| | Research Articles Variance of the SGK1 Gene Is Associated with Insulin Secretion in Different European Populations: Results from the TUEF, EUGENE2, and METSIM Studies Björn Friedrich, Peter Weyrich, Alena Stančáková, Jianjung Wang, Johanna Kuusisto, Markku Laakso, Giorgio Sesti, Elena Succurro, Ulf Smith, Torben Hansen, Oluf Pedersen, Fausto Machicao, Silke Schäfer, Florian Lang, Teut Risler, Susanne Ullrich, Norbert Stefan, Andreas Fritsche, and Hans-Ulrich Häring PMCID: PMC2575233 Endogenous VEGF Is Required for Visual Function: Evidence for a Survival Role on Müller Cells and Photoreceptors Magali Saint-Geniez, Arindel S. R. Maharaj, Tony E. Walshe, Budd A. Tucker, Eiichi Sekiyama, Tomoki Kurihara, Diane C. Darland, Michael J. Young, and Patricia A. D'Amore PMCID: PMC2571983 Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease Kelly B. Wyatt, Paula F. Campos, M. Thomas P. Gilbert, Sergios-Orestis Kolokotronis, Wayne H. Hynes, Rob DeSalle, Peter Daszak, Ross D. E. MacPhee, and Alex D. Greenwood PMCID: PMC2572834 Natural Host Genetic Resistance to Lentiviral CNS Disease: A Neuroprotective MHC Class I Allele in SIV-Infected Macaques Joseph L. Mankowski, Suzanne E. Queen, Caroline S. Fernandez, Patrick M. Tarwater, Jami M. Karper, Robert J. Adams, and Stephen J. Kent PMCID: PMC2574413 Small Molecule, Non-Peptide p75NTR Ligands Inhibit Aβ-Induced Neurodegeneration and Synaptic Impairment Tao Yang, Juliet K. Knowles, Qun Lu, Hong Zhang, Ottavio Arancio, Laura A. Moore, Timothy Chang, Qian Wang, Katrin Andreasson, Jayakumar Rajadas, Gerald G. Fuller, Youmei Xie, Stephen M. Massa, and Frank M. Longo PMCID: PMC2575383 Androgen Receptor Functional Analyses by High Throughput Imaging: Determination of Ligand, Cell Cycle, and Mutation-Specific Effects Adam T. Szafran, Maria Szwarc, Marco Marcelli, and Michael A. Mancini PMCID: PMC2572143 Progestin Receptor-Mediated Reduction of Anxiety-Like Behavior in Male Rats Catherine J. Auger and Robin M. Forbes-Lorman PMCID: PMC2574412 Comprehensive Characterization of Molecular Interactions Based on Nanomechanics Murali Krishna Ghatkesar, Hans-Peter Lang, Christoph Gerber, Martin Hegner, and Thomas Braun PMCID: PMC2572191 GC Content Increased at CpG Flanking Positions of Fish Genes Compared with Sea Squirt Orthologs as a Mechanism for Reducing Impact of DNA Methylation Yong Wang and Frederick C. C. Leung PMCID: PMC2580031 Persistence of Mycoplasma genitalium Following Azithromycin Therapy Catriona S. Bradshaw, Marcus Y. Chen, and Christopher K. Fairley PMCID: PMC2572837 Structures of the Signal Recognition Particle Receptor from the Archaeon Pyrococcus furiosus: Implications for the Targeting Step at the Membrane Pascal F. Egea, Hiro Tsuruta, Gladys P. de Leon, Johanna Napetschnig, Peter Walter, and Robert M. Stroud PMCID: PMC2572998 Identification of Spt5 Target Genes in Zebrafish Development Reveals Its Dual Activity In Vivo Keerthi Krishnan, Nathan Salomonis, and Su Guo PMCID: PMC2575381 Sex Differences in Neural Activation to Facial Expressions Denoting Contempt and Disgust André Aleman and Marte Swart PMCID: PMC2572192 The Transcriptional Repressor Protein NsrR Senses Nitric Oxide Directly via a [2Fe-2S] Cluster Nicholas P. Tucker, Matthew G. Hicks, Thomas A. Clarke, Jason C. Crack, Govind Chandra, Nick E. Le Brun, Ray Dixon, and Matthew I. Hutchings PMCID: PMC2577008 The Scale-Free Dynamics of Eukaryotic Cells Miguel A. Aon, Marc R. Roussel, Sonia Cortassa, Brian O'Rourke, Douglas B. Murray, Manfred Beckmann, and David Lloyd PMCID: PMC2575856 Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum Joann Mudge, Neil A. Miller, Irina Khrebtukova, Ingrid E. Lindquist, Gregory D. May, Jim J. Huntley, Shujun Luo, Lu Zhang, Jennifer C. van Velkinburgh, Andrew D. Farmer, Sharon Lewis, William D. Beavis, Faye D. Schilkey, Selene