Projects

Resource Development Facilitating Bovine Genome Sequence Use to Improve Cattle Production Efficiency, Product Quality & Environmental Impact Appropriated (D)   Accession Number: 412268

Bovine Microrna Transcriptome Analyses: Discovery, Tissue-Specific Expression Profile, and Target Gene Prediction Reimbursable (R)   Accession Number: 412262

A Single Nucleotide Polymorphism (Snp) Marker Set for Dna-Based Traceback in North American Beef and Dairy Cattle Specific Cooperative Agreement (S)   Accession Number: 409004

Development of a Genotyping Platform to Enhance the Discovery of DNA Markers for Feed Efficiency Specific Cooperative Agreement (S)   Accession Number: 412204

Gene Expression Response of Salmonella to Multiple Hurdle Carcass Processing Interventions Trust (T)   Accession Number: 416654

Publications

Phylogenetic classification of Escherichia coli O157:H7 isolates of human and bovine origin using a novel set of nucleotide polymorphisms - (Abstract) - (20-Feb-09)

Bacterial communities associated with Shiga-toxigenic E. coli O157:H7 (STEC O157) in beef cattle feedlot environments - (Abstract) - (17-Feb-09)

Snp Discovery in Swine by Reduced Representation and High Throughput Pyrosequencing - (Abstract)

Nonneman, D.J., Wiedmann, R.T., Smith, T.P. 2009. SNP Discovery in Swine by Reduced Representation and High Throughput Pyrosequencing. Plant and Animal Genome Conference XVII Proceedings. 1/10-14/2009, San Diego, CA. Abstract P531.

Design of the Illumina Porcine 50K+ SNP Iselect(TM) Beadchip and Characterization of the Porcine HapMap Population - (Abstract)

Groenen, M.A., Crooijmans, R.P., Ramos, A.M., Amaral, A.J., Kerstens, H., Bendixen, C., Hedegaard, J., Rohrer, G.A., Smith, T.P., Van Tassell, C.P., Taylor, J.F., Rothschild, M., Hu, Z., Nonneman, D.J., Beever, J., Archibald, A., Law, A., Milan, D., Hansen, M., Schook, L. 2009. Design of the Illumina Porcine 50K+ SNP Iselect(TM) Beadchip and Characterization of the Porcine HapMap Population. Plant and Animal Genome Conference Proceedings. 1/10-14/09, San Diego, CA. Abstract W493.

The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals - (Peer Reviewed Journal)

Larue, R.S., Jonsson, S.R., Silverstein, K.A., Lajoie, M., Bertrand, D., El-Mabrouk, N., Hotzel, I., Andresdottir, V., Smith, T.P., Harris, R. 2008. The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals. BioMed Central (BMC) Molecular Biology. 9:104.

SNP discovery in swine by reduced representation and high throughput pyrosequencing - (Peer Reviewed Journal)

Wiedmann, R.T., Smith, T.P., Nonneman, D.J. 2008. SNP discovery in swine by reduced representation and high throughput pyrosequencing. BioMed Central (BMC) Genetics. 9:81.

Association of single nucleotide polymorphisms in candidate genes residing under quantitative trait loci in beef cattle - (Abstract)

Casas, E., Wheeler, T.L., Shackelford, S.D., Bennett, G.L., Smith, T.P.L. 2009. Association of single nucleotide polymorphisms in candidate genes residing under quantitative trait loci in beef cattle [abstract]. Plant and Animal Genome XVII Conference Proceedings. Poster No. P477.

Extreme muscle development in sheep heterozygous for both myostatin and callipyge mutations - (Abstract)

Smith, T.P., Freking, B.A., Shackelford, S.D., King, D.A., Wheeler, T.L., Leymaster, K.A. 2009. Extreme muscle development in sheep heterozygous for both myostatin and callipyge mutations. Plant and Animal Genome Conference Proceedings. Jan. 10-14, 2009. San Diego, CA. Abstract W084.

Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries - (Abstract)

Castano, C., Smith, T.P., Wiedmann, R.T., Yao, J., Rexroad III, C.E. 2009. Single nucleotide polymorphism discovery in rainbow trout using reduced representation libraries. Meeting Abstract.

MicroRNA expression profile in bovine cumulus-oocyte complexes during late oogenesis - (Abstract)

Miles, J.R., McDaneld, T.G., Wiedmann, R.T., Cushman, R.A., Echternkamp, S.E., Vallet, J.L., Smith, T.P.L. 2009. MicroRNA expression profile in bovine cumulus-oocyte complexes during late oogenesis [abstract]. Reproduction, Fertility and Development. 21(1):186 (Abstract #174).

Prevalence of the prion gene E211K variant in U.S. cattle - (Peer Reviewed Journal)

Heaton, M.P., Keele, J.W., Harhay, G.P., Richt, J., Koohmaraie, M., Wheeler, T.L., Shackelford, S.D., Casas, E., King, D.A., Sonstegard, T.S., Van Tassell, C.P., Neibergs, H.L., Chase, C.C., Kalbfleisch, T.S., Smith, T.P., Clawson, M.L., Laegreid, W.W. 2008. Prevalence of the prion gene E211K variant in U.S. cattle. BioMed Central (BMC) Veterinary Research [journal online]. 4:25. Available: (http://www.biomedcentral.com/1746-6148/4/25).

A sequencing strategy for identifying variation throughout the prion gene of BSE-affected cattle - (Peer Reviewed Journal)

Clawson, M.L., Heaton, M.P., Keele, J.W., Smith, T.P., Harhay, G.P., Richt, J., Laegreid, W.W. 2008. A sequencing strategy for identifying variation throughout the prion gene of BSE-affected cattle. BMC Research Notes [journal online]. 1:32. Available: http://www.biomedcentral.com/1756-0500/1/32.

MicroRNA profiles of the fetal pig during skeletal muscle development - (Abstract)

McDaneld, T.G., Wiedmann, R.T., Miles, J.R., Smith, T.P. 2008. MicroRNA profiles in skeletal muscle of fetal pig. XXXI Animal Genetics International Conference Proceedings. Poster #2206.

Present and future applications of DNA technologies to improve beef production - (Literature)

Allan, M.F., Smith, T.P. 2008. Present and future applications of DNA technologies to improve beef production. Meat Science. 80(1):79-85.

