Evolution of the Proteome |
Hagfish |
Eptatretus burgeri |
Non-mammalian Vertebrate |
Draft Assembly |
|
Not Started |
Evolution of the Proteome |
Skate |
Raja erinacea |
Non-mammalian Vertebrate |
Draft Assembly |
|
Not Started |
Spirotrich Ciliate |
Spirotrich Ciliate |
Oxytricha trifallax [micronucleus + equivalent macronucleus sequences] |
Protist |
Draft Assembly |
|
Not Started |
Evolution of the Proteome |
Spotted Gar |
Lepisosteus oculatus |
Non-mammalian Vertebrate |
Draft Assembly |
|
Not Started |
Cat |
Cat |
Felis catus |
Mammal |
Low Coverage (~2X) |
Agencourt
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila ananassae |
Invertebrate |
Draft Assembly |
Agencourt
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila erecta |
Invertebrate |
Draft Assembly |
Agencourt
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila grimshawi |
Invertebrate |
Draft Assembly |
Agencourt
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila mojavensis |
Invertebrate |
Draft Assembly |
Agencourt
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila virilis |
Invertebrate |
Draft Assembly |
Agencourt
|
Completed |
Peromyscus |
|
Peromyscus californicus |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
|
Not Started |
Peromyscus |
|
Peromyscus leucopus |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
|
Not Started |
Peromyscus |
|
Peromyscus maniculatus |
Mammal |
Draft Sequence |
BCM-HGSC
|
In Process |
Peromyscus |
|
Peromyscus polionotus |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
|
Not Started |
Amoeba |
Amoeba |
Acanthamoeba castellanii |
Protist |
Draft Assembly |
BCM-HGSC
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Armadillo, Nine-Banded |
Dasypus novemcinctus |
Mammal |
Draft Assembly |
BCM-HGSC
|
In Process |
Additional Primate Sequencing |
Baboon |
Papio hamadryas |
Mammal |
Draft Assembly |
BCM-HGSC
|
In Process |
Beetle, Red Flour |
Beetle, Red Flour |
Tribolium castaneum |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Completed |
Multiple Mammalian Y Chromosomes |
Cow |
Bos taurus |
Mammal |
Genome refinement |
BCM-HGSC
WUGSC
|
In Process |
Cow |
Cow |
Bos taurus |
Mammal |
Draft Assembly |
BCM-HGSC
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Dolphin |
Tursiops truncates |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
|
Completed |
Top-up of Remaining 2X Mammals |
Dolphin |
Tursiops truncates |
Mammal |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila biarmipes |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila bipectinata |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila elegans |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila eugracilis |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila ficusphila |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila kikkawai |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila melanogaster, OregonR |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
Drosophila Genetic Reference Panel |
Fruit Fly |
Drosophila melanogaster |
Invertebrate |
Draft coverage of 192 lines |
BCM-HGSC
|
In Process |
Fruit Fly |
Fruit Fly |
Drosophila pseudoobscura |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Completed |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila rhopaloa |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
modENCODE Comparative Genomics |
Fruit Fly |
Drosophila takahashii |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
Ecdysozoan Sequencing |
Geophilimorph Centipede |
Strigamia maritima |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Not Started |
Gibbon |
Gibbon |
Nomascus leucogenys |
Mammal |
Draft Assembly |
BCM-HGSC
WUGSC
|
In Process |
Additional Primate Sequencing |
Gibbon |
Nomascus lucogenys |
Mammal |
Targeted BAC finishing |
BCM-HGSC
WUGSC
|
In Process |
Honey Bee |
Honey Bee |