M. Virk, C. Forrest Black, M. Kathy Myers, Lar C. Mader, Ray J. Langley, John P. Utsey, Ryan W. Kim, Rosalinda C. Roberts, Sat Kirpal Khalsa, Meredith Garcia, Victoria Ambriz-Griffith, Richard Harlan, Wendy Czika, Stanton Martin, Russell D. Wolfinger, Nora I. Perrone-Bizzozero, Gary P. Schroth, and Stephen F. Kingsmore PMCID: PMC2576459 Floral Morphogenesis: Stochastic Explorations of a Gene Network Epigenetic Landscape Elena R. Álvarez-Buylla, Álvaro Chaos, Maximino Aldana, Mariana Benítez, Yuriria Cortes-Poza, Carlos Espinosa-Soto, Diego A. Hartasánchez, R. Beau Lotto, David Malkin, Gerardo J. Escalera Santos, and Pablo Padilla-Longoria PMCID: PMC2572848 Osteoclasts Are Active in Bone Forming Metastases of Prostate Cancer Patients Ilaria Roato, Patrizia D’Amelio, Eva Gorassini, Anastasia Grimaldi, Lisa Bonello, Cristian Fiori, Luisa Delsedime, Alessandro Tizzani, Alfredo De Libero, Giancarlo Isaia, and Riccardo Ferracini PMCID: PMC2574033 Recognition Profile of Emotions in Natural and Virtual Faces Miriam Dyck, Maren Winbeck, Susanne Leiberg, Yuhan Chen, Rurben C. Gur, and Klaus Mathiak PMCID: PMC2574410 ICAM-2 Expression Mediates a Membrane-Actin Link, Confers a Nonmetastatic Phenotype and Reflects Favorable Tumor Stage or Histology in Neuroblastoma Karina Jin Yoon, Doris A. Phelps, Rebecca A. Bush, Joanna S. Remack, Catherine A. Billups, and Joseph D. Khoury PMCID: PMC2575377 Of Asian Forests and European Fields: Eastern U.S. Plant Invasions in a Global Floristic Context Jason D. Fridley PMCID: PMC2572842 Functional Diffusion Tensor Imaging: Measuring Task-Related Fractional Anisotropy Changes in the Human Brain along White Matter Tracts René C. W. Mandl, Hugo G. Schnack, Marcel P. Zwiers, Arjen van der Schaaf, René S. Kahn, and Hilleke E. Hulshoff Pol PMCID: PMC2574009 Retinoblastoma Loss Modulates DNA Damage Response Favoring Tumor Progression Marcos Seoane, Pablo Iglesias, Teresa Gonzalez, Fernando Dominguez, Maximo Fraga, Carlos Aliste, Jeronimo Forteza, and Jose A. Costoya PMCID: PMC2573954 Intra-Articular Fms-Like Tyrosine Kinase 3 Ligand Expression Is a Driving Force in Induction and Progression of Arthritis Mats Dehlin, Maria Bokarewa, Robert Rottapel, Simon J. Foster, Mattias Magnusson, Leif E. Dahlberg, and Andrej Tarkowski PMCID: PMC2575855 Levels of CMV Specific CD4 T Cells Are Dynamic and Correlate with CMV Viremia after Allogeneic Stem Cell Transplantation Thomas Widmann, Urban Sester, Barbara C. Gärtner, Jörg Schubert, Michael Pfreundschuh, Hans Köhler, and Martina Sester PMCID: PMC2572846 Disruption of Learned Timing in P/Q Calcium Channel Mutants Akira Katoh, Peter J. Chapman, and Jennifer L. Raymond PMCID: PMC2572847 HIV-1 Disease-Influencing Effects Associated with ZNRD1, HCP5 and HLA-C Alleles Are Attributable Mainly to Either HLA-A10 or HLA-B*57 Alleles Gabriel Catano, Hemant Kulkarni, Weijing He, Vincent C. Marconi, Brian K. Agan, Michael Landrum, Stephanie Anderson, Judith Delmar, Vanessa Telles, Li Song, John Castiblanco, Robert A. Clark, Matthew J. Dolan, and Sunil K. Ahuja PMCID: PMC2574440 Seropositivity to Herpes Simplex Virus Antibodies and Risk of Alzheimer's Disease: A Population-Based Cohort Study Luc Letenneur, Karine Pérès, Hervé Fleury, Isabelle Garrigue, Pascale Barberger-Gateau, Catherine Helmer, Jean-Marc Orgogozo, Serge Gauthier, and Jean-François Dartigues PMCID: PMC2572852 Dystroglycan, Tks5 and Src Mediated Assembly of Podosomes in Myoblasts Oliver Thompson, Iivari Kleino, Luca Crimaldi, Mario Gimona, Kalle Saksela, and Steve J. Winder PMCID: PMC2572840 Education and Risk of Cancer in a Large Cohort of Men and Women in the United States Traci Mouw, Annemarie Koster, Margaret E. Wright, Madeleine M. Blank, Steven C. Moore, Albert Hollenbeck, and Arthur Schatzkin PMCID: PMC2572908 HIV Incidence in Rural South Africa: Comparison