel, Scomberomorus brasiliensis. Molecular Ecology Resources 9:830-832.

Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development - (Peer Reviewed Journal)

Ramachandra, R., Salem, M., Gahr, S.A., Rexroad III, C.E., Yao, J. 2008. Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development. Biomed Central (BMC) Genomics. 8:41.

Development of a 37K high-density oligo-nucleotide microarray for rainbow trout - (Peer Reviewed Journal)

Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2008. Development of a 37K high-density oligo-nucleotide microarray for rainbow trout. Journal of Fish Biology 72:(9)2187-2206.

Characterization of Linkage Disequilibrium in a Rainbow Trout Broodstock Population - (Abstract)

Rexroad III, C.E., Vallejo, R.L. 2008. Characterization of Linkage Disequilibrium in a Rainbow Trout Broodstock Population. Plant and Animal Genome Conference.

Genetic variations of 14-3-3E1 isoform in rainbow trout (Oncorhynchus mykiss) - (Abstract)

Wanna, W., Rexroad III, C.E., Jianbo, Y. 2008. Genetic variations of 14-3-3E1 isoform in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome Conference.

Single Nucleotide Polymorphism Discovery in Rainbow Trout - (Abstract)

Castano, C., Yao, J., Rexroad III, C.E. 2008. Single Nucleotide Polymorphism Discovery in Rainbow Trout. Meeting Abstract.

PCR primer pairs for 100 microsatellites in red drum (Sciaenops ocellatus) - (Peer Reviewed Journal)

Karlsson, S., Renshaw, M., Rexroad III, C.E., Gold, J. 2008. Pcr primer pairs for 100 microsatellites in red drum (sciaenops ocellatus). Molecular Ecology Notes. 8:393-398.

Effects of short term growth hormone treatment on the rainbow trout (Oncorhynchus mykiss) liver and muscle transcriptomes - (Peer Reviewed Journal)

Gahr, S.A., Vallejo, R.L., Weber, G.M., Shepherd, B.S., Silverstein, J., Rexroad III, C.E. 2008. Effects of short term growth hormone treatment on the rainbow trout (Oncorhynchus mykiss) liver and muscle transcriptomes. Physiological Genomics. 32:380-9.

PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT - (Abstract)

Palti, Y., Vallejo, R.L., Wiens, G.D., Rexroad III, C.E. 2008. Progress toward an immunogenetic map for rainbow trout. Plant and Animal Genome Conference.

Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)

Salem, M., Silverstein, J., Rexroad III, C.E., Jianbo, Y. Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss). Biomed Central (BMC) Genomics. 8:328.

Development of a High-density oligo-nucleotide microarray for rainbow trout - (Abstract)

Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2008. Development of a High-density oligo-nucleotide microarray for rainbow trout. Meeting Abstract.

Isolation and characterizaton of dinucleotide microsatellites in greater amberjack, Seriola dumerili - (Peer Reviewed Journal)

Renshaw, M.A., Patton, J., Rexroad III, C.E., Gold, J. 2007. Pcr primers for dinucleotide microsatellites in greater amberjack, seriola dumerili. Conservation Genetics 2007, 8(4):1009-1011.

IDENTIFICATION OF A NOVEL GERM CELL-SPECIFIC mRNA-LIKE TRANSCRIPT (RtGST-1) PREDOMINANTLY EXPRESSED IN EARLY PREVITELLGENIC OOCYTE IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Qiu, G., Rexroad III, C.E., Yao, J. 2007. Identification of a novel germ cell-specific mrna-like transcript (rtgst-1) predominantly expressed in early previtellgenic oocyte in rainbow trout (oncorhynchus mykiss). Society for the Study of Reproduction Annual Meeting.

INVOLVEMENT OF MICRORNAS IN EMBRYONIC GENOME ACTIVATION AS SHOWN BY DICER EXPRESSION IN RAINBOW TROUT - (Abstract)

Ramachandra, R., Gahr, S.A., Rexroad III, C.E., Yao, J. 2007. Involvement of micrornas in embryonic genome activation as shown by dicer expression in rainbow trout. Society for the Study of Reproduction Annual Meeting.

Identification of RtGST-1, a novel germ cell-specific mRNA-like transcript predominantly expressed in early previtellgenic oocytes in rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)

Qiu, G., Weber, G.M., Rexroad III, C.E., Yao, J. 2008. Identification of RtGST-1, a novel germ cell-specific mRNA-like transcript predominantly expressed in early previtellgenic oocytes in rainbow trout (Oncorhynchus mykiss). Molecular Reproduction and Development. 75:723-30.

Genomic Organization of the igf1, igf2, myf5, myf6 and grf/pacap Genes across Salmoninae Genera - (Peer Reviewed Journal)

Hoghadam, H., Ferguson, M.M., Rexroad III, C.E., Coulibaly, I., Danzmann, R.G. 2007. Genomic Organization of the igf1, igf2, myf5, myf6 and grf/pacap Genes across Salmoninae Genera. Animal Genetics 38(5):527-32.

PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT - (Abstract)

Palti, Y., Rexroad III, C.E., Vallejo, R.L., Wiens, G.D. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.

Evolutionary sequenomics: The utility of comparative chromosomal synteny searches in revealing homologous DNA blocks derived from fish-specific 3R- and 4R-genome duplications - (Abstract) - (17-May-07)

Genome Sequence of Flavobacterium psychrophilum Strain CSF 259-93 and Characterization of a Large Cluster of Genes Containing Short Repeats - (Abstract)

Wiens, G.D., Welch, T.J., Rexroad III, C.E., Lapatra, S., Call, D.R., Hunnicutt, D., Bhattacharyya, A., Campbell, J., Walunas, T. 2007. Genome Sequence of Flavobacterium psychrophilum Strain CSF 259-93 and Characterization of a Large Cluster of Genes Containing Short Repeats. Meeting Abstract Pg 12.

CHARACTERIZATION OF EXPRESSED SEQUENCE TAGS FROM THE PITUITARY OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Gahr, S.A., Rise, M., Hunt, P., Koop, B., Rexroad III, C.E. 2007. Characterization of expressed sequence tags from the pituitary of rainbow trout (oncorhynchus mykiss). Animal Biotechnology. 18(3):213-230.

Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout - (Abstract)

Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. Associations of Markers Linked to Major Histocompatibility (MH) Regions With Disease Resistance in Rainbow Trout. Meeting Abstract.

PROGRESS TOWARD AN IMMUNOGENETIC MAP FOR RAINBOW TROUT - (Abstract)

Fincham, M.R., Wiens, G.D., Rexroad III, C.E., Vallejo, R.L., Palti, Y. 2007. Progress toward an immunogenetic map for rainbow trout. Meeting Abstract.

Molecular Characterization and Expression Profiles of Cyclin B1, B2 and Cdc2 Kinase during Oogenesis and Spermatogenesis in Rainbow Trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)

Qiu, G., Ramachandra, R.K., Rexroad III, C.E., Yao, J. Molecular Characterization and Expression Profiles of Cyclin B1, B2 and Cdc2 Kinase during Oogenesis and Spermatogenesis in Rainbow Trout (Oncorhynchus mykiss). Animal Reproduction Sciences 105:209-225.

DEVELOPMENT AND CRITICAL EVALUATION OF A NEW MULTIPLEX SYSTEM FOR PARENTAL ALLOCATION AND BROODSTOCK MANAGEMENT IN RAINBOW TROUT - (Peer Reviewed Journal)

Johnson, N., Rexroad III, C.E., Eric, H., Vallejo, R.L., Palti, Y. 2007. Development and critical evaluation of a new multiplex system for parental allocation and broodstock management in rainbow trout. Aquaculture 266:53-62.

THE COMPLETE NUCLEAR ESTROGEN RECEPTOR FAMILY IN THE RAINBOW TROUT: DISCOVERY OF THE NOVEL ER.2 AND BOTH ER. ISOFORMS - (Peer Reviewed Journal)

Nagler, J., Cavileer, T., Sullivan, J., Cyr, D., Rexroad III, C.E. 2007. The complete nuclear estrogen receptor family in the rainbow trout: discovery of the novel er.2 and both er. isoforms. Gene Vol 392(1-2)164-173.

Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout - (Abstract)

Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. World Aquaculture Society Meeting.

Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout - (Abstract)

Palti, Y., Johnson, N., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Associations of Markers Linked to Major Histocompatibility (MH) Regions and to Other Immune Response Genes with Disease Resistance in Rainbow Trout. Plant and Animal Genome Abstracts Pg. 11.

Radiation Hybrid Mapping in Aquatic Species - (Book/Chapter)

Rexroad III, C.E. 2007. Radiation Hybrid Mapping in Aquatic Species. Aquaculture Genome Technologies Chapter 18.

Identification of Ests From The Rainbow Trout Pituitary - (Abstract)

Rexroad III, C.E., Gahr, S.A. 2007. Identification of Ests From The Rainbow Trout Pituitary. Plant and Animal Genome Conference.

INTEGRATION OF MOLECULAR GENETIC INFORMATION INTO THE NCCCWA SELECTIVE BREEDING PROGRAM FOR RAINBOW TROUT - (Proceedings/Symposium)

Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Integration of molecular genetic information into the ncccwa selective breeding program for rainbow trout. Israeli Journal of Aquaculture 58(4) 323-7.

The genetic architecture of development rate in rainbow trout: QTL, QTL x maternal environment, and candidate gene expression - (Abstract)

Nichols, K., Broman, K., Gahr, S.A., Rexroad III, C.E., Sundin, K., Young, J., Phillips, R., Wheeler, P., Thorgaard, G. 2006. The genetic architecture of development rate in rainbow trout: QTL, QTL x maternal environment, and candidate gene expression. [abstract]. 4th Ecological Genomics Symposium.

ASSIGNMENT OF RAINBOW TROUT LINKAGE GROUPS TO SPECIFIC CHROMOSOMES - (Peer Reviewed Journal)

Phillips, R., Nichols, K., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Gahr, S.A., Danzmann, R., Drew, R., Thorgaard, G. 2006. Assignment of rainbow trout linkage groups to specific chromosomes. Genetics 174(3):1661-1670.

MAPPING OF TOLL LIKE RECEPTOR (TLR) GENES IN RAINBOW TROUT - (Peer Reviewed Journal)

Palti, Y., Rodriguez, F., Vallejo, R.L., Rexroad III, C.E. 2006. Mapping of toll like receptor (TLR) genes in rainbow trout. Animal Genetics 37(6):597-598.

MAPPING OF GENES IN A REGION ASSOCIATED WITH UPPER TEMPERATURE TOLERANCE IN RAINBOW TROUT - (Peer Reviewed Journal)

Coulibaly, I., Danzmann, R., Palti, Y., Vallejo, R.L., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Mapping of genes in a region associated with upper temperature tolerance in rainbow trout. Animal Genetics 37(6):598-599.

EMBRYONIC EXPRESSION OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT - (Peer Reviewed Journal)

Coulibaly, I., Gahr, S.A., Yao, J., Rexroad III, C.E. 2006. Embryonic expression of uncoupling protein 2 genes in rainbow trout. Fish Physiology and Biochemistry Journal 32:249-253.

MICROARRAY GENE EXPRESSION ANALYSIS IN ATROPHYING RAINBOW TROUT MUSCLE: AN UNIQUE NON-MAMMALIAN MUSCLE DEGRADATION MODEL - (Peer Reviewed Journal)

Salem, M., Kenney, B., Rexroad III, C.E., Yao, J. 2006. Microarray gene expression analysis in atrophying rainbow trout muscle: an unique non-mammalian muscle degradation model. Physiological Genomics 28:33-45.

GENOMIC STRUCTURE AND EXPRESSION OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2006. Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (oncorhynchus mykiss). Biomed Central (BMC) Genomics 7:203.

Identification of OORP-T, a novel oocyte-specific gene encoding a protein with a conserved oxysterol binding protein domain in rainbow trout - (Peer Reviewed Journal)

Ramachandra, R.K., Lankford, S.E., Weber, G.M., Rexroad III, C.E., Yao, J. 2006. Identification of OORP-T, a novel oocyte-specific gene encoding a protein with a conserved oxysterol binding protein domain in rainbow trout. Molecular Reproduction and Development 74(4) 502-11.

