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Volume 14(9);  September 2005
Editorial
Editorial and position papers
Mark Hermodson
Protein Sci. 2005 September; 14(9): 2215–2216. doi: 10.1110/ps.051654305.
PMCID: PMC2253483
Articles
Simple evolutionary pathways to complex proteins
Michael Lynch
Protein Sci. 2005 September; 14(9): 2217–2225. doi: 10.1110/ps.041171805.
PMCID: PMC2253472
A response to Michael Lynch
Michael J. Behe and David W. Snoke
Protein Sci. 2005 September; 14(9): 2226–2227. doi: 10.1110/ps.051674105.
PMCID: PMC2253464
Characterization and enzymatic degradation of Sup35NM, a yeast prion-like protein
Ching-Ying Chen, Kawan Rojanatavorn, A. Clay Clark, and Jason C.H. Shih
Protein Sci. 2005 September; 14(9): 2228–2235. doi: 10.1110/ps.041234405.
PMCID: PMC2253488
Mycobacterium tuberculosis Rv2536 protein implicated in specific binding to human cell lines
Javier García, Alvaro Puentes, Luis Rodríguez, Marisol Ocampo, Hernando Curtidor, Ricardo Vera, Ramses Lopez, John Valbuena, Jimena Cortes, Magnolia Vanegas, Carlos Barrero, Manuel A. Patarroyo, Mauricio Urquiza, and Manuel E. Patarroyo
Protein Sci. 2005 September; 14(9): 2236–2245. doi: 10.1110/ps.051526305.
PMCID: PMC2253470
Aggregation of granulocyte-colony stimulating factor in vitro involves a conformationally altered monomeric state
Stephen W. Raso, Jeff Abel, Jesse M. Barnes, Kevin M. Maloney, Gary Pipes, Michael J. Treuheit, Jonathan King, and David N. Brems
Protein Sci. 2005 September; 14(9): 2246–2257. doi: 10.1110/ps.051489405.
PMCID: PMC2253479
High-pressure studies of aggregation of recombinant human interleukin-1 receptor antagonist: Thermodynamics, kinetics, and application to accelerated formulation studies
Matthew B. Seefeldt, Yong-Sung Kim, Kevin P. Tolley, Jim Seely, John F. Carpenter, and Theodore W. Randolph
Protein Sci. 2005 September; 14(9): 2258–2266. doi: 10.1110/ps.051490205.
PMCID: PMC2253477
Ionic interactions at both inter-ring contact sites of GroEL are involved in transmission of the allosteric signal: A time-resolved infrared difference study
Begoña Sot, Fritzthof von Germar, Werner Mäntele, Jose María Valpuesta, Stefka G. Taneva, and Arturo Muga
Protein Sci. 2005 September; 14(9): 2267–2274. doi: 10.1110/ps.051469605.
PMCID: PMC2253480
Expression and characterization of soluble amino-terminal domain of NR2B subunit of N-methyl-d-aspartate receptor
Esther Wong, Fui-Mee Ng, Chye-Yun Yu, Peiqi Lim, Leng-Hiong Lim, Stephen F. Traynelis, and Chian-Ming Low
Protein Sci. 2005 September; 14(9): 2275–2283. doi: 10.1110/ps.051509905.
PMCID: PMC2253471
A crystallographic study of Cys69Ala flavodoxin II from Azotobacter vinelandii: Structural determinants of redox potential
Sharmini Alagaratnam, Gertie van Pouderoyen, Tjaard Pijning, Bauke W. Dijkstra, Davide Cavazzini, Gian Luigi Rossi, Walter M.A.M. Van Dongen, Carlo P.M. van Mierlo, Willem J. H. van Berkel, and Gerard W. Canters
Protein Sci. 2005 September; 14(9): 2284–2295. doi: 10.1110/ps.051582605.
PMCID: PMC2253476
Specificity inversion of Ochrobactrum anthropi D-aminopeptidase to a D,D-carboxypeptidase with new penicillin binding activity by directed mutagenesis
Michaël Delmarcelle, Marie-Caroline Boursoit, Patrice Filée, Stéphane Lucius Baurin, Jean-Marie Frère, and Bernard Joris
Protein Sci. 2005 September; 14(9): 2296–2303. doi: 10.1110/ps.051475305.
PMCID: PMC2253486
Construction and optimization of a family of genetically encoded metabolite sensors by semirational protein engineering
Karen Deuschle, Sakiko Okumoto, Marcus Fehr, Loren L. Looger, Leonid Kozhukh, and Wolf B. Frommer
Protein Sci. 2005 September; 14(9): 2304–2314. doi: 10.1110/ps.051508105.
PMCID: PMC2253473
Redesigning symmetry-related “mini-core” regions of FGF-1 to increase primary structure symmetry: Thermodynamic and functional consequences of structural symmetry
Vikash Kumar Dubey, Jihun Lee, and Michael Blaber
Protein Sci. 2005 September; 14(9): 2315–2323. doi: 10.1110/ps.051494405.
PMCID: PMC2253474
Studies of helix fraying and solvation using 13C′ isotopomers
R. Matthew Fesinmeyer, Eric S. Peterson, R. Brian Dyer, and Niels H. Andersen
Protein Sci. 2005 September; 14(9): 2324–2332. doi: 10.1110/ps.051510705.