Apis mellifera |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Completed |
Honey Bee |
Honey Bee |
Apis mellifera |
Invertebrate |
Genome refinement |
BCM-HGSC
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Hyrax |
Procavia capensis |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
|
Completed |
Top-up of Remaining 2X Mammals |
Hyrax |
Procavia capensis |
Mammal |
Draft Assembly |
BCM-HGSC
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Kangaroo Rat |
Dipodomys sp. |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
|
Completed |
Additional Primate Sequencing |
Lemur, Mouse |
Microcebus murinus |
Mammal |
Draft Assembly |
BCM-HGSC
|
In Process |
Macaque, Rhesus |
Macaque |
Macaca mulatta |
Mammal |
Draft Assembly |
BCM-HGSC
TIGR/JTC WUGSC
|
Completed |
Macaque, Rhesus |
Macaque, Rhesus |
Macaca mulatta |
Mammal |
Targeted BAC finishing |
BCM-HGSC
WUGSC
|
In Process |
Multiple Mammalian Y Chromosomes |
Macaque, Rhesus |
Macaca mulatta |
Mammal |
Genome refinement |
BCM-HGSC
WUGSC
|
In Process |
Multiple Mammalian Y Chromosomes |
Marmoset |
Callithrix jacchus |
Mammal |
Genome refinement |
BCM-HGSC
WUGSC
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Megabat |
Pteropus vampyrus |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
|
Completed |
Multiple Mammalian Y Chromosomes |
Opossum, Laboratory |
Monodelphis domestica |
Mammal |
Genome refinement |
BCM-HGSC
WUGSC
|
In Process |
Additional Primate Sequencing |
Orangutan |
Pongo pygmaeus |
Mammal |
Targeted BAC finishing |
BCM-HGSC
WUGSC
|
In Process |
Additional Primate Sequencing |
Orangutan |
Pongo pygmaeus |
Mammal |
Draft Assembly |
BCM-HGSC
WUGSC
|
In Process |
Top-up of Remaining 2X Mammals |
Pangolin |
Manis pentadactyla |
Mammal |
Draft Assembly |
BCM-HGSC
|
Not Started |
Pea Aphid |
Pea Aphid |
Acyrothosyphon pisum |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Completed |
Multiple Mammalian Y Chromosomes |
Rat |
Rattus norvegicus |
Mammal |
Genome refinement |
BCM-HGSC
WUGSC
|
Not Started |
Rat |
Rat |
Rattus norvegicus |
Mammal |
Genome refinement |
BCM-HGSC
|
In Process |
Rat |
Rat |
Rattus norvegicus |
Mammal |
Finished Sequence |
BCM-HGSC
|
Completed |
Rat SNPs |
Rat SNPs |
Rattus norvegicus |
Mammal |
SNP discovery |
BCM-HGSC
|
Completed |
Sea Urchin |
Sea Urchin |
Strongylocentrotus purpuratus |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Completed |
Wallaby, Tammar |
Wallaby, Tammar |
Macropus eugenii |
Mammal |
Low Coverage (~2X) |
BCM-HGSC
AGRF
|
In Process |
Wasp, Parasitoid |
Wasp, Parasitoid |
Nasonia giraulti |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
In Process |
Wasp, Parasitoid |
Wasp, Parasitoid |
Nasonia longicornis |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
In Process |
Wasp, Parasitoid |
Wasp, Parasitoid |
Nasonia vitripennis |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
Completed |
Worm, Acorn |
Worm, Acorn |
Saccoglossus kowalesvskii |
Invertebrate |
Draft Assembly |
BCM-HGSC
|
In Process |
Fruit Fly |
Fruit Fly |
Drosophila melanogaster |
Invertebrate |
Draft Assembly |
BDGP
BCM-HGSC
|
Completed |
Fungal Genome Initiative II |
|
Agaricus bisporus |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Origins of Multicellularity Project |
|
Allomyces macrogynus |
Fungus |
Draft Assembly |
BI/MIT
|
In Process |
Origins of Multicellularity Project |
|
Amastigomonas sp. |
Protist |
Draft Assembly |
BI/MIT
|
In Process |
Origins of Multicellularity Project |
|
Amoebidium parasiticum |
Protist |
Low Coverage (~2X) |
BI/MIT
|
In Process |
Fungal Genome Initiative I |
|
Aspergillus nidulans |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Tilapia Cichlid |
|
Astatotilapia burtoni |
Non-mammalian Vertebrate |
Low Coverage |
BI/MIT
|
In Process |
Fungal Genome Initiative II |
|
Candida albicans |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative III |