GENOMIC RESOURCES FOR STUDYING EARLY LIFE STAGE SALMONID HEALTH - (Abstract)

Rise, M., Honeyfield, D.C., Devlin, R.H., Rexroad III, C.E., Davidson, W.S., Koop, B.F. 2006. Genomic resources for studying early life stage salmonid health. Meeting Abstract. 7:192

GENETICS AND GENOMICS - INTEGRATION OF MOLECULAR GENETICS INTO A BREEDING PROGRAM FOR RAINBOW TROUT - (Proceedings/Symposium)

Silverstein, J., Weber, G.M., Rexroad III, C.E., Vallejo, R.L. 2006. Genetics and genomics - integration of molecular genetics into a breeding program for rainbow trout. Israeli Journal of Aquaculture 2006. 58:231.

SELECTIVE BREEDING AND GENETIC MAPPING OF DISEASE RESISTANCE IN RAINBOW TROUT - (Abstract)

Palti, Y., Rexroad Iii, C.E., Welch, T.J., Wiens, G.D., Silverstein, J., Vallejo, R.L. 2006. Selective breeding and genetic mapping of disease resistance in rainbow trout. Meeting Abstract. Presented at The 9th International Symposium of The International Association for Genetics in Aquaculture, June 26-30, 2006 at Montpellier, France. Meeting Book of Abstracts p. 81.

PCR PRIMERS FOR TRINUCLEOTIDE AND TETRANUCLEOTIDE MICROSATELLITES IN GREATER AMBERJACK, SERIOLA DUMERILI - (Peer Reviewed Journal)

Renshaw, M.A., Patton, J.C., Rexroad III, C.E., Gold, J.R. 2006. Pcr primers for trinucleotide and tetranucleotide microsatellites in greater amberjack, seriola dumerili. Molecular Ecology Notes 6: 1162-1164.

FASTING AND REFEEDING EFFECTS THE EXPRESSION OF THE INHIBITOR OF DNA BINDING (ID)GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) MUSCLE - (Peer Reviewed Journal)

Gahr, S.A., Weber, G.M., Rexroad III, C.E. 2006. Fasting and refeeding effects the expression of the inhibitor of dna binding (id)genes in rainbow trout (Oncorhynchus mykiss) muscle. Comparative Biochemistry and Physiology. 144:472-477.

GENE EXPRESSION AND CELLULAR IMMUNE RESPONSE OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) EXPOSED TO YERSINIA RUCKERI: A MODEL SYSTEM FOR UNDERSTANDING MECHANISMS OF TELEOST PROTECTIVE IMMUNITY - (Abstract)

Wiens, G.D., Lapatra, S., Palti, Y., Rexroad III, C.E., Yao, J., Welch, T.J. 2006. Gene expression and cellular immune response of rainbow trout (Oncorhynchus mykiss) exposed to Yersinia ruckeri: A model system for understanding mechanisms of teleost protective immunity. 10th International Congress, International Society of Developmental and Comparative Immunology, July 1 - 6, 2006. Meeting Abstract. Page 249.

SALMONID GENOMIC SEQUENCING INITIATIVE: THE CASE FOR SEQUENCING THE GENOMICS OF ATLANTIC SALMON (SALMO SALAR) AND RAINBOW TROUT (ONCORYNCHUS MYKISS) - (Government Publication)

Davidson, W., Chevalet, C., Rexroad III, C.E., Omholt, S. 2006. Salmonid genomic sequencing initiative: the case for sequencing the genomics of atlantic salmon (salmo salar) and rainbow trout (oncorynchus mykiss). Government Publication/Report. p. 1-22.

MOLECULAR CHARACTERIZATION OF FISH MUSCLE ATROPHY AND PROTEOLYSIS ASSOCIATED WITH SPAWNING - (Peer Reviewed Journal)

Mohamed, S., Keeney, B., Rexroad III, C.E., Yao, J. 2006. Molecular characterization of fish muscle atrophy and proteolysis associated with spawning. Comparative Biochemistry and Physiology 1(2):227-237.

ANABOLIC EFFECTS OF FEEDING BETA-2 ADRENERGIC AGONISTS ON RAINBOW TROUT MUSCLE PROTEASES AND MYOFIBRILLAR PROTEINS - (Peer Reviewed Journal)

Salem, M., Levesque, A., Moon, T., Rexroad III, C.E., Yao, J. 2006. Anabolic effects of feeding beta-2 adrenergic agonists on rainbow trout muscle proteases and myofibrillar proteins. Comparative Biochemistry and Physiology. 1 44(2) 145-154.

GENETICS AND GENOMICS-INTREGRATION OF BREEDING AND MOLECULAR GENETICS PROGRAMS - (Abstract)

Silverstein, J., Weber, G.M., Rexroad Iii, C.E., Vallejo, R.L. 2006. Genetics and genomics-intregration of breeding and molecular genetics programs. Meeting Abstract. Presented at BARD sponsored workshop on Aquaculture Genetics in Eilat, Israel, Feb 20-23, 2006.

COMPARATIVE MAPS OF SALMONID GENOMES: AN UPDATE - (Abstract)

Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Guyomard, R., Ferguson, M., Danzmann, R. 2006. Comparative maps of salmonid genomes: an update. Meeting Abstract. Montpellier, France 6/25 - 30, 2006.

PROGRESS TOWARD A GENE MAP FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Gharbi, K., Coulibaly, I., Rexroad III, C.E., Moghadam, H., Leder, E.H., Ng, S., Davidson, W., Ferguson, M., Danzmann, R. 2006. Progress toward a gene map for rainbow trout (oncorhynchus mykiss). Meeting Abstract International Symposium for Genetics in Aquaculture 6/25-30, 2006 Montpellier, France.

GENOMICS AND GENETICS:MOLECULAR VARIATION, BIOINFORMATICS AND FUNCTIONAL GENOMICS, IMPLEMENTATION INTO THE NCCCWA BREEDING PROGRAM - (Abstract)

Rexroad III, C.E., Palti, Y., Vallejo, R.L., Silverstein, J. 2006. Genomics and genetics:molecular variation, bioinformatics and functional genomics, implementation into the ncccwa breeding program. BARD Workshop: Aquaculture Genetics-Status and Prospects, Eilat, Israel. Meeting Abstract.