of Estimates from Longitudinal Surveillance and Cross-Sectional cBED Assay Testing Till Bärnighausen, Claudia Wallrauch, Alex Welte, Thomas A. McWalter, Nhlanhla Mbizana, Johannes Viljoen, Natalie Graham, Frank Tanser, Adrian Puren, and Marie-Louise Newell PMCID: PMC2572841 Intrinsic Capability of Budding Yeast Cofilin to Promote Turnover of Tropomyosin-Bound Actin Filaments Xiaoxue Fan, Skylar Martin-Brown, Laurence Florens, and Rong Li PMCID: PMC2572843 The Zinc Transporter SLC39A13/ZIP13 Is Required for Connective Tissue Development; Its Involvement in BMP/TGF-β Signaling Pathways Toshiyuki Fukada, Natacha Civic, Tatsuya Furuichi, Shinji Shimoda, Kenji Mishima, Hiroyuki Higashiyama, Yayoi Idaira, Yoshinobu Asada, Hiroshi Kitamura, Satoru Yamasaki, Shintaro Hojyo, Manabu Nakayama, Osamu Ohara, Haruhiko Koseki, Heloisa G. dos Santos, Luisa Bonafe, Russia Ha-Vinh, Andreas Zankl, Sheila Unger, Marius E. Kraenzlin, Jacques S. Beckmann, Ichiro Saito, Carlo Rivolta, Shiro Ikegawa, Andrea Superti-Furga, and Toshio Hirano PMCID: PMC2575416 Rad51 Polymerization Reveals a New Chromatin Remodeling Mechanism Pauline Dupaigne, Christophe Lavelle, Anthony Justome, Sophie Lafosse, Gilles Mirambeau, Marc Lipinski, Olivier Piétrement, and Eric Le Cam PMCID: PMC2574414 Inhibitory Control Over Ca2+ Sparks via Mechanosensitive Channels Is Disrupted in Dystrophin Deficient Muscle but Restored by Mini-Dystrophin Expression Martin D. H. Teichmann, Frederic v. Wegner, Rainer H. A. Fink, Jeffrey S. Chamberlain, Bradley S. Launikonis, Boris Martinac, and Oliver Friedrich PMCID: PMC2575405 Genomic Androgen Receptor-Occupied Regions with Different Functions, Defined by Histone Acetylation, Coregulators and Transcriptional Capacity Li Jia, Benjamin P. Berman, Unnati Jariwala, Xiting Yan, Jon P. Cogan, Allison Walters, Ting Chen, Grant Buchanan, Baruch Frenkel, and Gerhard A. Coetzee PMCID: PMC2577007 S-Phase Favours Notch Cell Responsiveness in the Drosophila Bristle Lineage Sylvie Remaud, Agnès Audibert, and Michel Gho PMCID: PMC2574411 A One Pot, One Step, Precision Cloning Method with High Throughput Capability Carola Engler, Romy Kandzia, and Sylvestre Marillonnet PMCID: PMC2574415 Perinatal Asphyxia Reduces Dentate Granule Cells and Exacerbates Methamphetamine-Induced Hyperlocomotion in Adulthood Tomoyasu Wakuda, Hideo Matsuzaki, Katsuaki Suzuki, Yasuhide Iwata, Chie Shinmura, Shiro Suda, Keiko Iwata, Shigeyuki Yamamoto, Genichi Sugihara, Kenji J. Tsuchiya, Takatoshi Ueki, Kazuhiko Nakamura, Daiichiro Nakahara, Nori Takei, and Norio Mori PMCID: PMC2572851 Decomposing Neural Synchrony: Toward an Explanation for Near-Zero Phase-Lag in Cortical Oscillatory Networks Rajasimhan Rajagovindan and Mingzhou Ding PMCID: PMC2573956 Analysis of Myc-Induced Histone Modifications on Target Chromatin Francesca Martinato, Matteo Cesaroni, Bruno Amati, and Ernesto Guccione PMCID: PMC2574517 A Precise Bicoid Gradient Is Nonessential during Cycles 11–13 for Precise Patterning in the Drosophila Blastoderm Elena M. Lucchetta, Meghan E. Vincent, and Rustem F. Ismagilov PMCID: PMC2578877 A miRNA Signature of Prion Induced Neurodegeneration Reuben Saba, Chelsey D. Goodman, Rhiannon L. C. H. Huzarewich, Catherine Robertson, and Stephanie A. Booth PMCID: PMC2575400 From Oxford to Hawaii Ecophysiological Barriers Limit Human Progression in Ten Sport Monuments François-Denis Desgorces, Geoffroy Berthelot, Nour El Helou, Valérie Thibault, Marion Guillaume, Muriel Tafflet, Olivier Hermine, and Jean-François Toussaint PMCID: PMC2572844 Structural Efficiency of Percolated Landscapes in Flow Networks M. Ángeles Serrano and Paolo De Los Rios PMCID: PMC2575234 CD133 Is a Marker of Bioenergetic Stress in Human Glioma Corinne E. Griguer, Claudia R. Oliva, Eric Gobin, Pascale Marcorelles, Dale J. Benos, Jack R. Lancaster, Jr, and