High throughput SNP discovery and validation in the pig: towards the development of a high density swine SNP chip - (Abstract)

Ramos, A.M., Crooijmans, R.P., Fonseca, A., Kerstens, H., Bendixen, C., Hedegaard, J., Rohrer, G.A., Smith, T.P., Van Tassell, C.P., Taylor, J.F., Rothschild, M., Nonneman, D.J., Beever, J., Archibald, A., Schook, L., Groenen, M.A. 2008. High throughput SNP discovery and validation in the pig: towards the development of a high density swine SNP chip. Proc., 2nd European Conference on Pig Genomics, June 4-5, 2008, Ljubljana, Slovenia. Poster #2234.

Markers on bovine chromosome 20 associated with fat related traits and incidence of contracting bovine respiratory disease - (Abstract)

Garcia, M.D., Matukumalli, L., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., Smith, T.P., Casas, E. 2008. Markers on bovine chromosome 20 associated with fat related traits and incidence of contracting bovine respiratory disease [abstract]. Journal of Animal Science Supplement. 86(E-Suppl. 2):210. Abstract #W54.

analysis of Cattle Copy Number Variation Reveals Insights into the Evolution of Ruminants - (Abstract)

Liu, G., Keele, J.W., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. analysis of cattle copy number variation reveals insights into the evolution of ruminants. 2008 meeting on the Biology of Genomes, May 6-10, 2007, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. p197.

Development and Applications of a Bovine 50,000 SNP Chip - (Abstract)

Taylor, J.F., Sonstegard, T.S., Van Tassell, C.P., Matukumalli, L., Smith, T.P., Allen, M.L. 2008. Development and Applications of a Bovine 50,000 SNP Chip. International Symposium of Animal Functional Genomics.

Microbial Community Structure of Feedlot Cattle Feces - (Abstract)

Durso, L.M., Harhay, G.P., Clawson, M.L., Laegreid, W.W., Bono, J.L., Keen, J.E., Smith, T.P. Microbial community structure of feedlot cattle feces. In: Proceedings of the 108th General Meeting of the American Society for Microbiology, June 1-5, 2008, Boston, Massachusetts. 2008 CDROM.

Effect of porcine reproductive and respiratory syndrome virus on porcine alveolar macrophage function as determined using serial analysis of gene expression (SAGE) - (Peer Reviewed Journal)

Miller, L.C., Harhay, G.P., Lager, K.M., Smith, T.P., Neill, J.D. 2008. Effect of porcine reproductive and respiratory syndrome virus on porcine alveolar macrophage function as determined using serial analysis of gene expression (SAGE). Developments in Biologicals. 132:169-174.

Association of a bovine prion gene haplotype with atypical BSE - (Peer Reviewed Journal)

Clawson, M.L., Richt, J., Baron, T., Biacabe, A., Czub, S., Heaton, M.P., Smith, T.P., Laegreid, W.W. 2008. Association of a bovine prion gene haplotype with atypical BSE. PLoS One [serial online]. 3(3):e1830. Available: http://www.plosone.org.

A high-resolution map of copy number variation in the cattle genome - (Abstract)

Liu, G., Keele, J.W., Van Tassell, C.P., Sonstegard, T.S., Alexander, L.J., Li, R.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. A high-resolution map of copy number variation in the cattle genome. Plant and Animal Genome VX Conference Abstracts. The NRI Animal Genome PD Meeting, San Diego, CA. p84.

Analysis of copy number variation in the bovine genome - (Abstract)

Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Brown, T., Smith, T.P., Gasbarre, L.C. 2008. Analysis of copy number variation in the bovine genome. Plant and Animal Genome (PAG) XVI Conference. San Diego, CA. p517.

Characterization of the Cattle HapMap Population using the Illumina Bovine-50K SNP Chip - (Abstract)

Matukumalli, L.K., Schnabel, R.D., Lawley, C.T., Sonstegard, T.S., Smith, T.P., Moore, S.S., Taylor, J.F., Van Tassell, C.P. 2008. Characterization of the Cattle HapMap Population using the Illumina Bovine-50K SNP Chip. Plant and Animal Genome Conference.

MicroRNA (MiRNA) technology in livestock: expression profiling of bovine oocyte and developmental stages of porcine skeletal muscle - (Proceedings/Symposium)

Mcdaneld, T.G., Wiedmann, R.T., Miles, J.R., Cushman, R.A., Vallet, J.L., Smith, T.P. 2007. MicroRNA (MiRNA) technology in livestock: expression profiling of bovine oocyte and developmental stages of porcine skeletal muscle. Conference Proc., National Swine Improvement Federation Conference & Ann. Mtg., Dec. 5-7, 2007. Kansas City, MO, NSIF Volume 32, www.nsif.com.

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries - (Peer Reviewed Journal)

Van Tassell, C.P., Smith, T.P., Matukumalli, L.K., Taylor, J.F., Schnabel, R.D., Lawley, C.T., Haudenschild, C., Moore, S.S., Warren, W.C., Sonstegard, T.S. 2008. SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods. 5:247-252.

Gene Expression Profiling of Porcine Reproductive and Respiratory Syndrome Virus Infected Porcine Alveolar Macrophages - (Abstract)

Miller, L.C., Harhay, G.P., Lager, K.M., Smith, T.P., Neill, J.D. 2007. Gene expression profiling of PRRSV-infected porcine alveolar macrophages [abstract]. Porcine Reproductive and Respiratory Syndrome International Symposium. Paper No. 47.

Detection of germline and somatic copy number variations in cattle - (Proceedings/Symposium)

Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2008. Detection of germline and somatic copy number variations in cattle. Developments in Biologicals. 132:231-237.

Prevalence of the prion gene E211K variant in U.S. cattle - (Abstract)

Heaton, M.P., Keele, J.W., Harhay, G.P., Richt, J., Koohmaraie, M., Wheeler, T.L., Shackelford, S.D., Casas, E., King, D.A., Sonstegard, T.S., Van Tassell, C.P., Neibergs, H.L., Chase, C.C., Kalbfleisch, T.S., Smith, T.P., Clawson, M.L., Laegreid, W.W. 2008. Prevalence of the prion gene E211K variant in U.S. cattle (abstract). Plant and Animal Genome XVI Conference. Poster No. P538.

Generation of large numbers of SNP in cattle by coupling reduced genome representation with high throughput sequencing - (Abstract)

Smith, T.P., Matukumalli, L., Sonstegard, T.S., Schnabel, R., Taylor, J., Haudenschild, C., Lawley, C., Moore, S., Van Tassell, C.P. 2008. Generation of large numbers of SNP in cattle by coupling reduced genome representation with high throughput sequencing (abstract). Plant and Animal Genome XVI Conference Proceedings. Poster No. P90.