|
Candida guilliermondii |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative III |
|
Candida lusitaniae |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative II |
|
Candida tropicalis |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Origins of Multicellularity Project |
|
Capsaspora owczarzaki |
Protist |
Draft Assembly |
BI/MIT
|
In Process |
Fungal Genome Initiative III |
|
Chaetomium globosum |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative I |
|
Coccidioides immitis |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative I |
|
Coprinus cinereus |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative III |
|
Cryptococcus neoformans, serotype B |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative I |
|
Cryptococcus neoformans, serotype A |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative III |
|
Histoplasma capsulatum |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative II |
|
Lodderomyces elongisporus |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Tilapia Cichlid |
|
Metriaclima zebra |
Non-mammalian Vertebrate |
Low Coverage |
BI/MIT
|
In Process |
Dermatophyte fungi |
|
Microsporum canis |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Dermatophyte fungi |
|
Microsporum gypseum |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Origins of Multicellularity Project |
|
Mortierella verticulata |
Fungus |
Low Coverage (~2X) |
BI/MIT
|
In Process |
Origins of Multicellularity Project |
|
Nuclearia simplex |
Protist |
Draft Assembly |
BI/MIT
|
In Process |
Tilapia Cichlid |
|
Oreochromis niloticus |
Non-mammalian Vertebrate |
Draft Assembly |
BI/MIT
|
In Process |
Tilapia Cichlid |
|
Paralibidichromis chilotes |
Non-mammalian Vertebrate |
Low Coverage |
BI/MIT
|
In Process |
Fungal Genome Initiative I |
|
Pneumocystis carinii (human and mouse pathogens) |
Fungus |
Draft Assembly |
BI/MIT
|
On Hold |
Fungal Genome Initiative III |
|
Podospora anserina |
Fungus |
Draft Assembly |
BI/MIT
|
In Process |
Fungal Genome Initiative I |
|
Rhizopus oryzae |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative II |
|
Saccharomyces cerevisiae RM11-1A |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Origins of Multicellularity Project |
|
Salpingoeca or Codosiga sp. |
Protist |
Draft Assembly |
BI/MIT
|
In Process |
Origins of Multicellularity Project |
|
Schaeroforma arctica |
Protist |
Draft Assembly |
BI/MIT
|
In Process |
Fungal Genome Initiative IV |
|
Schizosaccharomyces japonicus |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative IV |
|
Schizosaccharomyces octosporus |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Origins of Multicellularity Project |
|
Spizellomyces punctatus |
Fungus |
Low Coverage (~2X) |
BI/MIT
|
In Process |
Origins of Multicellularity Project |
|
Stephanoeca or Acanthocoepis sp. |
Protist |
Low Coverage (~2X) |
BI/MIT
|
In Process |
Dermatophyte fungi |
|
Trichophyton equinum |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Dermatophyte fungi |
|
Trichophyton rubram |
Fungus |
Draft Assembly |
BI/MIT
|
In Process |
Dermatophyte fungi |
|
Trichophyton tonsurans |
Fungus |
Draft Assembly |
BI/MIT
|
In Process |
Fungal Genome Initiative III |
|
Uncinocarpus reesei |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Fungal Genome Initiative I |
|
Ustilago maydis |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Genome Analysis of Vectorial Capacity in Major Anopheles Vectors of Malaria Parasites |
|
|
Protist |
High quality assembly for 13 species; 200,000 EST of each species |
BI/MIT
|
In Process |
Comparative Analysis of Plasmodium Vivax |
|
|
Protist |
8X coverage of 6 species/strains; 40k ESTs |
BI/MIT
|
Not Started |
Comprehensive Sequencing Proposal for Plasmodium |
|
|
Protist |
Draft sequence and ESTs of multiple isolates of P. falciparum, P. vivax, and related species for comparative and model system studies |