G. Yancey Gillespie PMCID: PMC2577012 Rest-Mediated Regulation of Extracellular Matrix Is Crucial for Neural Development Yuh-Man Sun, Megan Cooper, Sophie Finch, Hsuan-Hwai Lin, Zhou-Feng Chen, Brenda P. Williams, and Noel J. Buckley PMCID: PMC2573962 What Determines the Assembly of Transcriptional Network Motifs in Escherichia coli? Francisco M. Camas and Juan F. Poyatos PMCID: PMC2577066 The Internal Sequence of the Peptide-Substrate Determines Its N-Terminus Trimming by ERAP1 Irini Evnouchidou, Frank Momburg, Athanasios Papakyriakou, Angeliki Chroni, Leondios Leondiadis, Shih-Chung Chang, Alfred L. Goldberg, and Efstratios Stratikos PMCID: PMC2573961 Pilus Operon Evolution in Streptococcus pneumoniae Is Driven by Positive Selection and Recombination Alessandro Muzzi, Monica Moschioni, Antonello Covacci, Rino Rappuoli, and Claudio Donati PMCID: PMC2576445 Integrative Genomic Data Mining for Discovery of Potential Blood-Borne Biomarkers for Early Diagnosis of Cancer Yongliang Yang, Lakshmanan K. Iyer, S. James Adelstein, and Amin I. Kassis PMCID: PMC2575235 Male-Specific Association between a γ-Secretase Polymorphism and Premature Coronary Atherosclerosis Karen M. J. van Loo, Tim Dejaegere, Martine van Zweeden, Jessica E. van Schijndel, Cisca Wijmenga, Mieke D. Trip, and Gerard J. M. Martens PMCID: PMC2573958 Visuo-Motor Coordination Deficits and Motor Impairments in Parkinson's Disease Rivka Inzelberg, Edna Schechtman, and Shraga Hocherman PMCID: PMC2576439 Association of Interacting Genes in the Toll-Like Receptor Signaling Pathway and the Antibody Response to Pertussis Vaccination Tjeerd G. Kimman, Sander Banus, Naomi Reijmerink, Johan Reimerink, Foekje F. Stelma, Gerard H. Koppelman, Carel Thijs, Dirkje S. Postma, and Marjan Kerkhof PMCID: PMC2573957 A Comparative Structural Bioinformatics Analysis of the Insulin Receptor Family Ectodomain Based on Phylogenetic Information Miguel E. Rentería, Neha S. Gandhi, Pablo Vinuesa, Erik Helmerhorst, and Ricardo L. Mancera PMCID: PMC2577065 Neonatal Oral Imitation in Patients with Severe Brain Damage Tohshin Go and Yukuo Konishi PMCID: PMC2576440 Mecp2-Null Mice Provide New Neuronal Targets for Rett Syndrome Rocio G. Urdinguio, Lidia Lopez-Serra, Pilar Lopez-Nieva, Miguel Alaminos, Ramon Diaz-Uriarte, Agustin F. Fernandez, and Manel Esteller PMCID: PMC2576441 Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression Juliette Colinas, Scott C. Schmidler, Gil Bohrer, Borislav Iordanov, and Philip N. Benfey PMCID: PMC2576458 Role of CCL3L1-CCR5 Genotypes in the Epidemic Spread of HIV-1 and Evaluation of Vaccine Efficacy Hemant Kulkarni, Vincent C. Marconi, Brian K. Agan, Carole McArthur, George Crawford, Robert A. Clark, Matthew J. Dolan, and Sunil K. Ahuja PMCID: PMC2576446 Anopheles gambiae APL1 Is a Family of Variable LRR Proteins Required for Rel1-Mediated Protection from the Malaria Parasite, Plasmodium berghei Michelle M. Riehle, Jiannong Xu, Brian P. Lazzaro, Susan M. Rottschaefer, Boubacar Coulibaly, Madjou Sacko, Oumou Niare, Isabelle Morlais, Sekou F. Traore, and Kenneth D. Vernick PMCID: PMC2577063 An Auxin Transport-Based Model of Root Branching in Arabidopsis thaliana Mikaël Lucas, Yann Guédon, Christian Jay-Allemand, Christophe Godin, and Laurent Laplaze PMCID: PMC2577305 Campylobacter Infection as a Trigger for Guillain-Barré Syndrome in Egypt Thomas F. Wierzba, Ibrahim Adib Abdel-Messih, Bayoumi Gharib, Shahida Baqar, Amina Hendaui, Ibrahim Khalil, Tarek A. Omar, Hamed E. Khayat, Shannon D. Putnam, John W. Sanders, Lai-King Ng, Lawrence J. Price, Daniel A. Scott, and Robert R. Frenck PMCID: PMC2577883 Neuroanatomical Pattern of Mitochondrial Complex I Pathology Varies between Schizophrenia, Bipolar Disorder and Major Depression Dorit Ben-Shachar and Rachel Karry PMCID: PMC2579333 Probabilistic Models for