Program Help
Up one levelAFNI Program Help
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1dcat: Usage: 1dcat a.1D b.1D ...
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1ddot: Usage: 1ddot [options] 1Dfile 1Dfile ...
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1deval: Usage: 1deval [options] -expr 'expression'
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1dfft: Usage: 1dfft [options] infile outfile
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1dgrayplot: Usage: 1dgrayplot [options] tsfile
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1dnorm: Usage: 1dnorm infile outfile
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1dplot: Usage: 1dplot [options] tsfile ...
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1dsvd
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24swap: Usage: 24swap [options] file ...
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2dImReg
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2swap
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3dAFNIto3D: Usage: 3dAFNIto3D [options] dataset
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3dAFNItoANALYZE: Usage: 3dAFNItoANALYZE [-4D] [-orient code] aname dset
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3dAFNItoMINC: Usage: 3dAFNItoMINC [options] dataset
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3dAFNItoNIFTI: Usage: 3dAFNItoNIFTI [options] dataset
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3dAFNItoNIML: Usage: 3dAFNItoNIML [options] dset
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3dANALYZEtoAFNI: Usage: 3dANALYZEtoAFNI [options] file1.hdr file2.hdr ...
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3dANOVA
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3dANOVA2
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3dANOVA3
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3dAnatNudge: Usage: 3dAnatNudge [options]
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3dAnhist: Usage: 3dAnhist [options] dataset
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3dAttribute: Usage: 3dAttribute [options] aname dset
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3dAutoTcorrelate: Usage: 3dAutoTcorrelate [options] dset
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3dAutobox: Usage: 3dAutobox dataset
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3dAutomask: Usage: 3dAutomask [options] dataset
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3dBRAIN_VOYAGERtoAFNI: Usage: 3dBRAIN_VOYAGERtoAFNI -input BV_VOLUME.vmr
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3dCM: Usage: 3dCM [options] dset
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3dCRUISEtoAFNI: Usage: 3dCRUISEtoAFNI -input CRUISE_HEADER.dx
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3dClipLevel: Usage: 3dClipLevel [options] dataset
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3dConvolve
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3dDTeig: Usage: 3dDTeig [options] dataset
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3dDWItoDT: Usage: 3dDWItoDT [options] gradient-file dataset
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3dDeconvolve
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3dDeconvolve_f
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3dDespike: Usage: 3dDespike [options] dataset
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3dDetrend: Usage: 3dDetrend [options] dataset
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3dEntropy: Usage: 3dEntropy dataset ...
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3dExtrema: Usage: 3dExtrema options datasets
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3dFDR: Usage: 3dFDR [options] dataset
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3dFWHM: Usage: 3dFWHM -dset dataset
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3dFourier: Usage: 3dFourier [options] dataset
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3dFriedman
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3dIntracranial
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3dKruskalWallis
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3dLRflip: Usage: 3dLRflip [-prefix ppp] dataset
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3dMINCtoAFNI: Usage: 3dMINCtoAFNI [-prefix ppp] dataset.mnc
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3dMannWhitney
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3dMax: Usage: 3dMax [options] dataset
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3dMean: Usage: 3dMean [options] dset dset ...
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3dMedianFilter: Usage: 3dMedianFilter [options] dataset
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3dNLfim
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3dNotes: Usage: 3dNotes [-a "string"] [-h "string"][-d num] [-help] dataset
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3dOverlap: Usage: 3dOverlap [options] dset1 dset2 ...
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3dROIstats: Usage: 3dROIstats -mask[n] mset [options] datasets
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3dRegAna
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3dRowFillin: Usage: 3dRowFillin [options] dataset
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3dSkullStrip
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3dSpatNorm: Usage: 3dSpatNorm [options] dataset
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3dStatClust: Usage: 3dStatClust options datasets
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3dSurf2Vol: usage: 3dSurf2Vol [options] -spec SPEC_FILE -surf_A SURF_NAME
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3dSurfMask: Usage: 3dSurfMask <-i_TYPE SURFACE> <-prefix PREFIX>
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3dSurfMaskDump
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3dTSgen
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3dTagalign: Usage: 3dTagalign [options] dset
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3dTcat
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3dTcorrelate: Usage: 3dTcorrelate [options] xset yset
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3dThreetoRGB: Usage #1: 3dThreetoRGB [options] dataset
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3dToutcount: Usage: 3dToutcount [options] dataset
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3dTqual: Usage: 3dTqual [options] dataset
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3dTshift: Usage: 3dTshift [options] dataset
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3dTsmooth: Usage: 3dTsmooth [options] dataset
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3dTstat: Usage: 3dTstat [options] dataset
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3dUndump: Usage: 3dUndump [options] infile ...