Description and analysis of the Bovine Gene Atlas - An extensive compendium of bovine transcript profiles - (Abstract)

Harhay, G.P., Keele, J.W., Smith, T.P., Alexander, L.J., Matukumalli, L.K., Schroeder, S.G., Liu, G., Van Tassell, C.P., Sonstegard, T.S. 2008. Description and analysis of the Bovine Gene Atlas - An extensive compendium of bovine transcript profiles (abstract). Plant and Animal Genome XVI Conference. Poster No. P516.

Bovine copy number variation and its implication in animal health - (Abstract)

Liu, G., Van Tassell, C.P., Sonstegard, T.S., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2007. Bovine copy number variation and its implication in animal health. [ abstract]. International Symposium on Animal Genomics for Animal Health. pp. 32.

A physical map of the bovine genome - (Peer Reviewed Journal)

Snelling, W.M., Chiu, R., Schein, J.E., Hobbs, M., Abbey, C.A., Adelson, D.L., Aerts, J., Bennett, G.L., Bosdet, I.E., Boussaha, M., Brauning, R., Caetano, A.R., Costa, M.M., Crawford, A.M., Dalrymple, B.P., Eggen, A., Everts-Van Der Wind, A., Floriot, S., Gautier, M., Gill, C.A., Green, R.D., Holt, R., Jann, O., Jones, S.J., Kappes, S.M., Keele, J.W., De Jong, P.J., Larkin, D.M., Lewin, H.A., Mcewan, J.C., Mckay, S., Marra, M.A., Mathewson, C.A., Matukumalli, L.K., Moore, S.S., Murdoch, B., Nicholas, F.W., Osoegawa, K., Roy, A., Salih, H., Schibler, L., Schnabel, R.D., Silveri, L., Skow, L.C., Smith, T.P., Sonstegard, T.S., Taylor, J.F., Tellam, R., Van Tassell, C.P., Williams, J.L., Womack, J.E., Wye, N.H., Yang, G., Zhao, S. 2007. A physical map of the bovine genome. Genome Biology. 8:R165 (17 pp).

Assessing the association of single nucleotide polymorphisms at the thyroglobulin gene with carcass traits in beef cattle - (Peer Reviewed Journal)

Casas, E., White, S.N., Shackelford, S.D., Wheeler, T.L., Koohmaraie, M., Bennett, G.L., Smith, T.P.L. 2007. Assessing the association of single nucleotide polymorphisms at the thyroglobulin gene with carcass traits in beef cattle. Journal of Animal Science. 85:2807-2814.

Initial analysis of copy number variation in the cow genome - (Abstract)

Liu, G., Van Tassell, C.P., Sonstegard, T.S., Li, R.W., Alexander, L.J., Keele, J.W., Matukumalli, L.K., Smith, T.P., Gasbarre, L.C. 2007. Initial analysis of copy number variation in the cow genome. [abstract}. Gordon Research Conference Proceedings.

The u-Calpain and Calpastatin Tenderness Markers are Predictive of Tenderness Variation Among Samples Obtained From Commercial U.S. Select Beef Carcasses - (Abstract)

Shackelford, S.D., Casas, E., Smith, T.P., Wheeler, T.L., Koohmaraie, M. 2007. The u-calpain and calpastatin tenderness markers are predictive of tenderness variation among samples obtained from commercial U.S. select beef carcasses. Proc. 60th Reciprocal Meat Conference, June 17-20, 2007, Brookings, SD. http://www.meatscience.org/pubs/rmcarchv/2007/presentations/RMC_2007_060_4_073_Shackelford.pdf

The role of microRNAs in muscle development - (Abstract)

Smith, T.P.L., McDaneld, T.G., Doumit, M.E., Matukumalli, L.K., Sonstegard, T.S., Coutinho, L.L., Wiedmann, R.T. The role of microRNAs in muscle development. Journal of Animal Science (Suppl. 1):637. 2007

Construction and application of a bovine high-density SNP assay - (Abstract)

Van Tassell, C.P., Matukumalli, L.K., Taylor, C., Smith, T.P., Sonstegard, T.S., Schnabel, R., Silva, M.V., Wiggans, G.R., Liu, G., Moore, S., Taylor, J.F. 2007. Construction and application of a bovine high-density SNP assay. Joint Abstracts of the American Dairy Science and Society of Animal Science.

Creation of a Gene Atlas in cattle using sequence-based transcriptional profiling - (Abstract)

Sonstegard, T.S., Keele, J.W., Harhay, G.P., Smith, T.P., Matukumalli, L.K., Van Tassell, C.P., Liu, G., Alexander, L.J. 2007. Creation of a Gene Atlas in cattle using sequence-based transcriptional profiling. [abstract] Joint Abstracts of the American Dairy Science and Society of Animal Science.

Discovery and Profiling of Bovine Micrornas from Immune Related and Embryonic Tissues - (Peer Reviewed Journal)

Coutinho, L.L., Matukumalli, L.K., Sonstegard, T.S., Van Tassell, C.P., Gasbarre, L.C., Capuco, A.V., Smith, T.P. 2007. Discovery and profiling of bovine micrornas from immune related and embryonic tissues. Physiological Genomics. 29(1):35-43.

A second generation radiation hybrid map to aid the assembly of the bovine genome sequence - (Peer Reviewed Journal)

Jann, O.C., Aerts, J., Jones, M., Hastings, N., Law, A., Mckay, S., Marques, E., Prasad, A., Yu, J., Moore, S.S., Florita, S., Mahe, M., Eggen, A., Silveri, L., Negrini, R., Milanesi, E., Ajmone-Marsan, P., Vakebtubu, A., Marchitelli, C., Janitz, M., Herwig, R., Hennig, S., Savarese, M., Gorni, C., Connor, E.E., Sonstegard, T.S., Smith, T.P., Drogemuller, C., Williams, J. 2006. A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. BMC Genomics. 7:283-298.

Prion gene haplotypes of U.S. cattle - (Peer Reviewed Journal)

Clawson, M.L., Heaton, M.P., Keele, J.W., Smith, T.P., Harhay, G.P., Laegreid, W.W. 2006. Prion gene haplotypes of U.S. cattle. BioMed Central (BMC) Genetics. 7:51.