Continuous Ontogenetic Transition Processes Anna Kuparinen, Robert B. O'Hara, and Juha Merilä PMCID: PMC2577064 Predicting Adaptive Behavior in the Environment from Central Nervous System Dynamics Alex Proekt, Jane Wong, Yuriy Zhurov, Nataliya Kozlova, Klaudiusz R. Weiss, and Vladimir Brezina PMCID: PMC2576442 Losing the Big Picture: How Religion May Control Visual Attention Lorenza S. Colzato, Wery P. M. van den Wildenberg, and Bernhard Hommel PMCID: PMC2577734 Prevalence and Factors Associated with Intestinal Parasitic Infection among Children in an Urban Slum of Karachi Vikram Mehraj, Juanita Hatcher, Saeed Akhtar, Ghazala Rafique, and Mohammad Asim Beg PMCID: PMC2577067 Rickettsia conorii Transcriptional Response within Inoculation Eschar Patricia Renesto, Clarisse Rovery, Jacques Schrenzel, Quentin Leroy, Antoine Huyghe, Wenjun Li, Hubert Lepidi, Patrice François, and Didier Raoult PMCID: PMC2577010 Impaired Autoimmune T Helper 17 Cell Responses Following DNA Vaccination against Rat Experimental Autoimmune Encephalomyelitis Åsa Andersson, Magnus Isaksson, Judit Wefer, Anna Norling, Amilcar Flores-Morales, Fredrik Rorsman, Olle Kämpe, Robert A. Harris, and Anna Lobell PMCID: PMC2577303 Adult-Like Anti-Mycobacterial T Cell and In Vivo Dendritic Cell Responses Following Neonatal Immunization with Ag85B-ESAT-6 in the IC31® Adjuvant Arun T. Kamath, Anne-Françoise Rochat, Mario P. Valenti, Else Marie Agger, Karen Lingnau, Peter Andersen, Paul-Henri Lambert, and Claire-Anne Siegrist PMCID: PMC2577009 Following 411 Cochrane Protocols to Completion: A Retrospective Cohort Study Andrea C. Tricco, Jamie Brehaut, Maggie H. Chen, and David Moher PMCID: PMC2577297 Evolutionary Patterning: A Novel Approach to the Identification of Potential Drug Target Sites in Plasmodium falciparum Pierre M. Durand, Kubendran Naidoo, and Theresa L. Coetzer PMCID: PMC2577034 Dysregulation of Mitochondrial Dynamics and the Muscle Transcriptome in ICU Patients Suffering from Sepsis Induced Multiple Organ Failure Katarina Fredriksson, Inga Tjäder, Pernille Keller, Natasa Petrovic, Bo Ahlman, Camilla Schéele, Jan Wernerman, James A. Timmons, and Olav Rooyackers PMCID: PMC2579334 Memory Extinction Entails the Inhibition of the Transcription Factor NF-κB Emiliano Merlo and Arturo Romano PMCID: PMC2577885 Identification of CD4−CD8− Double-Negative Natural Killer T Cell Precursors in the Thymus Nyambayar Dashtsoodol, Hiroshi Watarai, Sakura Sakata, and Masaru Taniguchi PMCID: PMC2577011 Visual Cells Remember Earlier Applied Target: Plasticity of Orientation Selectivity Narcis Ghisovan, Abdellatif Nemri, Svetlana Shumikhina, and Stephane Molotchnikoff PMCID: PMC2577299 Testing Simulation Theory with Cross-Modal Multivariate Classification of fMRI Data Joset A. Etzel, Valeria Gazzola, and Christian Keysers PMCID: PMC2577733 The Genetics of Primary Haemorrhagic Stroke, Subarachnoid Haemorrhage and Ruptured Intracranial Aneurysms in Adults George Peck, Liam Smeeth, John Whittaker, Juan Pablo Casas, Aroon Hingorani, and Pankaj Sharma PMCID: PMC2579487 Astrocytic Ca2+ Waves Guide CNS Growth Cones to Remote Regions of Neuronal Activity Johanna Hung and Michael A. Colicos PMCID: PMC2577300 How Should the Impact of Different Presentations of Treatment Effects on Patient Choice Be Evaluated? A Pilot Randomized Trial Cheryl Carling, Doris Tove Kristoffersen, Jeph Herrin, Shaun Treweek, Andrew D. Oxman, Holger Schünemann, Elie A. Akl, and Victor Montori PMCID: PMC2585274 Detection of microRNA Expression in Human Peripheral Blood Microvesicles Melissa Piper Hunter, Noura Ismail, Xiaoli Zhang, Baltazar D. Aguda, Eun Joo Lee, Lianbo Yu, Tao Xiao, Jeffrey Schafer, Mei-Ling Ting Lee, Thomas D. Schmittgen, S. Patrick Nana-Sinkam, David Jarjoura, and Clay B. Marsh PMCID: PMC2577891 Tumor BRCA1, RRM1 and RRM2 mRNA Expression Levels