IDENTIFICATION AND CHARACTERIZATION OF MICROSATELLITES FOR STRIPED BASS FROM REPEAT-ENRICHED LIBRARIES - (Peer Reviewed Journal)

Rexroad III, C.E., Vallejo, R.L., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2006. Identification and characterization of microsatellites for striped bass from repeat-enriched libraries. Conservation Genetics 7(6) 971-982.

MICROSATELLITE MARKERS FOR POPULATION GENETICS AND GENOME MAPPING IN STRIPED BASS - (Abstract)

Rexroad III, C.E., Coulibaly, I., Couch, C., Garber, A., Westerman, M., Sullivan, C. 2005. Microsatellite markers for population genetics and genome mapping in striped bass. Plant and Animal Genome Conference. Abstract ID P638, page 261.

THE NATIONAL CENTER FOR COOL AND COLD WATER AQUACULTURE GENETIC MAP FOR RAINBOW TROUT - (Abstract)

Rexroad III, C.E., Danzmann, R., Palti, Y., Vallejo, R.L. 2005. The national center for cool and cold water aquaculture genetic map for rainbow trout. Plant and Animal Genome Conference. Abstract ID P639, page 261.

CHARACTERIZATION OF MAJOR HISTOCOMPATIBILITY (MH) HAPLOTYPES AND THEIR ASSOCIATION WITH DISEASE RESISTANCE IN RAINBOW TROUT - (Abstract)

Palti, Y., Rexroad III, C.E., Welch, T.J., Wiens, G.D., Silverstein, J. 2005. Characterization of major histocompatibility (MH) haplotypes and their association with desease resistance in rainbow trout. Plant and Animal Genome Conference. Abstract ID P643, page 262.

MAPPING, EXPRESSION, AND MOLECULAR VARIATION OF POTENTIAL CANDIDATE GENES UNDERLYING A MAJOR EMBRYONIC DEVELOPMENT RATE QTL IN RAINBOW TROUT - (Abstract)

Nichols, K., Gahr, S.A., Rexroad III, C.E., Phillips, R., Thorgaard, G. 2005. Mapping, expression, and molecualr variation of potential candidate genes underlying a major embryonic development rate qtl in rainbow trout. Plant and Animal Genome Conference. Abstract ID W205, page 54.

GENOMIC STRUCTURE AND EXPRESSION PATTERNS OF UNCOUPLING PROTEIN 2 GENES IN RAINBOW TROUT - (Abstract)

Coulibaly, I., Gahr, S.A., Palti, Y., Yao, J., Rexroad III, C.E. 2005. Genomic structure and expression patterns of uncoupling protein 2 genes in rainbow trout. Plant and Animal Genome Conference. Abstract ID W188, page 50.

EFFECTS OF RECOMBINANT BOVINE SOMATOTROPIN (RBST) ON THE LIVER AND MUSCLE TRANSCRIPTOMES OF HIGH GROWTH RATE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Gahr, S.A., Weber, G.M., Shepherd, B.S., Silverstein, J., Vallejo, R.L., Coulibaly, I., Rexroad III, C.E. 2005. Effects of Recombinant Bovine Somatotropin (rbst) on the Liver and Muscle Transcriptomes of High Growth Rate Rainbow Trout (Oncorhynchus Mykiss). Plant and Animal Genome Conference, Jan 2006. Abstract ID P534, pg 260.

A PCR SCREENING METHOD FOR RAPID DETECTION OF MICROSATELLITES IN BACTERIAL ARTIFICIAL CHROMOSOMES (BACS) - (Peer Reviewed Journal)

Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2006. A pcr screening method for rapid detection of microsatellites in bacterial artificial chromosomes (bacs). Marine Biotechnology DOI: 10.1007/s10126-005-5064-7. Online Publication 5/25/2006.

ISOLATION AND CHARACTERIZATION OF 149 NOVEL MICROSATELLITE DNA MARKERS FOR STRIPED BASS, MORONE SAXATILIS, AND CROSS-SPECIES AMPLIFICATION IN WHITE BASS, M. CHRYSOPS, AND THEIR HYBRID - (Peer Reviewed Journal)

Couch, C., Garber, A., Rexroad III, C.E., Abrams, J., Stannard, J., Westerman, M., Sullivan, C. 2006. Isolation and characterization of 149 novel microsatellite dna markers for striped bass, morone saxatilis, and cross-species amplification in white bass, m. chrysops, and their hybrid. Molecular Ecology Notes 6(3):667-669.

Starvation induced alterations in hepatic lysine metabolism in different families of rainbow trout (Oncorhynchus mykiss) - (Peer Reviewed Journal)

Higgins, A., Silverstein, J., Engles, J., Wilson, M., Rexroad III, C.E., Blemmings, K. 2006. Starvation induced alterations in hepatic lysine metabolism in different families of rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 31(1):33-44.

CRITICAL EVALUATION OF A NEW MULTIPLEX SYSTEM USED FOR PARENTAL ALLOCATION AND BROODSTOCK MANAGEMENT IN RAINBOW TROUT (Oncorhynchus mykiss) SELECTION PROGRAMS - (Abstract)

Johnson, N., Palti, Y., Rexroad III, C.E., Silverstein, J., Vallejo, R.L. 2006. Critical evaluation of a new multiplex system used for parental allocation and broodstock management in rainbow trout (oncorhynchus mykiss) selection programs. World Aquaculture Society Meeting.

ESTROGEN RECEPTOR ALPHA-2: A NOVEL ISOFORM FROM THE RAINBOW TROUT - (Abstract)

Nagler, J., Cavileer, T., Cyr, D., Rexroad III, C.E. 2005. Estrogen receptor alpha-2: a novel isoform from the rainbow trout. Society for the Study of Reproduction Annual Meeting. 38:M184.

