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Volume 14(10);  October 2005
Articles
Structural characterization of Lyn-SH3 domain in complex with a herpesviral protein reveals an extended recognition motif that enhances binding affinity
Finn Bauer, Kristian Schweimer, Heike Meiselbach, Silke Hoffmann, Paul Rösch, and Heinrich Sticht
Protein Sci. 2005 October; 14(10): 2487–2498. doi: 10.1110/ps.051563605.
PMCID: PMC2253286
Change of the unbinding mechanism upon a mutation: A molecular dynamics study of an antibody–hapten complex
Raffaele Curcio, Amedeo Caflisch, and Emanuele Paci
Protein Sci. 2005 October; 14(10): 2499–2514. doi: 10.1110/ps.041280705.
PMCID: PMC2253310
Solution structure of the low-molecular-weight protein tyrosine phosphatase from Tritrichomonas foetus reveals a flexible phosphate binding loop
Christin L.T. Gustafson, Cynthia V. Stauffacher, Klaas Hallenga, and Robert L. Van Etten
Protein Sci. 2005 October; 14(10): 2515–2525. doi: 10.1110/ps.051618805.
PMCID: PMC2253298
Delineation of xenobiotic substrate sites in rat glutathione S-transferase M1-1
Jennifer L. Hearne and Roberta F. Colman
Protein Sci. 2005 October; 14(10): 2526–2536. doi: 10.1110/ps.051651905.
PMCID: PMC2253307
A mutation designed to alter crystal packing permits structural analysis of a tight-binding fluorescein–scFv complex
Annemarie Honegger, Silvia Spinelli, Christian Cambillau, and Andreas Plückthun
Protein Sci. 2005 October; 14(10): 2537–2549. doi: 10.1110/ps.051520605.
PMCID: PMC2253284
The leukocidin pore: Evidence for an octamer with four LukF subunits and four LukS subunits alternating around a central axis
Lakmal Jayasinghe and Hagan Bayley
Protein Sci. 2005 October; 14(10): 2550–2561. doi: 10.1110/ps.051648505.
PMCID: PMC2253299
Structural and functional features of an NDP kinase from the hyperthermophile crenarchaeon Pyrobaculum aerophilum
Jean-Denis Pédelacq, Geoffrey S. Waldo, Stéphanie Cabantous, Elaine C. Liong, and Thomas C. Terwilliger
Protein Sci. 2005 October; 14(10): 2562–2573. doi: 10.1110/ps.051664205.
PMCID: PMC2253295
COG3926 and COG5526: A tale of two new lysozyme-like protein families
Jimin Pei and Nick V. Grishin
Protein Sci. 2005 October; 14(10): 2574–2581. doi: 10.1110/ps.051656805.
PMCID: PMC2253296
Effect of hexafluoroisopropanol alcohol on the structure of melittin: A molecular dynamics simulation study
Danilo Roccatano, Marco Fioroni, Martin Zacharias, and Giorgio Colombo
Protein Sci. 2005 October; 14(10): 2582–2589. doi: 10.1110/ps.051426605.
PMCID: PMC2253304
Two crystal forms of the restriction enzyme MspI–DNA complex show the same novel structure
Qian Steven Xu, Richard J. Roberts, and Hwai-Chen Guo
Protein Sci. 2005 October; 14(10): 2590–2600. doi: 10.1110/ps.051565105.
PMCID: PMC2253285
Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein
Shanteri Singh, Claudia C. Cornilescu, Robert C. Tyler, Gabriel Cornilescu, Marco Tonelli, Min S. Lee, and John L. Markley
Protein Sci. 2005 October; 14(10): 2601–2609. doi: 10.1110/ps.051579205.
PMCID: PMC2253292
Crystal structures of oxidized and reduced forms of human mitochondrial thioredoxin 2
Aude Smeets, Christine Evrard, Marie Landtmeters, Cécile Marchand, Bernard Knoops, and Jean-Paul Declercq
Protein Sci. 2005 October; 14(10): 2610–2621. doi: 10.1110/ps.051632905.
PMCID: PMC2253300
Topology characterization of a benzodiazepine-binding β-rich domain of the GABAA receptor α1 subunit
Zhiwen Xu, Shisong Fang, Haifeng Shi, Hoiming Li, Yiqun Deng, Yinglei Liao, Jiun-Ming Wu, Hui Zheng, Huaimin Zhu, Hueih-Min Chen, Shui Ying Tsang, and Hong Xue
Protein Sci. 2005 October; 14(10): 2622–2637. doi: 10.1110/ps.051555205.
PMCID: PMC2253290
Expression of human peripheral cannabinoid receptor for structural studies
Alexei A. Yeliseev, Karen K. Wong, Olivier Soubias, and Klaus Gawrisch
Protein Sci. 2005 October; 14(10): 2638–2653. doi: 10.1110/ps.051550305.