BI/MIT
|
Not Started |
Ecdysozoan Sequencing |
Amphipod Crustacean |
Jassa slatteryi |
Invertebrate |
Draft Assembly |
BI/MIT
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Armadillo, Nine-Banded |
Dasypus novemcinctus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Bushbaby |
Otolemur garnetti |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Additional Primate Sequencing |
Bushbaby |
Otolemur garnetti |
Mammal |
Draft Assembly |
BI/MIT
|
In Process |
Fungal Genome Initiative IV |
Chytrid Fungus |
Batrachochytrium dendrobatidis |
Fungus |
Draft Assembly |
BI/MIT
|
Completed |
Evolution of the Proteome |
Coelacanth |
Latimeria chalumnae |
Non-mammalian Vertebrate |
Draft Assembly |
BI/MIT
|
In Process |
Dog |
Dog |
Canis familiaris |
Mammal |
Draft Assembly |
BI/MIT
|
Completed |
Dog |
Dog |
Canis familiaris |
Mammal |
Genome refinement |
BI/MIT
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Elephant Shrew |
Elephantulus sp. |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
On Hold |
Multiple Mammalian Genomes for Comparative Annotation |
Elephant, African Savannah |
Loxodonta africana africana |
Mammal |
Draft Assembly |
BI/MIT
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Elephant, African Savannah |
Loxodonta africana |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Ferret |
Ferret |
Mustela putorius furo |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Not Started |
Fruit Fly |
Fruit Fly |
Drosophila persimilis |
Invertebrate |
Draft Assembly |
BI/MIT
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila sechellia |
Invertebrate |
Draft Assembly |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Guinea Pig |
Cavia porcellus |
Mammal |
Draft Assembly |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Guinea Pig |
Cavia porcellus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Hedgehog, European |
Erinaceus europaeus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Top-up of Remaining 2X Mammals |
Hedgehog, European |
Erinaceus europeaus |
Mammal |
Draft Assembly |
BI/MIT
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Horse |
Equus caballus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Horse |
Equus caballus |
Mammal |
Draft Assembly |
BI/MIT
|
Completed |
Human Structural Variation |
Human |
Homo sapiens |
Mammal |
Structural Variation |
BI/MIT
BCM-HGSC WUGSC Agencourt JCVI
|
See Hyperlink |
Multiple Mammalian Genomes for Comparative Annotation |
Lemur, Mouse |
Microcebus murinus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Little brown bat |
Myotis lucifugus |
Mammal |
Draft Assembly |
BI/MIT
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Little brown bat |
Myotis lucifugus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Anolis lizard |
Lizard, Anolis |
Anolis carolinensis |
Non-mammalian Vertebrate |
Full draft genome |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Mole |
Cryptomys sp. |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
On Hold |
Mouse |
Mouse |
Mus musculus |
Mammal |
Finished Sequence |
BI/MIT
WUGSC SI BCM-HGSC
|
Completed |
Mouse Resequencing |
Mouse |
Mus musculus |
Mammal |
5 Mb targeted sequencing per line, eventually several hundred lines |
BI/MIT
|
Not Started |
Opossum, Laboratory |
Opossum, Laboratory |
Monodelphis domestica |
Mammal |
Draft Assembly |
BI/MIT
|
Completed |
Top-up of Remaining 2X Mammals |
Pika |
Ochotona princeps |
Mammal |
Draft Assembly |
BI/MIT
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Pika |
Ochotona sp. |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Pufferfish |
Pufferfish |
Tetraodon nigroviridis |
Non-mammalian Vertebrate |
Draft Assembly |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Rabbit |
Oryctolagus cuniculus |
Mammal |
Draft Assembly |
BI/MIT