GENOMIC SEQUENCE AND ANNOTATION OF A REGION THAT HARBORS MAJOR HISTOCOMPATIBILITY GENES IN RAINBOW TROUT - (Abstract)

Palti, Y., Rodriguez, M.F., Gahr, S.A., Rexroad Iii, C.E., Hansen, J.D. 2005. Genomic sequence and annotation of a region that harbors major histocompatibility genes in rainbow trout. Meeting Abstract. The 3rd International Symposium of Genetics of Animal Health, July 13-15, 2005 held in Ames, Iowa, USA, Meeting Book of Abstracts p. 124.

IDENTIFICATION OF A NOVEL GILL SPECIFIC CALPAIN FROM THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Salem, S., Rexroad Iii, C.E., Yao, J. 2006. Identification of a novel gill specific calpain from the rainbow trout (oncorhynchus mykiss). Fish Physiology and Biochemistry Journal. 32:1-6.

CHARACTERIZATION OF THE CALPASTATIN GENE IN FISH: ITS POTENTIAL ROLE IN MUSCLE GROWTH AND FILLET QUALITY - (Peer Reviewed Journal)

Mohamed, S., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Characterization of the calpastatin gene in fish: its potential role in muscle growth and fillet quality. Comparative Biochemistry and Physiology 141: 488-97.

MICROSATELLITE DEVELOPMENT FOR A HYBRID STRIPED BASS (MORONE CHRYSOPS X M. SAXATILIS) SELECTIVE BREEDING PROGRAM - (Abstract)

Couch, C., Garber, A., Abrams, J., Rexroad III, C.E., Westerman, M., Sullivan, C. 2005. Microsatellite development for a hybrid striped bass (morone chrysops x m. saxatilis) selective breeding program. Meeting Abstract. International Marine Biotechnology Conference, June 7 - 12, 2005, St. Johns, New Foundland, Canada.

TRANSCRIPTOME RESPONSES TO CARBON TETRACHLORIDE AND PYRENE IN THE KIDNEY AND LIVER OF JUVENILE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Krasnov, A., Koskinen, H., Rexroad III, C.E., Afanasyev, S., Molsa, H., Oikari, A. 2005. Transcriptome responses to carbon tetrachloride and pyrene in the kidney and liver of juvenile rainbow trout (oncorhynchus mykiss). Aquatic Toxicology 74: 70-81.

A COMPARATIVE ANALYSIS OF THE RAINBOW TROUT GENOME WITH TWO OTHER SPECIES OF FISH (ARCTIC CHARR AND ATLANTIC SALMON) WITHIN THE TETRAPLOID DERIVATIVE SALOMIDAE FAMILY (SUBFAMILY: SALMONINAE) - (Peer Reviewed Journal)

Danzmann, R., Cairney, M., Ferguson, M., Gharbi, K., Guyomard, R., Holm, L., Hoyheim, B., Leder, E.H., Okamoto, N., Ozaki, A., Rexroad III, C.E., Sakomoto, T., Taggart, J., Woram, R. 2005. A comparative analysis of the rainbow trout genome with two other species of fish (arctic charr and atlantic salmon) within the tetraploid derivative salomidae family (subfamily: salmoninae). Genome 2005 Dec;48(6):1037-51.

COMPARATIVE MAPPING OF EXPRESSED SEQUENCE TAGS CONTAINING MICROSATELLITES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Rexroad III, C.E., Rodriguez, M.F., Gharbi, K., Danzmann, R., Dekoning, J., Phillips, R., Palti, Y. 2005. Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (oncorhynchus mykiss). Genomics. BMC Genomics 6:54.

IDENTIFICATION AND EXPRESSION PROFILE OF THE ID GENE FAMILY IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Gahr, S.A., Rodriguez, M.F., Rexroad III, C.E. 2005. Identification and expression profile of the id gene family in rainbow trout (oncorhynchus mykiss). Biochimica et Biophysica Acta 1729:64-73.

IDENTIFYING CANDIDATE GENES FOR RAINBOW TROUT ONCORHYNCHUS MYKISS AQUACULTURE RESEARCH - (Abstract)

Rexroad III, C.E., Gahr, S.A., Palti, Y. 2005. Identifying candidate genes for rainbow trout (Oncorhynchus mykiss) aquaculture research. Aquaculture America Conference page 362, January 17-20, New Orleans, LA.

DEVELOPMENT OF COMPARATIVE MAPS USING MICROSATELLITES DEVELOPED FROM RAINBOW TROUT EST - (Abstract)

Rexroad III, C.E., Rodriguez, M.F., Danzmann, R., Palti, Y. 2005. Development of comparative maps using microsatellites developed from rainbow tourt est. Plant and Animal Genome XIII P604, page 221.

GENE EXPRESSION OF THE INHIBITOR OF DNA BINDING (ID) PROTEINS DURING EMBRYONIC DEVELOPMENT IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Gahr, S.A., Rexroad III, C.E. 2005. Gene expression of the inhibitor of DNA binding (ID) proteins during embryonic development in the rainbow trout (oncorhynchus mykiss). Aquaculture America Conference January 17-20, page 140 New Orleans, LA.

MOLECULAR CHARACTERIZATION OF CALPASTATINS FROM RAINBOW TROUT: THEIR ROLE IN MUSCLE GROWTH AND FILLET TEXTURE DEVELOPMENT - (Abstract)

Salem, M., Yao, J., Rexroad III, C.E., Kenney, B., Semmens, K., Killefer, J., Nath, J. 2005. Molecular characterization of calpastatins from rainbow trout: their role in muscle growth and fillet texture development. Aquaculture America Conference 2005 page 388.

TRANSCRIPTOME ANALYSES OF RAINBOW TROUT OOCYTES - (Abstract)

Yao, J., Higgins, A., Rexroad III, C.E. 2005. Transcriptome analyses of rainbow trout oocytes. Plant and Animal Genome XIII p33, page 88.

GENOMIC CHARACTERIZATION OF RAINBOW TROUT (ONCORHYNCHUS MYKISS) TOLL-LIKE RECEPTOR GENES - (Abstract)

Rodriguez, M.F., Wiens, G.D., Gahr, S.A., Rexroad III, C.E., Palti, Y. 2005. Genomic characterization of rainbow trout (Oncorhynchus mykiss) toll-like receptor genes. Plant and Animal Genome XIII Abstract W030 page 12.