Genome adaptations of a tripartite motif protein for retroviral defense in cattle and sheep - (Abstract)

Smith, T.P., Heaton, M.P., Snelling, W.M., Ylinen, L., Keckesova, Z., Webb, B.L., Towers, G.J. 2007. Genome adaptations of a tripartite motif protein for retroviral defense in cattle and sheep [abstract]. Plant and Animal Genome XV Conference. Poster No. P540.

Polymorphisms and haplotype structure of bovine PRND (doppel) and PRNT - (Abstract)

Laegreid, W.W., Clawson, M.L., Smith, T.P., Harhay, G.P., Keele, J.W., Heaton, M.P. 2007. Polymorphisms and haplotype structure of bovine PRND (doppel) and PRNT [abstract]. Plant and Animal Genome XV Conference. Poster No. P535.

A marker set for parentage-based DNA traceback in beef and dairy cattle - (Abstract)

Heaton, M.P., Snelling, W.M., Smith, T.P., Keele, J.W., Harhay, G.P., Wiedmann, R.T., Bennett, G.L., Freking, B.A., Van Tassell, C.P., Sonstegard, T.S., Gasbarre, L.C., Moore, S.S., Murdoch, B., Mckay, S.D., Kalbfleisch, T., Laegreid, W.W. 2007. A marker set for parentage-based DNA traceback in beef and dairy cattle [abstract]. Plant and Animal Genome XV Conference. Poster No. P516.

A rapid sequence-based method for comprehensive polymorphism identification within a 25.2-kb region of the bovine prion gene in BSE-affected cattle - (Abstract)

Clawson, M.L., Heaton, M.P., Keele, J.W., Smith, T.P., Harhay, G.P., Laegreid, W.W. 2007. A rapid sequence-based method for comprehensive polymorphism identification within a 25.2-kb region of the bovine prion gene in BSE-affected cattle [abstract]. Plant and Animal Genome XV Conference. Poster No. P533.

Association of a Single Nucleotide Polymorphism in Spp1 with Growth Traits and Twinning in a Cattle Population Selected for Twinning Rate - (Peer Reviewed Journal)

Allan, M.F., Thallman, R.M., Cushman, R.A., Echternkamp, S.E., White, S.N., Kuehn, L.A., Casas, E., Smith, T.P. 2007. Association of a single nucleotide polymorphism in spp1 with growth traits and twinning in a cattle population selected for twinning rate. Journal of Animal Science. 85(2):341-347.

Evaluation in beef cattle of six deoxyribonucleic acid markers developed for dairy traits reveals an osteopontin polymorphism associated with postweaning growth. - (Peer Reviewed Journal)

White, S.N., Casas, E., Allan, M.F., Keele, J.W., Snelling, W.M., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., Smith, T.P. 2007. Evaluation in beef cattle of six deoxyribonucleic acid markers developed for dairy traits reveals an osteopontin polymorphism associated with post-weaning growth. Journal of Animal Science. 85:1-10.

Isolation of An Active Lv1 Gene from Cattle Indicates That Tripartite Motif Protein-Mediated Innate Immunity to Retroviral Infection Is Widespread among Mammals - (Peer Reviewed Journal)

Ylinen, L.M., Keckesova, Z., Webb, B.L., Gifford, R.J., Smith, T.P., Towers, G.J. 2006. Isolation of an active Lv1 gene from cattle indicates that tripartite motif protein-mediated innate immunity to retroviral infection is widespread among mammals. Journal of Virology. 80(15):7332-7338.

Expression Profiles of Micro-Rnas in Swine Muscle Development - (Abstract)

Wiedmann, R.T., Doumit, M.E., Matukumalli, L.K., Sonstegard, T.S., Coutinho, L.L., Nonneman, D.J., Smith, T.P. 2006. Expression profiles of micro-RNAs in swine muscle development. (Abstract) International Conference on Animal Genetics. p. 70. Abstract #C278.

Isolation of the First Non-Primate Trim5-Alpha from Cattle Indicates That Trim5-Alpha Mediated Innate Immunity to Retroviral Infection May Be Widespread among Mammals - (Abstract)

Schaller, T., Ylinen, L.M., Keckesova, Z., Webb, B.L., Smith, T.P., Towers, G.J. 2006. Isolation of the first non-primate trim5-alpha from cattle indicates that trim5-alpha mediated innate immunity to retroviral infection may be widespread among mammals. Proc., 31st Annual Meeting on Retroviruses, Cold Spring Harbor Lab, Cold Spring Harbor, NY, May 23-28, 2006.

Comprehensive Search of Bovine Micrornas Expressed in Immune and Gut Tissues by Deep Sequencing - (Abstract)

Sonstegard, T.S., Matukumalli, L.K., Coutinho, L.L., Liu, G., Gasbarre, L.C., Smith, T.P. 2006. Comprehensive search of bovine micrornas expressed in immune and gut tissues by deep sequencing [abstract]. International Conference on Animal Genetics. pp. C354.

Profiling of Bovine Micrornas from Immune Related and Embryonic Tissues. - (Abstract)

Matukumalli, L.K., Coutinho, L.L., Sonstegard, T.S., Van Tassell, C.P., Gasbarre, L.C., Capuco, A.V., Smith, T.P. 2006. Profiling of bovine micrornas from immune related and embryonic tissues [abstract]. International Conference on Animal Genetics. pp. C329.

Identification of Bovine Micrornas - (Abstract)

Matukumalli, L.K., Coutinho, L.L., Sonstegard, T.S., Van Tassell, C.P., Gasbarre, L.C., Capuco, A.V., Smith, T.P. 2006. Identification of bovine micrornas [abstract]. Cold Springs Harbor Laboratories 71 Symposium of Regulatoary RNAs. Cold Spring Harbor, NY. Number 214.

Characterization of Boivne Micrornas Expressed in Immune and Gut Tissues by Deep Sequencing - (Abstract)

Matukumalli, L.K., Coutinho, L.L., Sonstegard, T.S., Liu, G., Gasbarre, L.C., Smith, T.P. 2006. Characterization of boivne micrornas expressed in immune and gut tissues by deep sequencing [abstract] 17th Annual BARC Poster Day. Beltsville, MD. No 27.