PMCID: PMC2253291
Evidence from 13C solid-state NMR spectroscopy for a lamella structure in an alanine–glycine copolypeptide: A model for the crystalline domain of Bombyx mori silk fiber
Tetsuo Asakura, Yasumoto Nakazawa, Erika Ohnishi, and Fumika Moro
Protein Sci. 2005 October; 14(10): 2654–2657. doi: 10.1110/ps.051525505.
PMCID: PMC2253294
Three-state protein folding: Experimental determination of free-energy profile
Ekaterina N. Baryshnikova, Bogdan S. Melnik, Alexei V. Finkelstein, Gennady V. Semisotnov, and Valentina E. Bychkova
Protein Sci. 2005 October; 14(10): 2658–2667. doi: 10.1110/ps.051402705.
PMCID: PMC2253297
Design of HIV-1-PR inhibitors that do not create resistance: Blocking the folding of single monomers
Ricardo A. Broglia, Guido Tiana, Ludovico Sutto, Davide Provasi, and Fabio Simona
Protein Sci. 2005 October; 14(10): 2668–2681. doi: 10.1110/ps.051670905.
PMCID: PMC2253289
Prediction of protein thermostability with a direction- and distance-dependent knowledge-based potential
Christian Hoppe and Dietmar Schomburg
Protein Sci. 2005 October; 14(10): 2682–2692. doi: 10.1110/ps.04940705.
PMCID: PMC2253293
Ionic liquids as refolding additives: N′-alkyl and N′-(ω-hydroxyalkyl) N-methylimidazolium chlorides
Christian Lange, Ganesh Patil, and Rainer Rudolph
Protein Sci. 2005 October; 14(10): 2693–2701. doi: 10.1110/ps.051596605.
PMCID: PMC2253306
Parallel interrogation of covalent intermediates in the biosynthesis of gramicidin S using high-resolution mass spectrometry
Leah M. Miller, Matthew T. Mazur, Shaun M. McLoughlin, and Neil L. Kelleher
Protein Sci. 2005 October; 14(10): 2702–2712. doi: 10.1110/ps.051553705.
PMCID: PMC2253301
In vitro study of stability and amyloid-fibril formation of two mutants of human stefin B (cystatin B) occurring in patients with EPM1
Sabina Rabzelj, Vito Turk, and Eva Žerovnik
Protein Sci. 2005 October; 14(10): 2713–2722. doi: 10.1110/ps.051609705.
PMCID: PMC2253288
Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences
Gian Gaetano Tartaglia, Andrea Cavalli, Riccardo Pellarin, and Amedeo Caflisch
Protein Sci. 2005 October; 14(10): 2723–2734. doi: 10.1110/ps.051471205.
PMCID: PMC2253302
For the Record
Organism complexity anti-correlates with proteomic β-aggregation propensity
Gian Gaetano Tartaglia, Riccardo Pellarin, Andrea Cavalli, and Amedeo Caflisch
Protein Sci. 2005 October; 14(10): 2735–2740. doi: 10.1110/ps.051473805.
PMCID: PMC2253303
Crystal lattice as biological phenotype for insect viruses
Karin Anduleit, Geoff Sutton, Jonathan M. Diprose, Peter P.C. Mertens, Jonathan M. Grimes, and David I. Stuart
Protein Sci. 2005 October; 14(10): 2741–2743. doi: 10.1110/ps.051516405.
PMCID: PMC2253309
Protein Structure Reports
Structure of the nuclease domain of ribonuclease III from M. tuberculosis at 2.1 Å
David L. Akey and James M. Berger
Protein Sci. 2005 October; 14(10): 2744–2750. doi: 10.1110/ps.051665905.
PMCID: PMC2253305
Crystal structure of yeast YER010Cp, a knotable member of the RraA protein family
Nicolas Leulliot, Sophie Quevillon-Cheruel, Marc Graille, Marc Schiltz, Karine Blondeau, Joël Janin, and Herman Van Tilbeurgh
Protein Sci. 2005 October; 14(10): 2751–2758. doi: 10.1110/ps.051684005.
PMCID: PMC2253287
Crystal structure of the Yersinia type III secretion protein YscE
Jason Phan, Brian P. Austin, and David S. Waugh
Protein Sci. 2005 October; 14(10): 2759–2763. doi: 10.1110/ps.051706105.
PMCID: PMC2253283
Correction
CORRECTION
Protein Sci. 2005 October; 14(10): 2764.
PMCID: PMC2253308
Corrects: Alina Castell, et al. Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold. Protein Sci. 2005 July; 14(7): 1850–1862.
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