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3dUniformize
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3dVol2Surf: usage: 3dVol2Surf [options] -spec SPEC_FILE -sv SURF_VOL
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3dWarp: Usage: 3dWarp [options] dataset
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3dWarpDrive: Usage: 3dWarpDrive [options] dataset
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3dWavelets
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3dWilcoxon
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3dWinsor: Usage: 3dWinsor [options] dataset
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3dZcat: Usage: 3dZcat [options] dataset dataset ...
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3dZcutup: Usage: 3dZcutup [options] dataset
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3dZeropad: Usage: 3dZeropad [options] dataset
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3dZregrid: Usage: 3dZregrid [option] dataset
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3daxialize: Usage: 3daxialize [options] dataset
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3dbuc2fim: Usage: 3dbucket options
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3dbucket
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3dcalc
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3dclust: Usage: 3dclust [editing options] [other options] rmm vmul dset ...
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3dcopy: Usage 1: 3dcopy [-verb] [-denote] old_prefix new_prefix
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3ddelay
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3ddot: Usage: 3ddot [options] dset1 dset2
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3ddup: Usage: 3ddup [options] dataset
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3dfimplus
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3dfim: Usage: 3dfim [-im1 num] -input fname -prefix name
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3dfractionize
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3dhistog: Usage: 3dhistog [editing options] [histogram options] dataset
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3dinfo: Usage: 3dinfo [-verb OR -short] dataset [dataset ...]
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3dmaskave
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3dmaskdump
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3dmerge
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3dnewid
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3dnoise: Usage: 3dnoise [-blast] [-snr fac] [-nl x ] datasets ...
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3dnvals
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3dpc
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3dproject
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3drefit
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3drename
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3dresample
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3dretroicor
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3drotate
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3dttest
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3dvolreg
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4swap
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4Daverage
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Align_Centers
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CommandGlobb
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GetAfniPrefix
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GetAfniView
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NoExt
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RenamePanga
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SUMA_AlignToExperiment
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SUMA_Make_Spec_FS
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SUMA_Make_Spec_SF
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UpdateAfni
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make_stim_file
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AlphaSim
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CompareSurfaces
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ConvertDset
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ConvertSurface
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ConvexHull
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CreateIcosahedron
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FD2
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FSread_annot
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Ifile
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Imon
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IsoSurface
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MakeColorMap
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MapIcosahedron
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ROI2dataset
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RSFgen
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SampBias
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ScaleToMap
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SurfClust
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SurfMeasures
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SurfMesh
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SurfPatch
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SurfQual
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SurfSmooth
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SurfToSurf
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SurfaceMetrics
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Vecwarp
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Xphace
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abut
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adwarp
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afni
- afni
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afni_vcheck
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aiv
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byteorder
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cat_matvec
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ccalc
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cdf
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cjpeg
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count
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dicom_hdr
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dicom_to_raw
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djpeg
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ent16
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fftest
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file_tool
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fim2
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float_scan
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from3d
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ftosh
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ge_header
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imand
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imaver
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imcalc
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imcutup
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imdump
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immask
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imreg
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imrotate
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imstack
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imstat
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imupsam
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inspec
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mayo_analyze
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mpeg_encode
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mpegtoppm
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mritopgm
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nifti1_test
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nifti_stats
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nifti_tool
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nsize
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p2t
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plugout_drive
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plugout_ijk
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plugout_tt
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quickspec
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rmz
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rotcom
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rtfeedme
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serial_helper
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sfim
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siemens_vision
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sqwave
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strblast
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suma
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suma_change_spec
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tfim
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to3d
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waver
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whereami
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whirlgif
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AFNI program -help files