Identification and Profiling of Bovine Micrornas from Immune Related and Embryonic Tissues. - (Abstract)

Coutinho, L.L., Matukumalli, L.K., Sonstegard, T.S., Van Tassell, C.P., Gasbarre, L.C., Capuco, A.V., Smith, T.P. 2006. Identification and profiling of bovine micrornas from immune related and embryonic tissues [abstract]. 17th Annual BARC Poster Day, Beltsville, MD. No 6.

Characterization of 954 Bovine Full-Cds Cdna Sequences - (Peer Reviewed Journal)

Harhay, G.P., Sonstegard, T.S., Keele, J.W., Heaton, M.P., Clawson, M.L., Snelling, W.M., Wiedmann, R.T., Van Tassell, C.P., Smith, T.P. 2005. Characterization of 954 bovine full-CDS cDNA sequences. Biomed Central (BMC) Genomics 6:166 (11 pp).

Callipyge Mutation Affects Gene Expression in Cis: a Potential Role for Chromatin Structure - (Peer Reviewed Journal)

Murphy, S.K., Nolan, C.M., Huang, Z., Kucera, K.S., Freking, B.A., Smith, T.P.L., Leymaster, K.A., Weidman, J.R., Jirtle, R.L. 2006. Callipyge mutation affects gene expression in cis: A potential role for chromatin structure. Genome Research. 16:340-346.

High Density Ests Based Bovine Physical Maps and Their Use to Construct Comparative Maps and Inform the Bovine Genome Sequence Assembly - (Abstract)

Williams, J.L., Aerts, J., Law, A., Jann, O., Janitz, M., Hennig, S., Eggen, A., Floriot, S., Ajmone-Marsan, P., Milanse, E., Valentini, A., Marchitelli, C., Mckay, S., Prasad, A., Yu, J., Moore, S.S., Drogemuller, C., Connor, E.E., Sonstegard, T.S., Stone, R.T., Smith, T.P. 2006. High density ESTs based bovine physical maps and their use to construct comparative maps and inform the bovine genome sequence assembly[abstracat]. Plant and Animal Genome XIV:55. Number W214.

Linkage Disequilibrium and Haplotype Structure in the Prion Gene of U.S. Beef and Dairy Cattle - (Abstract)

Clawson, M.L., Heaton, M.P., Keele, J.W., Smith, T.P., Laegreid, W.W. 2006. Linkage disequilibrium and haplotype structure in the prion gene of U.S. beef and dairy cattle (abstract). Plant and Animal Genome Conference Proceedings. p. 145.

Testing for Interactions Between Calpastatin and U-Calpain Markers in Beef Cattle on Tenderness Traits - (Peer Reviewed Journal)

Casas, E., White, S.N., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., Riley, D.G., Chase, C.C. Jr., Johnson, D.D., Smith, T.P. 2006. Effects of calpastatin and u-calpain markers in beef cattle on tenderness traits. Journal of Animal Science. 84:520-525.

Testing for Interactions Between Calpastatin and U-Calpain Markers in Beef Cattle on Tenderness Traits - (Abstract)

Casas, E., White, S.N., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., Riley, D.G., Chase, C.C., Johnson, D.D., Smith, T.P. 2006. Testing for interactions between Calpastatin and u-Calpain markers in beef cattle on tenderness traits [abstract]. Midwestern Section of the American Society of Animal Science. 84(Suppl. 2):135. Paper No. 329.

Two Promoters Coordinate Transcription from the Human Lhx3 Gene: Regulation by Nuclear Factor I and Sp1 - (Peer Reviewed Journal)

Yaden, B.C., Garcia Iii, M., Smith, T.P., Rhodes, S.J. Two Promoters Mediate Transcription from the Human LHX3 gene: Regulation by Nuclear Factor 1 and Specificity Protein 1. Endocrinology 147:324-337. 2006.

Assignment of 12 Genes to Porcine Chromosome 1q by Linkage and Radiation Hybrid Mapping - (Peer Reviewed Journal)

Nonneman, D.J., Smith, T.P., Freking, B.A., Rohrer, G.A. 2005. Assignment of 12 genes to porcine chromosome 1q by linkage and radiation hybrid mapping. Anim. Genet. 36:532-533. 2005.

Identification of Genetic Markers for Fat Deposition and Meat Tenderness on Bovine Chromosome 5: Development of a Low Density Snp Map - (Peer Reviewed Journal)

Stone, R.T., Casas, E., Smith, T.P.L., Keele, J.W., Harhay, G.P., Bennett, G.L., Koohmaraie, M., Wheeler, T.L., Shackelford, S.D., Snelling, W.M. 2005. Identification of genetic markers for fat deposition and meat tenderness on bovine chromosome 5: Development of a low-density single nucleotide polymorphism map. Journal of Animal Science. 83:2280-2288.

A New Snp in Capn1 Extends the Current Tenderness Marker Test to Include Cattle of Bos Indicus, Bos Taurus, and Crossbred Descent - (Peer Reviewed Journal)

White, S.N., Casas, E., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., Riley, D.G., Chase, C.C., Johnson, D.D., Keele, J.W., Smith, T.P. 2005. A new snp in capn1 extends the current tenderness marker test to include cattle of bos indicus, bos taurus, and crossbred descent. Journal of Animal Science. 83:2001-2008.

Linkage Mapping Bovine Est-Based Snp - (Peer Reviewed Journal)

Snelling, W.M., Casas, E., Stone, R.T., Keele, J.W., Harhay, G.P., Bennett, G.L., Smith, T.P. 2005. Linkage mapping bovine EST-based SNP. Biomed Central (BMC) Genomics 6:74.

Ut-B Is Expressed in Bovine Rumen: Potential Role in Ruminal Urea Transport - (Peer Reviewed Journal)

Stewart, G.S., Grahman, C., Cattell, S., Smith, T.P., Simmons, N.L., Smith, C.P. 2005. UT-B is expressed in bovine rumen: potential role in ruminal urea transport. American Journal of Physiology. 289:605-612.

Immunogenomics and the Transition Dairy Cow: Physiological Insights and Future Possibilities for Improving Animal Health. - (Abstract)

Burton, J.L., Madsen, S.A., Chang, L.C., Weber, P.S., Coussens, P.M., Rosa, G., Matukumalli, L.K., Sonstegard, T.S., Smith, T.P. 2005. Immunogenomics and the transition dairy cow: physiological insights and future possibilities for improving animal health. ADSA/ASAS Joint Meeting, Cincinnati, OH, Abstract 17

Abnormal Postnatal Maintenance of Elevated Prenatal Dlk1 Levels in Callipyge Sheep - (Peer Reviewed Journal)

Murphy, S.K., Freking, B.A., Smith, T.P., Nolan, C.M., Wylie, A.A., Evans, H.K., Jirtle, R.L. 2005. Abnormal postnatal maintenance of elevated prenatal DLK1 levels in callipyge sheep. Mammalian Genome. 16:171-183.

