caBIG-Related Publications by Imaging Workspace Participants

Peer-Reviewed Journal Articles

1.  Berkant Barla Cambazoglu, Olcay Sertel, Jun Kong, Joel H. Saltz, Metin N. Gurcan, Umit V. Catalyurek, "Efficient Processing of Pathological Images Using the Grid: Computer-Aided Prognosis of Neuroblastoma", Proceedings of the International Workshop on Challenges of Large Applications in Distributed Environments (CLADE 07), 2007.

2.  Erdal S, Catalyurek U, Payne P, Kamal J, Saltz J, Gurcan MN, “A Knowledge-Anchored Integrative Image Search and Retrieval System”, Journal of Digital Imaging, 2007 Nov 27.

3.  S. Erdal, Umit V. Catalyurek, Joel H. Saltz, Jyoti Kamal, Metin N. Gurcan, "Flexible patient information search and retrieval framework: Pilot Implementation", PACS and Imaging Informatics, SPIE Symposium on Medical Imaging, 2007.

4.  Metin N. Gurcan, Tony C. Pan, Ashish Sharma, Tahsin M. Kurc, Scott Oster, Stephen Langella, Shannon L. Hastings, K.M. Siddiqui, Eliot Siegel, Joel H. Saltz, "GridImage: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support", Journal of Digital Imaging, 2007: pp. 160-171.

5.  Tony C. Pan, Metin N. Gurcan, Stephen Langella, Scott Oster, Shannon L. Hastings, Ashish Sharma, Benjamin Rutt, David W. Ervin, Tahsin M. Kurc, K.M. Siddiqui, Joel H. Saltz, Eliot Siegel, "GridCAD: Grid-based Computer-aided Detection System",RadioGraphics, 2007: pp. 889-897

6.  Fred W. Prior, Bradley J. Erickson, and Lawrence Tarbox, "Open Source Software Projects of the caBIG™ In Vivo Imaging Workspace Software Special Interest Group", Journal of Digital Imaging, 2007 Nov 27.

7.  Ashish Sharma, Tony Pan, B. Barla Cambazoglu, Metin Gurcan, Tahsin Kurc and Joel Saltz, "VirtualPACS—A Federating Gateway to Access Remote Image Data Resources over the Grid", Journal of Digital Imaging, 2007 Nov 27.

Virtual Slide image analysis papers:

1.  Gurcan MN, Pan T, Shimada H, Saltz J, “Image analysis for neuroblastoma classification: Segmentation of Cell Nuclei,” 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Conference, 30 August – 3 September 2006, New York City, New York.

2.  Kong J, Shimada H, Boyer K, Saltz J, Gurcan MN, “Image analysis for automated assessment of grade of neuroblastic differentiation,” IEEE ISBI2007: International Symposium on Biomedical Imaging: From nano to macro, April 12-15, 2007, Metro Washington, D.C.

3.  Cambazoglu BB, Sertel O, Kong J, Saltz J, Gurcan MN, Catalyurek U, “Efficient processing of pathological images using the grid: Computer-aided prognosis of neuroblastoma,” Challenges of Large Scale Applications in Distributed Environments (CLADE 2007), June 25, 2007, Monterey Bay, CA.

4.  Kong J, Sertel O, Shimada H, Boyer K, Saltz J, Gurcan MN, “Computer-aided grading of neuroblastic differentiation: Multi-resolution and multi-classifier approach,” IEEE ICIP 2007: International Conference on Image Processing, September 16-19, 2007, San Antonio, TX.

5.  Kumar VS, Kurc T, Kong J, Catalyurek U, Gurcan MN, Saltz J, “Performance vs. accuracy tradeoffs for large-scale image analysis applications,” IEEE Cluster 2007, September 17-20, 2007, Austin, TX.

6.  Gurcan MN, Kong J, Sertel O, Cambazoglu BB, Saltz J, Catalyurek U, “Computerized pathological image analysis for neuroblastoma prognosis,” Accepted to AMIA 2007, November 10-14, 2007, Chicago, IL.

7.  Ruiz A, Sertel O, Ujaldon M, Catalyurek U, Saltz J, Gurcan MN, “Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma,” Accepted to IEEE BIBM’07, November 2-4, 2007, Silicon Valley, CA.