and Clinical Response to First-Line Gemcitabine plus Docetaxel in Non-Small-Cell Lung Cancer Patients Ioannis Boukovinas, Chara Papadaki, Pedro Mendez, Miquel Taron, Dimitris Mavroudis, Anastasios Koutsopoulos, Maria Sanchez-Ronco, Jose Javier Sanchez, Maria Trypaki, Eustathios Staphopoulos, Vassilis Georgoulias, Rafael Rosell, and John Souglakos PMCID: PMC2579656 A Confidence Interval for the Wallace Coefficient of Concordance and Its Application to Microbial Typing Methods Francisco R. Pinto, José Melo-Cristino, and Mário Ramirez PMCID: PMC2577298 Evolving Synaptic Plasticity with an Evolutionary Cellular Development Model Uri Yerushalmi and Mina Teicher PMCID: PMC2577323 Comprehensive Biostatistical Analysis of CpG Island Methylator Phenotype in Colorectal Cancer Using a Large Population-Based Sample Katsuhiko Nosho, Natsumi Irahara, Kaori Shima, Shoko Kure, Gregory J. Kirkner, Eva S. Schernhammer, Aditi Hazra, David J. Hunter, John Quackenbush, Donna Spiegelman, Edward L. Giovannucci, Charles S. Fuchs, and Shuji Ogino PMCID: PMC2579485 Wound-Induced Endogenous Jasmonates Stunt Plant Growth by Inhibiting Mitosis Yi Zhang and John G. Turner PMCID: PMC2577035 Converting Endangered Species Categories to Probabilities of Extinction for Phylogenetic Conservation Prioritization Arne Ø. Mooers, Daniel P. Faith, and Wayne P. Maddison PMCID: PMC2577618 Locked Nucleic Acid Pentamers as Universal PCR Primers for Genomic DNA Amplification Zhen Sun, Zhi Chen, Xiaoli Hou, Shuping Li, Haihong Zhu, Ji Qian, Daru Lu, and Wei Liu PMCID: PMC2577006 Alexithymic Trait and Voluntary Control in Healthy Adults Xiaosi Gu, Xun Liu, Kevin G. Guise, John Fossella, Kai Wang, and Jin Fan PMCID: PMC2577735 Phylotyping and Functional Analysis of Two Ancient Human Microbiomes Raúl Y. Tito, Simone Macmil, Graham Wiley, Fares Najar, Lauren Cleeland, Chunmei Qu, Ping Wang, Frederic Romagne, Sylvain Leonard, Agustín Jiménez Ruiz, Karl Reinhard, Bruce A. Roe, and Cecil M. Lewis, Jr. PMCID: PMC2577302 Imitation of Body Movements Facilitated by Joint Attention through Eye Contact and Pointing in Japanese Monkey Mari Kumashiro, Osamu Yokoyama, and Hidetoshi Ishibashi PMCID: PMC2577368 Food Inequality Negatively Impacts Cardiac Health in Rabbits Fatemeh Heidary, Mohammad Reza Vaeze Mahdavi, Farshad Momeni, Bagher Minaii, Mehrdad Rogani, Nader Fallah, Roghayeh Heidary, and Reza Gharebaghi PMCID: PMC2577296 Bacillus anthracis Peptidoglycan Stimulates an Inflammatory Response in Monocytes through the p38 Mitogen-Activated Protein Kinase Pathway Marybeth Langer, Alexander Malykhin, Kenichiro Maeda, Kaushik Chakrabarty, Kelly S. Williamson, Christa L. Feasley, Christopher M. West, Jordan P. Metcalf, and K. Mark Coggeshall PMCID: PMC2577892 p53 Plays a Role in Mesenchymal Differentiation Programs, in a Cell Fate Dependent Manner Alina Molchadsky, Igor Shats, Naomi Goldfinger, Meirav Pevsner-Fischer, Melissa Olson, Ariel Rinon, Eldad Tzahor, Guillermina Lozano, Dov Zipori, Rachel Sarig, and Varda Rotter PMCID: PMC2577894 Empirical Comparison of Sources of Variation for FMRI Connectivity Analysis Baxter P. Rogers and John C. Gore PMCID: PMC2577732 Human Sclera Maintains Common Characteristics with Cartilage throughout Evolution Yuko Seko, Noriyuki Azuma, Yoriko Takahashi, Hatsune Makino, Toshiyuki Morito, Takeshi Muneta, Kenji Matsumoto, Hirohisa Saito, Ichiro Sekiya, and Akihiro Umezawa PMCID: PMC2579486 A Novel Assay to Trace Proliferation History In Vivo Reveals that Enhanced Divisional Kinetics Accompany Loss of Hematopoietic Stem Cell Self-Renewal Jens M. Nygren and David Bryder PMCID: PMC2580029 The Absolute Threshold of Colour Vision in the Horse Lina S. V. Roth, Anna Balkenius, and Almut Kelber PMCID: PMC2577923 Plasma Gelsolin Depletion and Circulating Actin in Sepsis—A Pilot Study Po-Shun Lee, Sanjay