Alignment Genomes Across Species - (Abstract)

Williams, J.L., Hastings, N., Jann, O., Law, A., Stone, R.T., Snelling, W.M., Connor, E.E., Sonstegard, T.S., Smith, T.P. 2005. Alignment genomes across species [abstract]. Plant and Animal Genome XVII. p. 241.

A New Snp Marker in Capn1 Is Associated with Tenderness in Cattle of Indicine, Taurine, and Admixed Descent - (Abstract)

White, S.N., Casas, E., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., Riley, D.G., Chase, C.C., Johnson, D.D., Keele, J.W., Smith, T.P. 2005. A new snp marker in capn1 is associated with tenderness in cattle of indicine, taurine, and admixed descent. Proc., Plant & Animal Genome XIII, San Diego, CA. P528. p. 203. 2005.

Assessment of Single Nucleotide Polymorphisms in Genes Residing on Chromosomes 14 and 29 for Association with Carcass Composition Traits in Bos Indicus Cattle - (Abstract)

Chase, C.C. Jr., Casas, E., White, S.N., Riley, D.G., Smith, T.P., Brenneman, R.A., Olson, T.A., Johnson, D.D., Coleman, S.W., Bennett, G.L. 2005. Assessment of single nucleotide polymorphisms in genes residing on chromosomes 14 and 29 for association with carcass composition traits in Bos indicus cattle [Abstract]. Plant and Animal Genome XIII, January 15-19, 2005, San Diego, CA. p. 203.

Integrating Linkage and Radiation Hybrid Mapping Data for Bovine Chromosome 15 - (Peer Reviewed Journal)

Snelling, W.M., Gautier, M., Keele, J.W., Smith, T.P., Stone, R.T., Harhay, G.P., Bennett, G.L., Ihara, N., Takasuga, A., Takeda, H., Sugimoto, Y., Eggen, A. Integrating linkage and radiation hybrid mapping data for bovine chromosome 15. Biomed Central (BMC) Genomics. 5:77. 2004.

Assessment of Single Nucleotide Polymorphisms in Genes Residing on Chromosomes 14 and 29 for Association with Carcass Composition Traits in Bos Indicus Cattle - (Peer Reviewed Journal)

Casas, E., White, S.N., Riley, D.G., Smith, T.P., Brenneman, R.A., Olson, T.A., Johnson, D.D., Coleman, S.W., Bennett, G.L., Chase, C.C. 2005. Assessment of single nucleotide polymorphisms in genes residing on chromosomes 14 and 29 for association with carcass composition traits in bos indicus cattle. Journal of Animal Science. 83:13-19.

Regulatory and Coding Sequences of the Pituitary-Specific Transcription Factor, Prop1 Are Evolutionarily and Functionally Conserved - (Abstract)

Camper, S.A., Ward, R.D., Cho, M., Raetzman, L.T., Esposito, C., Rubin, E.M., Smith, T.P., Rhodes, S.J., Lyons, R.H. Regulatory and coding sequences of the pituitary-specific transcription factor, PROP1 are evolutionarily and functionally conserved. Proc., 18th Int. Mouse Genome Conference, Seattle, WA, 10/18-21/2004. Abstract.

Association of Markers in the Bovine Capn1 Gene with Meat Tenderness in Large Crossbred Populations That Sample Influential Industry Sires - (Peer Reviewed Journal)

Page, B.T., Casas, E., Quaas, R.L., Thallman, R.M., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., White, S.N., Bennett, G.L., Keele, J.W., Dikeman, M.E., Smith, T.P. Association of markers in the bovine capn1 gene with meat tenderness in large crossbred populations that sample influential industry sires. Journal of Animal Science. 82:3474-3481. 2004.

The Application of Molecular Genetics in a Commercial Environment to Improve Production and Carcass Composition in Cattle - (Proceedings/Symposium)

Casas, E., Thallman, R.M., Smith, T.P. 2004. The application of molecular genetics in a commercial environment to improve production and carcass composition in cattle. Advances in Animal Biotechnology and Their Applications in the National Livestock Industry, Symposium & Compendium Series Proceedings. October 13-15, 2004, Villarica, Chile. 10:53-70.

Analysis of Linkage Disequilibrium in the Region Surrounding a Quantitative Trait Locus for Growth in Cattle - (Abstract)

Smith, T.P., Snelling, W.M., Casas, E. 2004. Analysis of linkage disequilibrium in the region surrounding a quantitative trait locus for growth in cattle. Proc., Genome Sequencing & Analysis Conference XVI, Washington, DC, Sept. 27-30, 2004. Abstract P-56. p. 46.

Database Directed Full-Length Cdna Generation Using Est Data from Normalized Bovine Cdna Libraries - (Abstract)

Harhay, G.P., Smith, T.P., Sonstegard, T.S., Clawson, M.L. 2004. Database directed full-length cDNA generation using EST data from normalized bovine cDNA libraries. Proc., 29th International Conference on Animal Genetics (ISAG), Tokyo, Japan. September 11-16, 2004. Abstract A022, p. 37.

Generation of a Bovine Oocyte Cdna Libarary and Microarray: Resources for Identification of Genes Important for Follicular Development and Early Embryogenesis - (Peer Reviewed Journal)

Yao, J., Ren, X., Ireland, J.J., Coussens, P.M., Smith, T.P., Smith, G.W. 2004. Generation of a bovine oocyte cDNA libarary and microarray: resources for identification of genes important for follicular development and early embryogenesis. Physiological Genomics. 19:84-92. 2004.

Database Directed Full-Length Cdna Generation from Normalized Bovine Cdna Libraries - (Abstract)

Harhay, G.P., Sonstegard, T.S., Clawson, M.L., Smith, T.P. 2004. Database directed full-length cDNA generation from normalized bovine cDNA libraries. International Genome Sequencing and Analysis Conference XVI, Washington, DC. September 27-30, 2004. Poster Abstract #49.