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Rabbit |
Oryctolagus cuniculus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Sea Slug |
Sea Slug |
Aplysia californica |
Invertebrate |
Draft Assembly |
BI/MIT
|
In Process |
Sea Squirt |
Sea Squirt |
Ciona savignyi |
Invertebrate |
Draft Assembly |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Shrew, European Common |
Sorex araneus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Top-up of Remaining 2X Mammals |
Shrew, European Common |
Sorex araneus |
Mammal |
Draft Assembly |
BI/MIT
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Shrew, Tree |
Tupaia belangeri |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Multiple Mammalian Genomes for Comparative Annotation |
Squirrel |
Spermophilis tridecemlineatus |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Top-up of Remaining 2X Mammals |
Squirrel |
Spermophilis tridecemlineatus |
Mammal |
Draft Assembly |
BI/MIT
|
Not Started |
Additional Primate Sequencing |
Squirrel Monkey |
Saimiri sp. |
Mammal |
Draft Assembly |
BI/MIT
|
Not Started |
Stickleback, Threespine |
Stickleback, Threespine |
Gasterosteus aculeatus |
Non-mammalian Vertebrate |
Draft Assembly |
BI/MIT
|
Completed |
Ecdysozoan Sequencing |
Tardigrade |
Hypsibius dujardini |
Invertebrate |
Draft Assembly |
BI/MIT
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Tenrec (Lesser Hedgehog) |
Echinops telfairi |
Mammal |
Low Coverage (~2X) |
BI/MIT
|
Completed |
Top-up of Remaining 2X Mammals |
Tenrec, Lesser Hedgehog |
Echinops telfairi |
Mammal |
Draft Assembly |
BI/MIT
|
Not Started |
Tetrahymena |
Tetrahymena |
Tetrahymena thermophila |
Protist |
Draft Assembly |
BI/MIT
|
Not Started |
Human |
Human |
Homo sapiens |
Mammal |
Finished Sequence |
Consortium
|
Completed |
Louse, Body |
Louse, Body |
Pediculus humanus |
Invertebrate |
Draft Assembly |
JCVI
|
Completed |
Mosquito |
Mosquito |
Anopheles gambiae, S strain |
Invertebrate |
Draft Assembly |
JCVI
|
In Process |
Freshwater Polyp |
Freshwater Polyp |
Hydra magnipapillata |
Invertebrate |
Draft Assembly |
TIGR/JTC
|
In Process |
Fruit Fly |
Fruit Fly |
Drosophila willistoni |
Invertebrate |
Draft Assembly |
TIGR/JTC
|
Completed |
Pathogenomics of Trypanosomatid parasites |
|
|
Protist |
10X coverage of 25 species/strains, finishing of 6, cDNAs for 8 |
WUGSC
|
Not Started |
Nematode |
|
Heterorhabditis bacteriophora |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Nematode |
|
Pristionchus pacificus |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Trichinosis vector (human) |
|
Trichinella spiralis |
Invertebrate |
Genome refinement |
WUGSC
|
In Process |
Trichinosis vector (human) |
|
Trichinella spiralis |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Alpaca |
Vicugna pacos |
Mammal |
Low Coverage (~2X) |
WUGSC
|
In Process |
Top-up of Remaining 2X Mammals |
Alpaca |
Vicugna pacos |
Mammal |
Draft Assembly |
WUGSC
|
Not Started |
Bonobo |
Bonobo |
Pan paniscus |
Mammal |
Fosmid-end Sequencing |
WUGSC
|
Not Started |
Bug; chagas' Vector |
Bug; chagas' Vector |
Rhodnius prolixus |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Cat |
Felis catus |
Mammal |
Draft Assembly |
WUGSC
|
In Process |
Ecdysozoan Sequencing |
Chelicerate (Horseshoe Crab) |
Limulus polyphemus |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Chicken |
Chicken |
Gallus gallus |
Non-mammalian Vertebrate |
Draft Assembly |
WUGSC
|
Completed |
Chicken |
Chicken |
Gallus gallus |
Non-mammalian Vertebrate |
Genome refinement |
WUGSC
|
Completed |
Chimpanzee |
Chimpanzee |
Pan troglodytes |
Mammal |
Genome refinement |
WUGSC
|
In Process |
Chimpanzee |
Chimpanzee |
Pan troglodytes |
Mammal |
Draft Assembly |
WUGSC
BI/MIT
|
Completed |
Choanoflagellate |
Choanoflagellate |
Monosiga ovata |
Protist |
Draft Assembly |
WUGSC
|
Not Started |
Elephant Shark |
Elephant Shark |
Callorhinchus milii |