R. Patel, David C. Christiani, Ednan Bajwa, Thomas P. Stossel, and Aaron B. Waxman PMCID: PMC2577888 Genome-Scale Validation of Deep-Sequencing Libraries Dominic Schmidt, Rory Stark, Michael D. Wilson, Gordon D. Brown, and Duncan T. Odom PMCID: PMC2577887 Epidemiology of Doublet/Multiplet Mutations in Lung Cancers: Evidence that a Subset Arises by Chronocoordinate Events Zhenbin Chen, Jinong Feng, Carolyn H. Buzin, and Steve S. Sommer PMCID: PMC2579325 The Relative Influence of Competition and Prey Defenses on the Phenotypic Structure of Insectivorous Bat Ensembles in Southern Africa M. Corrie Schoeman and David S. Jacobs PMCID: PMC2579324 SGNP: An Essential Stress Granule/Nucleolar Protein Potentially Involved in 5.8s rRNA Processing/Transport Chun-Hong Zhu, Jinyong Kim, Jerry W. Shay, and Woodring E. Wright PMCID: PMC2579992 Anc1, a Protein Associated with Multiple Transcription Complexes, Is Involved in Postreplication Repair Pathway in S. cerevisiae Rachel L. Erlich, Rebecca C. Fry, Thomas J. Begley, Danielle L. Daee, Robert S. Lahue, and Leona D. Samson PMCID: PMC2579579 Natural Disease Resistance in Threatened Staghorn Corals Steven V. Vollmer and David I. Kline PMCID: PMC2579483 Inhibition of Expression in Escherichia coli of a Virulence Regulator MglB of Francisella tularensis Using External Guide Sequence Technology Gaoping Xiao, Eirik W. Lundblad, Mina Izadjoo, and Sidney Altman PMCID: PMC2579583 Using Auditory Steady State Responses to Outline the Functional Connectivity in the Tinnitus Brain Winfried Schlee, Nathan Weisz, Olivier Bertrand, Thomas Hartmann, and Thomas Elbert PMCID: PMC2579484 Reduction of DILP2 in Drosophila Triages a Metabolic Phenotype from Lifespan Revealing Redundancy and Compensation among DILPs Susan Broughton, Nazif Alic, Cathy Slack, Timothy Bass, Tomoatsu Ikeya, Giovanna Vinti, Anna Maria Tommasi, Yasmine Driege, Ernst Hafen, and Linda Partridge PMCID: PMC2579582 HLA-DM Mediates Epitope Selection by a “Compare-Exchange” Mechanism when a Potential Peptide Pool Is Available Andrea Ferrante, Matthew W. Anderson, Candice S. Klug, and Jack Gorski PMCID: PMC2580030 Improving Outcomes in Infants of HIV-Infected Women in a Developing Country Setting Francine Noel, Sapna Mehta, Yuwei Zhu, Patricia De Matteis Rouzier, Abdias Marcelin, Jian R. Shi, Claudine Nolte, Linda Severe, Marie Marcelle Deschamps, Daniel W. Fitzgerald, Warren D. Johnson, Peter F. Wright, and Jean W. Pape PMCID: PMC2580032 Randomization in Laboratory Procedure Is Key to Obtaining Reproducible Microarray Results Hyuna Yang, Christina A. Harrington, Kristina Vartanian, Christopher D. Coldren, Rob Hall, and Gary A. Churchill PMCID: PMC2579585 Treatment of Late Stage Disease in a Model of Arenaviral Hemorrhagic Fever: T-705 Efficacy and Reduced Toxicity Suggests an Alternative to Ribavirin Brian B. Gowen, Donald F. Smee, Min-Hui Wong, Jeffery O. Hall, Kie-Hoon Jung, Kevin W. Bailey, John R. Stevens, Yousuke Furuta, and John D. Morrey PMCID: PMC2579488 MicroRNA Expression Patterns and Function in Endodermal Differentiation of Human Embryonic Stem Cells Galit Tzur, Asaf Levy, Eti Meiri, Omer Barad, Yael Spector, Zvi Bentwich, Lina Mizrahi, Mark Katzenellenbogen, Etti Ben-Shushan, Benjamin E. Reubinoff, and Eithan Galun PMCID: PMC2581805 Structural Relationships between Highly Conserved Elements and Genes in Vertebrate Genomes Hong Sun, Geir Skogerbø, Zhen Wang, Wei Liu, and Yixue Li PMCID: PMC2579482 Targeting of β-Arrestin2 to the Centrosome and Primary Cilium: Role in Cell Proliferation Control Anahi Molla-Herman, Cedric Boularan, Rania Ghossoub, Mark G. H. Scott, Anne Burtey, Marion Zarka, Sophie Saunier, Jean-Paul Concordet, Stefano Marullo, and Alexandre Benmerah PMCID: PMC2579577 Estimated HIV Trends and Program Effects in Botswana John Stover, Boga Fidzani, Batho Chris