Association of Myostatin on Early Calf Mortality, Growth, and Carcass Composition Traits in Crossbred Cattle - (Peer Reviewed Journal)

Casas, E., Bennett, G.L., Smith, T.P., Cundiff, L.V. 2004. Association of myostatin on early calf mortality, growth, and carcass composition traits in crossbred cattle. Journal of Animal Science. 82:2913-1918.

Genetics: Molecular - (Other)

Nonneman, D.J., Smith, T.P. 2004. Genetics: Molecular. Encyclopedia of Animal Science. p. 466-468.

Meat Quality and the Callipyge Gene, Consumer Acceptance and Final Product - (Proceedings/Symposium)

Freking, B.A., Smith, T.P., Leymaster, K.A. 2004. Meat quality and the callipyge gene, consumer acceptance and final product. In: Proceedings of the 7th World Sheep and Wool Congress 2004, July 17-24, 2004, Quebec, Canada. p. 92-102.

Conserved Amino Acid Sequences Confer Nuclear Localization Upon the Prophet of Pit-1 Pituitary Transcription Factor Protein - (Peer Reviewed Journal)

Guy, J.C., Hunter, C.S., Showalter, A.A., Smith, T.P., Charoonpatrapong, K., Sloop, K.W., Bidwell, J.P., Rhodes, S.J. 2004. Conserved amino acid sequences confer nuclear localization upon the prophet of Pit-1 pituitary transcription factor protein. Gene. 336:263-273.

Correlation of Sry and Zfy Alleles of the Y Chromosome in U.S. Beef Cattle - (Abstract)

CLAWSON, M.L., HEATON, M.P., FOX, J.M., CHITKO MCKOWN, C.G., SMITH, T.P., LAEGREID, W.W. CORRELATION OF SRY AND ZFY ALLELES OF THE Y CHROMOSOME IN U.S. BEEF CATTLE. PLANT AND ANIMAL GENOME CONFERENCE PROCEEDINGS. 2004. ABSTRACT NO. P310.

Genetic Risk Factors for Failure of Passive Transfer in the Bovine Neonatal Fc Receptor - (Abstract)

LAEGREID, W.W., CLAWSON, M.L., HEATON, M.P., KEEN, J.E., CHITKO MCKOWN, C.G., FOX, J.M., SMITH, T.P., SNELLING, W.M., KEELE, J.W. GENETIC RISK FACTORS FOR FAILURE OF PASSIVE TRANSFER IN THE BOVINE NEONATAL FC RECEPTOR. PLANT AND ANIMAL GENOME CONFERENCE PROCEEDINGS. ABSTRACT NO. P642.

Development and Testing of a High-Density Cdna Microarray Resource for Cattle - (Abstract)

Suchyta, S.P., Sipkovsky, S., Kruska, R., Jeffers, A., Mcnulty, A., Coussens, M.J., Tempelman, R.J., Halgren, R.A., Saama, P.M., Bauman, D.E., Boisclair, Y.R., Burton, J.L., Collier, R.J., Depeters, E.J., Ferris, T.A., Lucy, M.C., Mcguire, M.A., Medrano, J.F., Overton, T.4., Smith, T.P., Smith, G.W., Sonstegard, T.S., Spain, J.N., Spiers, D.E., Jianbo, Y., Coussens, P.M. 2004. Development and testing of a high-density cDNA microarray resource for cattle. Proc., Plant and Animal Genome Abstracts. P831. p. 278.

Association of Capn1 Markers with Beef Tenderness in Crossbred, Multibreed Populations - (Abstract)

White, S.N., Page, B.T., Casas, E., Koohmaraie, M., Wheeler, T.L., Shackelford, S.D., Keele, J.W., Smith, T.P. 2004. Association of CAPN1 markers with beef tenderness in crossbred, multibreed populations. Proc.,Plant and Animal Genome Abstracts. P644. p. 232.

Male-Specific Sry and Zfy Haplotypes in U.S. Beef Cattle - (Peer Reviewed Journal)

Clawson, M.L., Heaton, M.P., Fox, J.M., Chitko Mckown, C.G., Smith, T.P., Laegreid, W.W. 2004. Male-specific SRY and ZFY haplotypes in U.S. beef cattle. Animal Genetics. 35(3):246-249.

Theory and Application of Genome-Based Approaches to Improve Quality and Value of Beef - (Peer Reviewed Journal)

SMITH, T.P., THALLMAN, R.M., CASAS, E., SHACKELFORD, S.D., WHEELER, T.L., KOOHMARAIE, M. 2003. THEORY AND APPLICATION OF GENOME-BASED APPROACHES TO IMPROVE QUALITY AND VALUE OF BEEF. OUTLOOK IN AGRICULTURE. 32(4):253-265. 2003.

Beta-2-Microglobulin Haplotypes in U.S. Beef Cattle and Association with Failure of Passive Transfer in Newborn Calves - (Peer Reviewed Journal)

Clawson, M.L., Heaton, M.P., Chitko Mckown, C.G., Fox, J.M., Smith, T.P., Snelling, W.M., Keele, J.W., Laegreid, W.W. 2004. Beta-2-microglobulin haplotypes in u.s. beef cattle and association with failure of passive transfer in newborn calves. Mammalian Genome. 2004. V. 15. P. 227-236.

The Callipyge Mutation for Sheep Muscular Hypertrophy - Genetics, Physiology and Meat Quality - (Other)

Freking, B.A., Smith, T.P., Leymaster, K.A. 2004. The callipyge mutation for sheep muscular hypertrophy - genetics, physiology and meat quality. In: M.F.W. te Pas, M.E. Everts and H.P. Haagsman, editors. Muscle Development in Livestock. CAB International, United Kingdom. Chapter 15. p. 317-342.

Development of Animal Cell Lines for Use in Genomic Studies - (Abstract)

CHITKO MCKOWN, C.G., FREKING, B.A., MACNEIL, M.D., SMITH, T.P. DEVELOPMENT OF ANIMAL CELL LINES FOR USE IN GENOMIC STUDIES. RESEARCH WORKERS IN ANIMAL DISEASES CONFERENCE PROCEEDINGS. 2003. ABSTRACT NO. 90P.

Recent Advances in the Genetics of Meat Tenderness - (Popular Publication)

CASAS, E., SMITH, T.P. RECENT ADVANCES IN THE GENETICS OF MEAT TENDERNESS. FEEDINFO.COM. 2003. Online available: http://www.feedinfo.com. Accessed Sept. 9, 2003.

