| | Commentary MIAME/Plant – adding value to plant microarrray experiments Philip Zimmermann, Beatrice Schildknecht, David Craigon, Margarita Garcia-Hernandez, Wilhelm Gruissem, Sean May, Gaurab Mukherjee, Helen Parkinson, Seung Rhee, Ulrich Wagner, and Lars Hennig PMCID: PMC1334190 Editorial Plant Methods moves to fund open-access publishing Brian G Forde and Michael R Roberts PMCID: PMC1420297 Methodology A petal breakstrength meter for Arabidopsis abscission studies Kevin A Lease, Sung Ki Cho, and John C Walker PMCID: PMC1456958 Isolation of plant transcription factors using a modified yeast one-hybrid system Sergiy Lopato, Natalia Bazanova, Sarah Morran, Andrew S Milligan, Neil Shirley, and Peter Langridge PMCID: PMC1402289 A flexible representation of omic knowledge for thorough analysis of microarray data Yoshikazu Hasegawa, Motoaki Seki, Yoshiki Mochizuki, Naohiko Heida, Katsura Hirosawa, Naoki Okamoto, Tetsuya Sakurai, Masakazu Satou, Kenji Akiyama, Kei Iida, Kisik Lee, Shigehiko Kanaya, Taku Demura, Kazuo Shinozaki, Akihiko Konagaya, and Tetsuro Toyoda PMCID: PMC1421397 A novel fluorescent pH probe for expression in plants Alexander Schulte, Inken Lorenzen, Markus Böttcher, and Christoph Plieth PMCID: PMC1475855 ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants Kathryn E Holt, A Harvey Millar, and James Whelan PMCID: PMC1479336 Three minimum tile paths from bacterial artificial chromosome libraries of the soybean (Glycine max cv. 'Forrest'): tools for structural and functional genomics JL Shultz, C Yesudas, S Yaegashi, AJ Afzal, S Kazi, and DA Lightfoot PMCID: PMC1524761 Evaluation of cell wall preparations for proteomics: a new procedure for purifying cell walls from Arabidopsis hypocotyls Leila Feiz, Muhammad Irshad, Rafael F Pont-Lezica, Hervé Canut, and Elisabeth Jamet PMCID: PMC1524762 Tailor-made composite functions as tools in model choice: the case of sigmoidal vs bi-linear growth profiles Winfried S Peters and Tobias I Baskin PMCID: PMC1524760 A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts Rebecca Bart, Mawsheng Chern, Chang-Jin Park, Laura Bartley, and Pamela C Ronald PMCID: PMC1524957 Metabolic labeling of plant cell cultures with K15NO3 as a tool for quantitative analysis of proteins and metabolites Wolfgang R Engelsberger, Alexander Erban, Joachim Kopka, and Waltraud X Schulze PMCID: PMC1570346 In planta transient expression as a system for genetic and biochemical analyses of chlorophyll biosynthesis Ruairidh JH Sawers, Phyllis R Farmer, Peter Moffett, and Thomas P Brutnell PMCID: PMC1578556 An improved method for preparing Agrobacterium cells that simplifies the Arabidopsis transformation protocol Elke Logemann, Rainer P Birkenbihl, Bekir Ülker, and Imre E Somssich PMCID: PMC1636042 Screening for plant transporter function by expressing a normalized Arabidopsis full-length cDNA library in Xenopus oocytes Hussam H Nour-Eldin, Morten HH Nørholm, and Barbara A Halkier PMCID: PMC1637106 A rapid and robust method of identifying transformed Arabidopsis thaliana seedlings following floral dip transformation Samuel J Harrison, Ellie K Mott, Kate Parsley, Sue Aspinall, John C Gray, and Amanda Cottage PMCID: PMC1636043 Research Development of a pooled probe method for locating small gene families in a physical map of soybean using stress related paralogues and a BAC minimum tile path Kay L Shopinski, Muhammad J Iqbal, Jeffry L Shultz, Dheepakkumaran Jayaraman, and David A Lightfoot PMCID: PMC1716159 Reviews Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants Xiaohan Yang, Brian E Scheffler, and Leslie A Weston PMCID: PMC1526718 The visible touch: in planta visualization of protein-protein interactions by fluorophore-based methods Riyaz A Bhat, Thomas Lahaye, and Ralph Panstruga PMCID: PMC1523328 In situ methods to localize transgenes and transcripts in interphase nuclei: a tool for transgenic plant research Ana Paula Santos, Eva Wegel, George C Allen, William F Thompson, Eva Stoger, Peter Shaw, and Rita Abranches PMCID: PMC1635696 |