GENOMIC SEQUENCING OF A RAINBOW TROUT MAJOR HISTOCOMPATIBILITY REGION THAT HARBORS CLASS II AND CLASS III GENES - (Abstract)

Palti, Y., Fincham, M.R., Rodriguez, M.F., Gahr, S.A., Rexroad III, C.E., Hansen, 2005. J. Genomic sequencing of a rainbow trout major histocompatibility region that harbors class ii and class iii genes. Plant and Animal Genome XIII Abstracts P606, pg 222.

ASSIGNMENT OF RAINBOW TROUT LINKAGE GROUPS TO SPECIFIC CHROMOSOMES - (Abstract)

Phillips, R., Noakes, M., Dekoning, J., Morasch, M., Keatley, K., Rexroad III, C.E., Palti, Y., Danzmann, R., Nichols, K., Drew, R., Thorgaard, G. 2005. Assignment of rainbow trout linkage groups to specific chromosomes. Plant and Animal Genome XIII Abstracts W034, page 13.

CHARACTERIZATION AND COMPARISON OF MICROSATELLITES DERIVED FROM REPEAT-ENRICHED LIBRARIES AND EXPRESSED SEQUENCE TAGS - (Peer Reviewed Journal)

Coulibaly, I., Gharbi, K., Danzmann, R., Yao, J., Rexroad III, C.E. 2005. Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags. Animal Genetics 36, 309-315.

COMPARISONS OF MICROSATELLITES DERIVED FROM REPEAT-ENRICHED LIBRARIES AND EST IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Coulibaly, I., Yao, J., Rexroad III, C.E. 2005. Comparisons of microsatellites derived from repeat-enriched libraries and est in rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome XIII P602 pg 221.

TISSUE DISTRIBUTION AND EMBRYONIC EXPRESSION OF THE INHIBITOR OF DIFFERENTIATION/DNA BINDING (ID) FAMILY OF PROTEINS IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Gahr, S.A., Rexroad III, C.E. 2005. Tissue distribution and embryonic expression of the inhibitor of differentiation/DNA binding (ID) family of proteins in the rainbow trout (Oncorhynchus mykiss). Plant and Animal Genome, XIII P603, pg 221.

GENE EXPRESSION IN THE BRAIN AND KIDNEY OF RAINBOW TROUT IN RESPONSE TO HANDLING STRESS - (Peer Reviewed Journal)

Krasnov, A., Koskinen, H., Petri, P., Rexroad Iii, C.E., Afanasyev, S., Molsa, H. 2005. Gene expression in the brain and kidney of rainbow trout in response to handling stress. Biomed Central (BMC) Genomics 6:3.

HETEROSIS AND GENETIC DISTANCE IN STRAIN CROSSES OF RAINBOW TROUT - (Abstract)

Silverstein, J., Parsons, J., Rexroad III, C.E., Palti, Y. 2005. Heterosis and genetic distance in strain crosses of rainbow trout. Aquaculture America Conference 2005. New Orleans, LA 1/17 - 1/20/2005.

MICROSATELLITE DNA MARKERS FOR POPULATION-GENETIC STUDIES AND PARENTAGE ASSIGNMENT COBIA, RACHYENTRON CANADUM - (Peer Reviewed Journal)

Pruett, C., Saillant, E., Renshaw, M., Patton, J., Rexroad Iii, C.E., Gold, J., Microsatellite dna markers for population-genetic studies and parentage assignment cobia, rachyentron canadum. Molecular Ecology Notes 5: 84-86.

IDENTIFICATION AND MOLECULAR CHARACTERIZATION OF THE RAINBOW TROUT CALPAINS (CAPN1 AND CAPN2)THEIR EXPRESSION IN MUSCLE WASTING DURING STARVATION - (Peer Reviewed Journal)

Salem, M., Nath, J., Rexroad III, C.E., Killefer, J., Yao, J. 2005. Identification and molecular characterization of the rainbow trout calpains (capn1 and capn2)their expression in muscle wasting during starvation. Comparative Biochemistry and Physiology 140:63-71.

CHARACTERIZATION OF POLYMORPHIC MICROSATELLITES IN THE PACIFIC SARDINE SARDINOPS SAGAX SAGAX (CLUPEIDAE) - (Peer Reviewed Journal)

Pereyra, R., Saillant, E., Pruett, C., Rexroad III, C.E., Rocha-Olivares, A., Gold, J. 2004. Characterization of polymorphic microsatellites in the pacific sardine sardinops sagax sagax (clupeidae). Molecular Ecology Notes 4(4):739-41.

GENOMIC CHARACTERIZATION OF A NOVEL PAIR OF ID GENES IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Gahr, S.A., Rexroad III, C.E., Palti, Y. 2004. Genomic characterization of a novel pair of id genes in the rainbow trout (oncorhynchus mykiss). Animal Genetics. 35(4):317-320.

RESPONSE OF RAINBOW TROUT TRANSCRIPTOME TO MODEL CHEMICAL CONTAMINANTS - (Peer Reviewed Journal)

Koskinen, H., Pehkonen, P., Vehniainen, E., Krasnov, A., Rexroad III, C.E., Afanasyev, S., Molsa, H., Oikari, A. 2004. Response of rainbow trout transcriptome to model chemical contaminants. Biochemical and Biophysical Research Communications. 320(3):745-753.

THE 14-3-3 PROTEINS IN THE TELEOST FISH RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Koskinen, H., Krasnov, A., Rexroad III, C.E., Gorodilov, Y., Afanasyev, S., Molsa, H. 2004. The 14-3-3 proteins in the teleost fish rainbow trout (oncorhynchus mykiss). Journal Experimental Biology 207(19):3361-8.

GENOMIC CHARACTERIZATION AND EXPRESSION OF THE ID PROTEIN GENES IN THE RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Gahr, S.A., Rexroad III, C.E. 2004. Genomic characterization and expression of the id protein genes in the rainbow trout (oncorhynchus mykiss). Experimental Biology. April 17-21, 2004. Abstract 233.2.