Detection of Quantitative Trait Loci for Growth and Carcass Composition in Cattle - (Peer Reviewed Journal)

CASAS, E., SHACKELFORD, S.D., KEELE, J.W., KOOHMARAIE, M., SMITH, T.P., STONE, R.T. DETECTION OF QUANTITATIVE TRAIT LOCI FOR GROWTH AND CARCASS COMPOSITION IN CATTLE. 2003. JOURNAL OF ANIMAL SCIENCE. 81:2976-2983.

Characterization of Gene Expression in Double-Muscled and Normal-Muscled Bovine Embryos - (Peer Reviewed Journal)

POTTS, J.K., ECHTERNKAMP, S.E., SMITH, T.P., REECY, J.M. 2003. CHARACTERIZATION OF GENE EXPRESSION IN DOUBLE-MUSCLED AND NORMAL-MUSCLED BOVINE EMBRYOS. ANIMAL GENETICS. v. 34(6). p. 438-444.

Development and Testing of a High-Density Cdna Microarray Resource for Cattle - (Peer Reviewed Journal)

Suchyta, S.P., Sipkovsky, S., Kruska, R., Jeffers, A., Mcnulty, A., Tempelman, R.J., Halgren, R.G., Saama, P.M., Bauman, D.E., Boisclair, Y.R., Burton, J.L., Collier, R.J., Depeters, E.J., Ferris, T.A., Lucy, M.C., Mcguire, M.A., Medrano, J.F., Overton, T.R., Smith, T.P., Smith, G.W., Sonstegard, T.S., Spain, J.N., Spiers, D.E., Yao, J., Coussens, P.M. 2003.Development and testing of a high-density cdna microarray resource for cattle. Physiological Genomics. 15:158-164.

Prion Gene Sequence Variation Within Diverse Groups of U.S. Sheep, Beef Cattle, and Deer - (Peer Reviewed Journal)

HEATON, M.P., LEYMASTER, K.A., FREKING, B.A., HAWK, D.A., SMITH, T.P., KEELE, J.W., SNELLING, W.M., FOX, J.M., CHITKO MCKOWN, C.G., LAEGREID, W.W. PRION GENE SEQUENCE VARIATION WITHIN DIVERSE GROUPS OF U.S. SHEEP, BEEF CATTLE, AND DEER. MAMMALIAN GENOME. 2003. V. 14. P. 765-777.

Brief Note. Linkage Mapping of the Bovine Bone Morphogenetic Protein Receptor-Ib (Bmpr-Ib) to Chromosome 6 - (Peer Reviewed Journal)

KIM, J.G., SMITH, T.P., SNELLING, W.M., VALLET, J.L., CHRISTENSON, R.K. BRIEF NOTE. LINKAGE MAPPING OF THE BOVINE BONE MORPHOGENETIC PROTEIN RECEPTOR-1B (BMPR1B) TO CHROMOSOME 6. ANIMAL GENETICS. 2003. v. 34(4). p. 311.

Association of Bovine Neonatal Fc Receptor Gene (Fcgrt) Haplotypes with Serum Igg Concentration in Newborn Calves - (Peer Reviewed Journal)

LAEGREID, W.W., HEATON, M.P., KEEN, J.E., GROSSE, W.M., CHITKO MCKOWN, C.G., SMITH, T.P., KEELE, J.W., BENNETT, G.L., BESSER, T.E. ASSOCIATION OF BOVINE NEONATAL FC RECEPTOR GENE ALPHA-CHAIN GENE (FCGRT) HAPLOTYPES WITH SERUM IgG CONCENTRATION IN NEWBORN CALVES. MAMMALIAN GENOME. 2002. v. 13. p. 704-710.

Identification of the Single Base Change Causing the Callipyge Muscle Hypertrophy Phenotype, the Only Known Example of Polar Overdominance in Mammals. - (Peer Reviewed Journal)

Freking, B.A., Murphy, S., Wylie, A., Jirtle, R.L., Rhodes, S., Keele, J.W., Leymaster, K.A., Smith, T.P. 2002. Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in animals. Genome Research. 12:1496-1506.

Evaluation of Single Nucleotide Polymorphisms in Capn1 for Association with Meat Tenderness in Cattle. - (Peer Reviewed Journal)

Page, B.T., Casas, E., Heation, M.P., Cullen, N.G., Hyndman, D.L., Morris, C.A., Crawford, A.M., Wheeler, T.L., Koohmaraie, M., Keele, J.W., Smith, T.P.L. Journal Animal Science. 2002. v. 80. p. 3077-3085.

Development of 47 New Microsatellite Markers from a Bta6 Library - (Peer Reviewed Journal)

REED, K.M., IHARA, N., PONCE DE LEON, F.A., SONSTEGARD, T.S., SMITH, T.P., BENNETT, G.L., SUGIMOTO, Y., BEATTIE, C.W. DEVELOPMENT OF 47 NEW MICROSATELLITE MARKERS FROM A BTA6 LIBRARY. ANIMAL BIOTECHNOLOGY JOURNAL. 2002, Vol. 13(2), pp. 195-202.

Differential Conservation of Transcriptional Domains of Mammalian Prophet of Pit-1 Proteins Revealed by Structural Studies of the Bovine Gene and Comparative Functional Analysis of the Protein - (Peer Reviewed Journal)

Showalter, A.D., Smith, T.P., Bennett, G.L., Sloop, K.W., Whitsett, J.A., Rhodes, S.J. 2002. Differential conservation of transcriptional domains of mammalian prophet of pit-1 proteins revealed by structural studies of the bovine gene and comparative functional analysis of the protein. Gene. 291:211-221.

Differential Expression of Cyclooxygenase-2 Around the Time of Elongation in the Pig Conceptus - (Peer Reviewed Journal)

Wilson, M.E., Fahrenkrug, S.C., Smith, T.P., Rohrer, G.A., Ford, S.P. 2001. Differential expression of cyclooxygenase-2 around the time of elongation in the pig conceptus. Animal Reproduction Sciences. 71:229-237.

Selection and Use of Snp Markers for Animal Identification and Paternity Analysis in U.S. Beef Cattle - (Peer Reviewed Journal)

Mammalian Genome. 2002. v. 13. p. 272-281.

Comparative Radiation Hybrid Mapping of the Mouse High Growth (Hg) Region in Cattle and Pigs - (Proceedings/Symposium) - (01-Nov-01)

Beyond Myostatin, the Search for Interacting Alleles - (Proceedings/Symposium) - (01-Nov-01)