PMCID: PMC2253462
Three amino acids that are critical to formation and stability of the P22 tailspike trimer
Matthew J. Gage, Jennifer L. Zak, and Anne Skaja Robinson
Protein Sci. 2005 September; 14(9): 2333–2343. doi: 10.1110/ps.051394605.
PMCID: PMC1995594
Nuclear transfer of perchloric acid–soluble protein by endoplasmic reticulum stressors
Hiroaki Kanouchi, Mitsuharu Matsumoto, Masaki Taga, Koji Yamada, Tatsuzo Oka, Shigenobu Toné, and Yohsuke Minatogawa
Protein Sci. 2005 September; 14(9): 2344–2349. doi: 10.1110/ps.051481105.
PMCID: PMC2253487
Localization of protein-binding sites within families of proteins
Dmitry Korkin, Fred P. Davis, and Andrej Sali
Protein Sci. 2005 September; 14(9): 2350–2360. doi: 10.1110/ps.051571905.
PMCID: PMC2253467
Thioredoxin-like domain of human κ class glutathione transferase reveals sequence homology and structure similarity to the θ class enzyme
Jie Li, Zongxiang Xia, and Jianping Ding
Protein Sci. 2005 September; 14(9): 2361–2369. doi: 10.1110/ps.051463905.
PMCID: PMC2253485
Characterization of N-linked oligosaccharides in chorion peroxidase of Aedes aegypti mosquito
Junsuo S. Li and Jianyong Li
Protein Sci. 2005 September; 14(9): 2370–2386. doi: 10.1110/ps.051419105.
PMCID: PMC2253460
An extensive thermodynamic characterization of the dimerization domain of the HIV-1 capsid protein
María C. Lidón-Moya, Francisco N. Barrera, Marta Bueno, Raúl Pérez-Jiménez, Javier Sancho, Mauricio G. Mateu, and José L. Neira
Protein Sci. 2005 September; 14(9): 2387–2404. doi: 10.1110/ps.041324305.
PMCID: PMC2253484
Alternative views of functional protein binding epitopes obtained by combinatorial shotgun scanning mutagenesis
Gábor Pál, Shun-Yin Fong, Anthony A. Kossiakoff, and Sachdev S. Sidhu
Protein Sci. 2005 September; 14(9): 2405–2413. doi: 10.1110/ps.051519805.
PMCID: PMC2253482
Oxidized and synchrotron cleaved structures of the disulfide redox center in the N-terminal domain of Salmonella typhimurium AhpF
Blaine R. Roberts, Zachary A. Wood, Thomas J. Jönsson, Leslie B. Poole, and P. Andrew Karplus
Protein Sci. 2005 September; 14(9): 2414–2420. doi: 10.1110/ps.051459705.
PMCID: PMC2253469
Rapid and accurate structure determination of coiled-coil domains using NMR dipolar couplings: Application to cGMP-dependent protein kinase Iα
Jason R. Schnell, Guo-Ping Zhou, Markus Zweckstetter, Alan C. Rigby, and James J. Chou
Protein Sci. 2005 September; 14(9): 2421–2428. doi: 10.1110/ps.051528905.
PMCID: PMC2253468
An improved experimental system for determining small folding entropy changes resulting from proline to alanine substitutions
Timothy O. Street, Christina Marchetti Bradley, and Doug Barrick
Protein Sci. 2005 September; 14(9): 2429–2435. doi: 10.1110/ps.051505705.
PMCID: PMC2253478
Structural characterization of the maytansinoid–monoclonal antibody immunoconjugate, huN901–DM1, by mass spectrometry
Lintao Wang, Godfrey Amphlett, Walter A. Blättler, John M. Lambert, and Wei Zhang
Protein Sci. 2005 September; 14(9): 2436–2446. doi: 10.1110/ps.051478705.
PMCID: PMC2253466
Effects of Phe-to-Trp mutation and fluorotryptophan incorporation on the solution structure of cardiac troponin C, and analysis of its suitability as a potential probe for in situ NMR studies
Xu Wang, Pascal Mercier, Paul-Jean Letourneau, and Brian D. Sykes
Protein Sci. 2005 September; 14(9): 2447–2460. doi: 10.1110/ps.051595805.
PMCID: PMC2253481
Solution structure of the C1-subdomain of Bacillus stearothermophilus translation initiation factor IF2
Hans Wienk, Simona Tomaselli, Cédric Bernard, Roberto Spurio, Delia Picone, Claudio O. Gualerzi, and Rolf Boelens
Protein Sci. 2005 September; 14(9): 2461–2468. doi: 10.1110/ps.051531305.
PMCID: PMC2253463
Frog albumin is expressed in skin and characterized as a novel potent trypsin inhibitor
Ying-Xia Zhang, Ren Lai, Wen-Hui Lee, and Yun Zhang
Protein Sci. 2005 September; 14(9): 2469–2477. doi: 10.1110/ps.051551105.
PMCID: PMC2253475
Protein Structure Report
Structure of the B3 domain from Arabidopsis thaliana protein At1g16640
Jeanette K. Waltner, Francis C. Peterson, Betsy L. Lytle, and Brian F. Volkman
Protein Sci. 2005 September; 14(9): 2478–2483. doi: 10.1110/ps.051606305.
PMCID: PMC2253459
Correction
CORRECTION
Protein Sci. 2005 September; 14(9): 2484.
PMCID: PMC2253465
Corrects: M. Kamran Azim, et al. Characterization of the HslU chaperone affinity for HslV protease. Protein Sci. 2005 May; 14(5): 1357–1362.
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