Non-mammalian Vertebrate |
Draft Assembly |
WUGSC
|
In Process |
Fruit Fly |
Fruit Fly |
Drosophila mauritiana |
Invertebrate |
Feasibility sequencing** |
WUGSC
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila simulans |
Invertebrate |
Draft Assembly |
WUGSC
|
Completed |
Fruit Fly |
Fruit Fly |
Drosophila yakuba |
Invertebrate |
Draft Assembly |
WUGSC
|
Completed |
Gibbon |
Gibbon |
Nomascus leucogenys |
Mammal |
BAC-end sequencing |
WUGSC
|
In Process |
Top-up of Remaining 2X Mammals |
Kangaroo Rat |
Dipodomys sp. |
Mammal |
Draft Assembly |
WUGSC
|
Not Started |
Lamprey, Sea |
Lamprey, Sea |
Petromyzon marinus |
Non-mammalian Vertebrate |
Draft Assembly |
WUGSC
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Lemur, Flying |
Dermoptera sp. |
Mammal |
Low Coverage (~2X) |
WUGSC
|
ON HOLD |
Top-up of Remaining 2X Mammals |
Lemur, Flying |
Dermoptera sp. |
Mammal |
Draft Assembly |
WUGSC
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Llama |
Llama sp. |
Mammal |
Low Coverage (~2X) |
WUGSC
|
Cancelled due to unavailability of material |
Additional Primate Sequencing |
Macaque, Cynomolgous |
Macaca fascicularis |
Mammal |
Draft Assembly |
WUGSC
|
In Process |
Additional Primate Sequencing |
Marmoset |
Callithrix jacchus |
Mammal |
Targeted BAC finishing |
WUGSC
BCM-HGSC
|
In Process |
Marmoset |
Marmoset |
Callithrix jacchus |
Mammal |
Draft Assembly |
WUGSC
BCM-HGSC
|
In Process |
Top-up of Remaining 2X Mammals |
Megabat |
Pteropus vampyrus |
Mammal |
Draft Assembly |
WUGSC
|
Not Started |
Mosquito |
Mosquito |
Anopheles gambiae, M strain |
Invertebrate |
Draft Assembly |
WUGSC
|
Completed |
Evolution of the Proteome |
Painted Turtle |
Chrysemys picta |
Non-mammalian Vertebrate |
Draft Assembly |
WUGSC
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Pangolin |
Manis sp. |
Mammal |
Low Coverage (~2X) |
WUGSC
|
In Process |
Sequencing the Human Microbiome |
Pilot Metagenomic Sequencing of Human Intestinal Microbiome |
|
Bacteria |
Metagenomic sequencing |
WUGSC
BCM-HGSC BI-MIT
|
In Process |
Trichoplax |
Placazoan |
Trichoplax adhaerens |
Invertebrate |
Draft Assembly |
WUGSC
|
Sequenced by DOE |
Planarian |
Planarian |
Schmidtea mediterranea |
Invertebrate |
Draft Assembly |
WUGSC
|
Completed |
Platypus, Duck-Billed |
Platypus, Duck-Billed |
Ornithorhynchus anatinus |
Mammal |
Draft Assembly |
WUGSC
|
Completed |
Ecdysozoan Sequencing |
Priapulid Worm |
Priapulus caudatus |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Roundworm |
Roundworm |
Caenorhabditis brenneri |
Invertebrate |
Genome Refinement |
WUGSC
|
In Process |
Roundworm |
Roundworm |
Caenorhabditis brenneri |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Roundworm |
Roundworm |
Caenorhabditis briggsae |
Invertebrate |
Draft Assembly |
WUGSC
|
Completed |
Roundworm |
Roundworm |
Caenorhabditis elegans |
Invertebrate |
Finished Sequence |
WUGSC
SI
|
Completed |
Roundworm |
Roundworm |
Caenorhabditis japonica |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Roundworm |
Roundworm |
Caenorhabditis n. sp. CB5161 |
Invertebrate |
Genome refinement |
WUGSC
|
In Process |
Roundworm |
Roundworm |
Caenorhabditis n. sp. CB5161 |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Roundworm |
Roundworm |
Caenorhabditis remanei |
Invertebrate |
Genome refinement |
WUGSC
|
Completed |
Roundworm |
Roundworm |
Caenorhabditis remanei |
Invertebrate |
Draft Assembly |
WUGSC
|
Completed |
modENCODE Comparative Genomics |
Roundworm |
Caenorhabditis sp.11 (JU1373) |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
modENCODE Comparative Genomics |
Roundworm |
Caenorhabditis sp.7 (JU1199) |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
modENCODE Comparative Genomics |
Roundworm |
Caenorhabditis sp.9 (JU1325) |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
Sand Flies |
Sand Fly |
Lutzomiya longipalpis |
