Program Help
Up one levelAFNI Program Help
- 1dcat: Usage: 1dcat a.1D b.1D ...
- 1ddot: Usage: 1ddot [options] 1Dfile 1Dfile ...
- 1deval: Usage: 1deval [options] -expr 'expression'
- 1dfft: Usage: 1dfft [options] infile outfile
- 1dgrayplot: Usage: 1dgrayplot [options] tsfile
- 1dnorm: Usage: 1dnorm infile outfile
- 1dplot: Usage: 1dplot [options] tsfile ...
- 1dsvd
- 24swap: Usage: 24swap [options] file ...
- 2dImReg
- 2swap
- 3dAFNIto3D: Usage: 3dAFNIto3D [options] dataset
- 3dAFNItoANALYZE: Usage: 3dAFNItoANALYZE [-4D] [-orient code] aname dset
- 3dAFNItoMINC: Usage: 3dAFNItoMINC [options] dataset
- 3dAFNItoNIFTI: Usage: 3dAFNItoNIFTI [options] dataset
- 3dAFNItoNIML: Usage: 3dAFNItoNIML [options] dset
- 3dANALYZEtoAFNI: Usage: 3dANALYZEtoAFNI [options] file1.hdr file2.hdr ...
- 3dANOVA
- 3dANOVA2
- 3dANOVA3
- 3dAnatNudge: Usage: 3dAnatNudge [options]
- 3dAnhist: Usage: 3dAnhist [options] dataset
- 3dAttribute: Usage: 3dAttribute [options] aname dset
- 3dAutoTcorrelate: Usage: 3dAutoTcorrelate [options] dset
- 3dAutobox: Usage: 3dAutobox dataset
- 3dAutomask: Usage: 3dAutomask [options] dataset
- 3dBRAIN_VOYAGERtoAFNI: Usage: 3dBRAIN_VOYAGERtoAFNI -input BV_VOLUME.vmr
- 3dCM: Usage: 3dCM [options] dset
- 3dCRUISEtoAFNI: Usage: 3dCRUISEtoAFNI -input CRUISE_HEADER.dx
- 3dClipLevel: Usage: 3dClipLevel [options] dataset
- 3dConvolve
- 3dDTeig: Usage: 3dDTeig [options] dataset
- 3dDWItoDT: Usage: 3dDWItoDT [options] gradient-file dataset
- 3dDeconvolve
- 3dDeconvolve_f
- 3dDespike: Usage: 3dDespike [options] dataset
- 3dDetrend: Usage: 3dDetrend [options] dataset
- 3dEntropy: Usage: 3dEntropy dataset ...
- 3dExtrema: Usage: 3dExtrema options datasets
- 3dFDR: Usage: 3dFDR [options] dataset
- 3dFWHM: Usage: 3dFWHM -dset dataset
- 3dFourier: Usage: 3dFourier [options] dataset
- 3dFriedman
- 3dIntracranial
- 3dKruskalWallis
- 3dLRflip: Usage: 3dLRflip [-prefix ppp] dataset
- 3dMINCtoAFNI: Usage: 3dMINCtoAFNI [-prefix ppp] dataset.mnc
- 3dMannWhitney
- 3dMax: Usage: 3dMax [options] dataset
- 3dMean: Usage: 3dMean [options] dset dset ...
- 3dMedianFilter: Usage: 3dMedianFilter [options] dataset
- 3dNLfim
- 3dNotes: Usage: 3dNotes [-a "string"] [-h "string"][-d num] [-help] dataset
- 3dOverlap: Usage: 3dOverlap [options] dset1 dset2 ...
- 3dROIstats: Usage: 3dROIstats -mask[n] mset [options] datasets
- 3dRegAna
- 3dRowFillin: Usage: 3dRowFillin [options] dataset
- 3dSkullStrip
- 3dSpatNorm: Usage: 3dSpatNorm [options] dataset
- 3dStatClust: Usage: 3dStatClust options datasets
- 3dSurf2Vol: usage: 3dSurf2Vol [options] -spec SPEC_FILE -surf_A SURF_NAME
- 3dSurfMask: Usage: 3dSurfMask <-i_TYPE SURFACE> <-prefix PREFIX>
- 3dSurfMaskDump
- 3dTSgen
- 3dTagalign: Usage: 3dTagalign [options] dset
- 3dTcat
- 3dTcorrelate: Usage: 3dTcorrelate [options] xset yset
- 3dThreetoRGB: Usage #1: 3dThreetoRGB [options] dataset
- 3dToutcount: Usage: 3dToutcount [options] dataset
- 3dTqual: Usage: 3dTqual [options] dataset
- 3dTshift: Usage: 3dTshift [options] dataset
- 3dTsmooth: Usage: 3dTsmooth [options] dataset
- 3dTstat: Usage: 3dTstat [options] dataset
- 3dUndump: Usage: 3dUndump [options] infile ...