GENOMIC CHARACTERIZATION AND EXPRESSION ANALYSIS OF A TUMOR NECROSIS FACTOR SUPERFAMILY 13B (TNFSF 13B) HOMOLOGUE FROM RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Wiens, G.D., Gahr, S.A., Morrison, C., Palti, Y., Rexroad III, C.E., Rodriguez, M.F., Welch, T.J. 2004. Genomic characterization and expression analysis of a tumor necrosis factor superfamily 13b (tnfsf 13b) homologue from rainbow trout (oncorhynchus mykiss). International Immunology Congress p. 82C (abstract W15.15).

APPLYING GENOMICS TO SALMONID AQUACULTURE - (Trade Journal)

Rexroad III, C.E. 2004. Applying genomics to salmonid aquaculture. Global Aquaculture Advocate. 7(2):46-47.

CHARACTERIZATION OF A NEW BAC LIBRARY FOR RAINBOW TROUT - (Peer Reviewed Journal)

Palti, Y., Gahr, S.A., Rexroad III, C.E. 2004. Characterization of a new bac library for rainbow trout. Animal Genetics.35(2):130-133.

A GENETIC LINKAGE MAP FOR ARCTIC CHAR (SALVELINUS ALPINUS): EVIDENCE FOR HIGHER RECOMBINATION RATES AND SEGRETATION DISTORTION IN HYBRID VERSUS PURE STRAIN MAPPING PARENTS - (Peer Reviewed Journal)

Woram, R.A., Mcgowan, C., Stout, J.A., Gharbi, K., Ferguson, M.M., Hoyheim, B., Davidson, W.S., Rexroad III, C.E., Danzmann, R.G. 2004. A genetic linkage map for arctic char (salvelinus alpinus): evidence for higher recombination rates and segretation distortion in hybrid versus pure strain mapping parents. Genome. 47:304-315.

APPLYING GENOMICS TO SALMONID AQUACULTURE - (Abstract)

Rexroad III, C.E. 2004. Applying genomics to salmonid aquaculture. World Aquaculture Society Meeting. p.497.

IDENTIFICATION AND USE OF POLYMORPHIC MARKERS IN RAINBOW TROUT - (Abstract)

Stewart, A., Dailey, R., Rexroad Iii, C.E. 2004. Identification and use of polymorphic markers in rainbow trout. World Aquaculture Society Meeting. March 1 - 5, 2004 Honolulu, Hawaii.

THE EFFECT OF GENETICS AND STARVATION ON LYSINE CATABOLISM IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) LIVER - (Abstract)

Federation of American Societies for Experimental Biology Conference J. 18(4):A539

IDENTIFICATION OF ANONYMOUS MICROSATELLITE MARKERS FOR MAPPING IN RAINBOW TROUT - (Abstract)

Coulibaly, I., Rexroad III, C.E. 2004. Identification of anonymous microsatellite markers for mapping in rainbow trout. Plant and Animal Genome Abstracts. Abstract P718. p.250.

IDENTIFICATION AND CHARACTERIZATION OF TWO INHIBITOR OF DIFFERENTIATION (ID) GENES IN RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Gahr, S.A., Palti, Y., Rexroad III, C.E. 2004. Identification and characterization of two inhibitor of differentiation (id) genes in rainbow trout (oncorhynchus mykiss). Plant and Animal Genome Abstracts. p.252.

PHYSICAL MAPPING OF LOCI OF INTEREST IN RAINBOW TROUT: EVIDENCE FOR GENOME-WIDE DUPLICATION - (Abstract)

Palti, Y., Gahr, S.A., Hansen, J., Rexroad III, C.E. 2004. Physical mapping of loci of interest in rainbow trout: evidence for genome-wide duplication. Plant and Animal Genome Abstracts. p.251.

EXPRESSED SEQUENCE TAGS IN RAINBOW TROUT INTESTINE, LIVER, AND KIDNEY (ONCORHYNCHUS MYKISS) - (Abstract)

Stewart, A., Soonhag, K., Killefer, J., Rexroad III, C.E. 2004. Expressed sequence tags in rainbow trout intestine, liver, and kidney (oncorhynchus mykiss). Plant and Animal Genome Abstracts. Abstract P53. p.85.

A PROPOSAL ADVOCATING DRAFT SEQUENCING THE GENOME OF RAINBOW TROUT, ONCORHYNCHUS MYKISS - (Review Article)

Rexroad III, C.E., Palti, Y., Thorgaard, G., Hansen, J., Silverstein, J., Weber, G.M., Wiens, G.D., Gahr, S.A., Rodriguez, M.F., Coulibaly, I., Overturf, K. 2004. A proposal advocating draft sequencing the genome of rainbow trout, oncorhynchus mykiss. Government Publication/Report.. Dept of Energy Joint Genome Institute Community Sequencing Program.

SEQUENCE ANALYSIS OF A RAINBOW TROUT CDNA LIBRARY AND CREATION OF A GENE INDEX - (Peer Reviewed Journal)

Rexroad III, C.E., Gahr, S.A., Palti, Y., Karamycheva, S., Keele, J.W., Quackenbush, J. 2003. Sequence analysis of a rainbow trout cdna library and creation of a gene index. Cytogenetics and Genome Research. 102(1-4):347-354.

CHARACTERIZATION OF TWENTY FOUR MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Rodriguez, M.F., Rexroad III, C.E., Palti, Y. 2003. Characterization of twenty four microsatellite markers for rainbow trout (oncorhynchus mykiss). Molecular Ecology Notes. 3(4):619-622.

MOLECULAR CHARACTERIZATION OF A PUTATIVE TUMOR NECROSIS FACTOR SUPERFAMILY 13B (TNFSF 13B) HOMOLOGUE FROM RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Wiens, G.D., Palti, Y., Rexroad III, C.E., Welch, T.J. 2003. Molecular characterization of a putative tumor necrosis factor superfamily 13b (tnfsf 13b) homologue from rainbow trout (oncorhynchus mykiss). Immunology Research Workshop. p.35.

