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Volume 3;  2007
Database
A database of PCR primers for the chloroplast genomes of higher plants
Berthold Heinze
Plant Methods. 2007; 3: 4. Published online 2007 February 27. doi: 10.1186/1746-4811-3-4.
PMCID: PMC1821018
Methodology
Methods for transient assay of gene function in floral tissues
Yongjin Shang, Kathy E Schwinn, Michael J Bennett, Donald A Hunter, Toni L Waugh, Nilangani N Pathirana, David A Brummell, Paula E Jameson, and Kevin M Davies
Plant Methods. 2007; 3: 1. Published online 2007 January 8. doi: 10.1186/1746-4811-3-1.
PMCID: PMC1781449
Reliable allele detection using SNP-based PCR primers containing Locked Nucleic Acid: application in genetic mapping
Joy Nakitandwe, Friederike Trognitz, and Bodo Trognitz
Plant Methods. 2007; 3: 2. Published online 2007 February 7. doi: 10.1186/1746-4811-3-2.
PMCID: PMC1802836
Kinome profiling of Arabidopsis using arrays of kinase consensus substrates
Tita Ritsema, Jos Joore, Wilbert van Workum, and Corné MJ Pieterse
Plant Methods. 2007; 3: 3. Published online 2007 February 12. doi: 10.1186/1746-4811-3-3.
PMCID: PMC1803769
A high-throughput method for detection of DNA in chloroplasts using flow cytometry
Beth A Rowan, Delene J Oldenburg, and Arnold J Bendich
Plant Methods. 2007; 3: 5. Published online 2007 March 23. doi: 10.1186/1746-4811-3-5.
PMCID: PMC1847512
Virus-induced gene silencing as a tool for functional analyses in the emerging model plant Aquilegia (columbine, Ranunculaceae)
Billie Gould and Elena M Kramer
Plant Methods. 2007; 3: 6. Published online 2007 April 12. doi: 10.1186/1746-4811-3-6.
PMCID: PMC1855323
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors
Camila Caldana, Wolf-Rüdiger Scheible, Bernd Mueller-Roeber, and Slobodan Ruzicic
Plant Methods. 2007; 3: 7. Published online 2007 June 8. doi: 10.1186/1746-4811-3-7.
PMCID: PMC1914063
Protocol: An improved high-throughput method for generating tissue samples in 96-well format for plant genotyping (Ice-Cap 2.0)
Katie A Clark and Patrick J Krysan
Plant Methods. 2007; 3: 8. Published online 2007 June 12. doi: 10.1186/1746-4811-3-8.
PMCID: PMC1924850
The effect of column purification on cDNA indirect labelling for microarrays
M Lia Molas and John Z Kiss
Plant Methods. 2007; 3: 9. Published online 2007 June 27. doi: 10.1186/1746-4811-3-9.
PMCID: PMC1934357
Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
Max Haring, Sascha Offermann, Tanja Danker, Ina Horst, Christoph Peterhansel, and Maike Stam
Plant Methods. 2007; 3: 11. Published online 2007 September 24. doi: 10.1186/1746-4811-3-11.
PMCID: PMC2077865
Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
Erika Varkonyi-Gasic, Rongmei Wu, Marion Wood, Eric F Walton, and Roger P Hellens
Plant Methods. 2007; 3: 12. Published online 2007 October 12. doi: 10.1186/1746-4811-3-12.
PMCID: PMC2225395
Research
Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species
Ana Rotter, Björn Usadel, Špela Baebler, Mark Stitt, and Kristina Gruden
Plant Methods. 2007; 3: 10. Published online 2007 September 4. doi: 10.1186/1746-4811-3-10.
PMCID: PMC2018691
Function and anatomy of plant siRNA pools derived from hairpin transgenes
Bess L Chau and Kevin AW Lee
Plant Methods. 2007; 3: 13. Published online 2007 November 25. doi: 10.1186/1746-4811-3-13.
PMCID: PMC2217544
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