Invertebrate |
BAC library construction; BAC-end sequencing |
WUGSC
BCM-HGSC
|
In Process |
Sand Flies |
Sand Fly |
Phlebotomus papatasi |
Invertebrate |
BAC library construction; BAC-end sequencing |
WUGSC
BCM-HGSC
|
In Process |
Sequencing the Human Microbiome |
Sequencing of Cultivable Microbes from Human Gut |
|
Bacteria |
Draft reference genomes of 100 bacteria and archea strains from human gut |
WUGSC
|
In Process |
Sequencing the Human Microbiome |
Sequencing of Cultivable Microbes from Human Gut and Vagina |
|
Bacteria |
Draft reference genomes of 200 bacteria and archea strains from human |
WUGSC
BCM-HGSC BI-MIT
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Shrew, Tree |
Tupaia belangeri |
Mammal |
Draft Assembly |
WUGSC
|
In Process |
Slime Mold |
Slime Mold |
Physarum polycephalum |
Protist |
Draft Assembly |
WUGSC
|
In Process |
Multiple Mammalian Genomes for Comparative Annotation |
Sloth |
Choloepus hoffmanni |
Mammal |
Low Coverage (~2X) |
WUGSC
|
Completed |
Top-up of Remaining 2X Mammals |
Sloth |
Choloepus hoffmanni |
Mammal |
Draft Assembly |
WUGSC
|
Not Started |
Snail, Freshwater |
Snail, Freshwater |
Biomphalaria glabrata (schistosomiasis vector) |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Spirotrich Ciliate |
Spirotrich Ciliate |
Oxytricha trifallax [macronucleus] |
Protist |
Draft Assembly |
WUGSC
|
In Process |
Strongylid Nematode |
Strongylid Nematode |
Ancylostoma caninum |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Strongylid Nematode |
Strongylid Nematode |
Cooperia oncophora |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
Strongylid Nematode |
Strongylid Nematode |
Dictyocaulus viviparus |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Strongylid Nematode |
Strongylid Nematode |
Necator americanus |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Strongylid Nematode |
Strongylid Nematode |
Nematodirus battus |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
Strongylid Nematode |
Strongylid Nematode |
Nippostrongylus brasiliensis |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
Strongylid Nematode |
Strongylid Nematode |
Oesophagostomum dentatum |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
Strongylid Nematode |
Strongylid Nematode |
Ostertagia ostertagii |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
Strongylid Nematode |
Strongylid Nematode |
Teladorsagia circumcincta |
Invertebrate |
Draft Assembly |
WUGSC
|
In Process |
Strongylid Nematode |
Strongylid Nematode |
Trichostrongylus vitrinus |
Invertebrate |
Draft Assembly |
WUGSC
|
Not Started |
Multiple Mammalian Genomes for Comparative Annotation |
Tarsier |
Tarsier syrichta |
Mammal |
Low Coverage (~2X) |
WUGSC
|
In Process |
Additional Primate Sequencing |
Tarsier |
Tarsier syrichta |
Mammal |
Draft Assembly |
WUGSC
|
In Process |
Vervet |
Vervet |
Chlorocebus aethiops |
Mammal |
Draft sequence; SNP resource |
WUGSC
|
Not Started |
Multiple Strains of Yeast |
Yeast |
Saccharomyces cerevisiae |
Fungus |
10 strains to full draft, 2-fold coverage up to 25 strains coverage |
WUGSC
|
In Process |
Yeast |
Yeast |
Saccharomyces kluyveri |
Fungus |
Draft Assembly |
WUGSC
|
Completed |
Zebra finch |
Zebra finch |
Taeniopygia guttata |
Non-mammalian Vertebrate |
Physical map |
WUGSC
|
Completed |
Zebra finch |
Zebra finch |
Taeniopygia guttata |
Non-mammalian Vertebrate |
Draft Assembly |
WUGSC
|
In Process |
Uncloned, mapped autosomal Mendelian diseases |
Human |
Homo sapiens |
Mammal |
See Hyperlink |
|
See Hyperlink |
X-linked disorders |
Human |
Homo sapiens |
Mammal |
See Hyperlink |
|
See Hyperlink |
Allelic Spectrum of Common Disease |
Human |
Homo sapiens |
Mammal |
See Hyperlink |
|
See Hyperlink |
Prairie Vole |
Prairie Vole |
Microtus ochrogaster |
Mammal |
Draft assembly, SNP resource, and low-coverage of related species |
|
Not Started |