DEVELOPMENT OF GENETIC MARKERS FOR STRIPED BASS (MORONE SAXITILIS) AND RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Abstract)

Rexroad III, C.E. 2003. Development of genetic markers for striped bass (morone saxitilis) and rainbow trout (oncorhynchus mykiss). Genetics in Aquaculture Symp. VII. Nov 9-15, 2003. p.8.

RAPID DEVELOPMENT OF GENE-TAGGED MICROSATELLITE MARKERS FROM BAC CLONES OF CHANNEL CATFISH, ICTALURUS PUNCTATUS, AND RAINBOW TROUT, ONCORHYNCHUS MYKISS - (Abstract)

Waldbieser, G.C., Karsi, A., Gahr, S.A., Rexroad III, C.E. 2003. Rapid development of gene-tagged microsatellite markers from bac clones of channel catfish, ictalurus punctatus, and rainbow trout, oncorhynchus mykiss. Genetics in Aquaculture Symp. VII. Nov 9-15, 2003. p.22.

DEVELOPMENT OF MICROARRAYS FOR TRANSCRIPTOME RESEARCH IN RAINBOW TROUT - (Abstract)

Rexroad III, C.E., Keele, J.W. 2003. Development of microarrays for transcriptome research in rainbow trout. VI Inter Congress of Comparative Physiology & Biochemistry. Feb 2-7, 2003. Vol 134. Supl 1. Abstract 8.2. p.S29.

DEVELOPMENT OF MOLECULAR TOOLS FOR GENOME RESEARCH IN RAINBOW TROUT - (Abstract)

Rexroad III, C.E. 2003. Development of molecular tools for genome research in rainbow trout. Plant and Animal Genome Abstracts. Abstract W18B. p.8.

UTILIZATION AND CHARACTERIZATION OF THE NCCCWA RAINBOW TROUT BAC LIBRARY FOR PHYSICAL AND LINKAGE MAPPING - (Abstract)

Palti, Y., Rexroad Iii, C.E., Gahr, S.A. 2003. Utilization and characterization of the ncccwa rainbow trout bac library for physical and linkage mapping. Plant and Animal Genome XI. p.241.

SEQUENCE ANALYSIS AND UTILIZATION OF RAINBOW TROUT EXPRESSED SEQUENCE TAGS (EST'S) - (Abstract)

Gahr, S.A., Keele, J.W., Palti, Y., Rexroad III, C.E. 2003. Sequence analysis and utilization of rainbow trout expressed sequence tags (est's). Plant and Animal Genome Abstracts. Abstract P667. p.241.

IDENTIFICATION AND MAPPING OF MICROSATELLITES IN RAINBOW TROUT EST SEQUENCES - (Abstract)

Rexroad III, C.E., Keele, J.W., Hostuttler, M.A., Palti, Y. 2003. Identification and mapping of microsatellites in rainbow trout est sequences. Plant and Animal Genome XI Book of Abstracts. p.242.

GENETIC VARIATION MEASURED BY MICROSATELLITES AMONG THREE STRAINS OF DOMESTICATED RAINBOW TROUT - (Peer Reviewed Journal)

Silverstein, J., Rexroad III, C.E., King, T. 2004. Genetic variation measured by microsatellites among three strains of domesticated rainbow trout. Aquaculture Research. 35:40-48.

CHARACTERIZATION OF GENETIC VARIATION IN THREE STRAINS OF RAINBOW TROUT USED TO INITIATE A SELECTIVE BREEDING PROGRAM FOR AQUACULTURE PRODUCTION EFFICIENCY - (Abstract)

Silverstein, J., Rexroad III, C.E. 2003. Characterization of genetic variation in three strains of rainbow trout used to initiate a selective breeding program for aquaculture production efficiency. Plant and Animal Genome 2003 Annual Meeting Book of Abstracts.

CHARACTERIZATION AND MAPPING OF NINETEEN POLYMORPHIC MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Palti, Y., Danzman, R.G., Rexroad Iii, C.E. 2003. Characterization and mapping of nineteen polymorphic microsatellite markers for rainbow trout (oncorhynchus mykiss). Animal Genetics. 34(2):153-156.

REVIEW: STATUS AND OPPORTUNITIES FOR GENOMIC RESEARCH WITH RAINBOW TROUT - (Review Article)

Rexroad III, C.E., Palti, Y., Thorgaard, G.H. 2002. Review: status and opportunities for genomic research with rainbow trout. Comparative Biochemistry and Physiology. 133(4):609-646.

CHARACTERIZATION OF THIRTY EIGHT POLYMORPHIC MICROSATELLITE MARKERS FOR RAINBOW TROUT (ONCORHYNCHUS MYKISS) - (Peer Reviewed Journal)

Palti, Y., Fincham, M.R., Rexroad Iii, C.E. 2002. Characterization of thirty eight polymorphic microsatellite markers for rainbow trout (oncorhynchus mykiss). Molecular Ecology Notes. 2(4):449-452.

STATUS AND OPPORTUNITIES FOR GENOMICS RESEARCH WITH RAINBOW TROUT - (Peer Reviewed Journal)

Overturf, K.E., Rexroad Iii, C.E., Palti, Y., Thorgaard, Buhler, Bailey, Williams, Kaattari, Hansen, Hardy 2002. Status and opportunities for genomics research with rainbow trout. Comparative Biochemistry and Physiology. Bol 133, Issue 4 p. 609-646.

MOLECULAR CHARACTERIZATION OF LYSOZYME TYPE II GENE IN RAINBOW TROUT. - (Peer Reviewed Journal)

Mitra, A., Foster-Frey, J. A., Wells,K. D., Rexroad,C. E. III, Wells,K. D. and Wall,R. J. (2003) Molecular Characterization lysozyme type II gene in rainbow trout (Oncorhynchus mykiss): Evidence of Gene Duplication. Animal Biotechnology 14:7-12.

COMBINING GENETICS AND GENOMICS FOR ENHANCING COOL AND COLDWATER AQUACULTURE PRODUCTION - (Proceedings/Symposium)

Rexroad III, C.E., Silverstein, J. 2002. Combining genetics and genomics for enhancing cool and coldwater aquaculture production. Proceedings of the International Conference on Recirculating Aquaculture. July 17-21, 2002. Book of Abstracts. p. 133-142