8.  Sertel O, Kong J, Lozanski G, Catalyurek U, Saltz J, Gurcan MN, “Computerized microscopic image analysis of follicular lymphoma,” Accepted to SPIE Medical Imaging 2008, 16 - 21 February 2008, San Diego, California.

9.  Sertel O, Kong J, Shimada H, Catalyurek U, Saltz J, Gurcan MN, “Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images,” Accepted to SPIE Medical Imaging 2008, 16 - 21 February 2008, San Diego, California.

10.  Kong J, Sertel O, Shimada H, Boyer K, Saltz J, Gurcan MN, “A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation,” Accepted to SPIE Medical Imaging 2008, 16 - 21 February 2008, San Diego, California.

Abstracts:

1.   Saltz J, Kurc T, Langella S, Hastings S, Oster S, Pan T, Sharma A, Gurcan MN, “gridImage-Grid Computing to Middleware Support Human Markup and Multiple CAD Systems,” 92nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), November 26-December 1, 2006, Chicago, Illinois.

2.   Saltz J, Kurc T, Langella S, Hastings S, Oster S, Pan T, Sharma A, Gurcan MN, “caGrid (Cancer Grid) Middleware- Connecting Healthcare to the Grid,” 92nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), November 26-December 1, 2006, Chicago, Illinois.

3.   Erberich S, Gurcan MN, Bhandekar M, Pan T, Sharma A, Nelson M, Shimada H, Saltz J, “Image Quantification for Neuroblastoma Assessment using DCE-MRI: A caBIG Analytical Service, 92nd Scientific Assembly and Annual Meeting of Radiological Society of North America (RSNA), November 26-December 1, 2006, Chicago, Illinois.

4.   Gurcan MN, Pan T, Shimada H, Saltz J, “Image analysis for neuroblastoma classification: Hysteresis thresholding for nuclei segmentation,” Proceedings of APIII 2006, 15-18 August 2006, Vancouver, British Columbia.

5.   Gurcan MN, Pan T, Rutt B, Sharma A, Saltz J, “gridIMAGE: A Grid computing platform for radiological and pathological image analysis,” SIIM 2007 Annual Meeting, June 7-10, 2007, Providence, Rhode Island.

6.   Hartley, TDR, Sertel O, Khan M, Catalyurek U, Saltz J, Gurcan MN, “Neuroblastoma stroma classification on the Sony Playstation 3,” APIII 2007, September 9-12, 2007, Pittsburgh, PA.

7.   Kong J, Sertel O, Shimada H, Boyer K, Saltz J, Gurcan MN, “Computer-assisted prognosis of neuroblastoma: Grading of differentiation,” APIII 2007, September 9-12, 2007, Pittsburgh, PA.

8.   Kong J, Sertel O, Lozanski G, Boyer K, Saltz J, Gurcan MN, “Automated detection of follicular centers for follicular lymphoma grading,” APIII 2007, September 9-12, 2007, Pittsburgh, PA.

9.   Sertel O, Ruiz A, Catalyurek U, Ujaldon M, Saltz J, Gurcan MN, “Computationally efficient pathological image analysis: Use of GPUs for classification of stromal density,” APIII 2007, September 9-12, 2007, Pittsburgh, PA.

10.   Sertel O, Kong J, Lozanski G, Shimada H, Catalyurek U, Saltz J, Gurcan MN, “Texture characterization for whole-slide histopathological image analysis: Applications to neuroblastoma and follicular lymphoma,” APIII 2007, September 9-12, 2007, Pittsburgh, PA.

11.   Cambazoglu BB, Pan T, Sharma A, Kumar V, Kong J, Sertel O, Gurcan MN, Catalyurek UV, Saltz J, “A grid-enabled image processing infrastructure for large pathology images,” APIII 2007, September 9-12, 2007, Pittsburgh, PA.

12.   Kong J, Sertel O, Gewirtz A, Shana’ah A, Racke F, Zhao J, Boyer K, Catalyurek U, Gurcan MN, Lozanski G, “Development of computer based system to aid pathologists in histological grading of follicular lymphomas,” ASH 2007, December 8-11, 2007, Atlanta, GA.