- 3dUniformize
- 3dVol2Surf: usage: 3dVol2Surf [options] -spec SPEC_FILE -sv SURF_VOL
- 3dWarp: Usage: 3dWarp [options] dataset
- 3dWarpDrive: Usage: 3dWarpDrive [options] dataset
- 3dWavelets
- 3dWilcoxon
- 3dWinsor: Usage: 3dWinsor [options] dataset
- 3dZcat: Usage: 3dZcat [options] dataset dataset ...
- 3dZcutup: Usage: 3dZcutup [options] dataset
- 3dZeropad: Usage: 3dZeropad [options] dataset
- 3dZregrid: Usage: 3dZregrid [option] dataset
- 3daxialize: Usage: 3daxialize [options] dataset
- 3dbuc2fim: Usage: 3dbucket options
- 3dbucket
- 3dcalc
- 3dclust: Usage: 3dclust [editing options] [other options] rmm vmul dset ...
- 3dcopy: Usage 1: 3dcopy [-verb] [-denote] old_prefix new_prefix
- 3ddelay
- 3ddot: Usage: 3ddot [options] dset1 dset2
- 3ddup: Usage: 3ddup [options] dataset
- 3dfimplus
- 3dfim: Usage: 3dfim [-im1 num] -input fname -prefix name
- 3dfractionize
- 3dhistog: Usage: 3dhistog [editing options] [histogram options] dataset
- 3dinfo: Usage: 3dinfo [-verb OR -short] dataset [dataset ...]
- 3dmaskave
- 3dmaskdump
- 3dmerge
- 3dnewid
- 3dnoise: Usage: 3dnoise [-blast] [-snr fac] [-nl x ] datasets ...
- 3dnvals
- 3dpc
- 3dproject
- 3drefit
- 3drename
- 3dresample
- 3dretroicor
- 3drotate
- 3dttest
- 3dvolreg
- 4swap
- 4Daverage
- Align_Centers
- CommandGlobb
- GetAfniPrefix
- GetAfniView
- NoExt
- RenamePanga
- SUMA_AlignToExperiment
- SUMA_Make_Spec_FS
- SUMA_Make_Spec_SF
- UpdateAfni
- make_stim_file
- AlphaSim
- CompareSurfaces
- ConvertDset
- ConvertSurface
- ConvexHull
- CreateIcosahedron
- FD2
- FSread_annot
- Ifile
- Imon
- IsoSurface
- MakeColorMap
- MapIcosahedron
- ROI2dataset
- RSFgen
- SampBias
- ScaleToMap
- SurfClust
- SurfMeasures
- SurfMesh
- SurfPatch
- SurfQual
- SurfSmooth
- SurfToSurf
- SurfaceMetrics
- Vecwarp
- Xphace
- abut
- adwarp
- afni
- afni
- afni_vcheck
- aiv
- byteorder
- cat_matvec
- ccalc
- cdf
- cjpeg
- count
- dicom_hdr
- dicom_to_raw
- djpeg
- ent16
- fftest
- file_tool
- fim2
- float_scan
- from3d
- ftosh
- ge_header
- imand
- imaver
- imcalc
- imcutup
- imdump
- immask
- imreg
- imrotate
- imstack
- imstat
- imupsam
- inspec
- mayo_analyze
- mpeg_encode
- mpegtoppm
- mritopgm
- nifti1_test
- nifti_stats
- nifti_tool
- nsize
- p2t
- plugout_drive
- plugout_ijk
- plugout_tt
- quickspec
- rmz
- rotcom
- rtfeedme
- serial_helper
- sfim
- siemens_vision
- sqwave
- strblast
- suma
- suma_change_spec
- tfim
- to3d
- waver
- whereami
- whirlgif
- AFNI program -help files