Molomo, Themba Moeti, and Godfrey Musuka PMCID: PMC2579326 Clathrin and LRP-1-Independent Constitutive Endocytosis and Recycling of uPAR Katia Cortese, Macarena Sahores, Chris D. Madsen, Carlo Tacchetti, and Francesco Blasi PMCID: PMC2579578 HIV-1 Tat Activates Neuronal Ryanodine Receptors with Rapid Induction of the Unfolded Protein Response and Mitochondrial Hyperpolarization John P. Norman, Seth W. Perry, Holly M. Reynolds, Michelle Kiebala, Karen L. De Mesy Bentley, Margarita Trejo, David J. Volsky, Sanjay B. Maggirwar, Stephen Dewhurst, Eliezer Masliah, and Harris A. Gelbard PMCID: PMC2579580 Individually Unique Body Color Patterns in Octopus (Wunderpus photogenicus) Allow for Photoidentification Christine L. Huffard, Roy L. Caldwell, Ned DeLoach, David Wayne Gentry, Paul Humann, Bill MacDonald, Bruce Moore, Richard Ross, Takako Uno, and Stephen Wong PMCID: PMC2579581 Global Taxonomic Diversity of Anomodonts (Tetrapoda, Therapsida) and the Terrestrial Rock Record Across the Permian-Triassic Boundary Jörg Fröbisch PMCID: PMC2581439 Ordered Patterns of Cell Shape and Orientational Correlation
during Spontaneous Cell Migration Yusuke T. Maeda, Junya Inose, Miki Y. Matsuo, Suguru Iwaya, and Masaki Sano PMCID: PMC2581918 Quantification of Cell Edge Velocities and Traction Forces Reveals Distinct Motility Modules during Cell Spreading Benjamin J. Dubin-Thaler, Jake M. Hofman, Yunfei Cai, Harry Xenias, Ingrid Spielman, Anna V. Shneidman, Lawrence A. David, Hans-Günther Döbereiner, Chris H. Wiggins, and Michael P. Sheetz PMCID: PMC2581916 Alpha2 Macroglobulin-Like Is Essential for Liver Development in Zebrafish Sung-Kook Hong and Igor B. Dawid PMCID: PMC2581608 Membrane Potential Controls Adipogenic and Osteogenic Differentiation of Mesenchymal Stem Cells Sarah Sundelacruz, Michael Levin, and David L. Kaplan PMCID: PMC2581599 Altered PI3-Kinase/Akt Signalling in Skeletal Muscle of Young Men with Low Birth Weight Christine B. Jensen, Malgorzata S. Martin-Gronert, Heidi Storgaard, Sten Madsbad, Allan Vaag, and Susan E. Ozanne PMCID: PMC2580025 APC Activation Restores Functional CD4+CD25+ Regulatory T Cells in NOD Mice that Can Prevent Diabetes Development Jean N. Manirarora, Michele M. Kosiewicz, Sarah A. Parnell, and Pascale Alard PMCID: PMC2580026 Integrative MicroRNA and Proteomic Approaches Identify Novel Osteoarthritis Genes and Their Collaborative Metabolic and Inflammatory Networks Dimitrios Iliopoulos, Konstantinos N. Malizos, Pagona Oikonomou, and Aspasia Tsezou PMCID: PMC2582945 Rapid Experimental Evolution of Pesticide Resistance in C. elegans Entails No Costs and Affects the Mating System Patricia C. Lopes, Élio Sucena, M. Emília Santos, and Sara Magalhães PMCID: PMC2580027 Potential Relevance of α1-Adrenergic Receptor Autoantibodies in Refractory Hypertension Katrin Wenzel, Hannelore Haase, Gerd Wallukat, Wolfgang Derer, Sabine Bartel, Volker Homuth, Florian Herse, Norbert Hubner, Herbert Schulz, Marion Janczikowski, Carsten Lindschau, Christoph Schroeder, Stefan Verlohren, Ingo Morano, Dominik N. Muller, Friedrich C. Luft, Rainer Dietz, Ralf Dechend, and Peter Karczewski PMCID: PMC2580028 Sexual Behaviour and HPV Infections in 18 to 29 Year Old Women in the Pre-Vaccine Era in the Netherlands Charlotte H. Lenselink, Willem J. G. Melchers, Wim G. V. Quint, Annelies M. J. Hoebers, Jan C. M. Hendriks, Leon F. A. G. Massuger, and Ruud L. M. Bekkers PMCID: PMC2581437 Transgenerational Epigenetic Programming of the Brain Transcriptome and Anxiety Behavior Michael K. Skinner, Matthew D. Anway, Marina I. Savenkova, Andrea C. Gore, and David Crews PMCID: PMC2581440 The Trouble with Sliding Windows and the Selective Pressure in BRCA1 Karl Schmid and Ziheng Yang PMCID: PMC2581807 Self-Assembly in Monoelaidin Aqueous Dispersions: Direct Vesicles to Cubosomes Transition Anan Yaghmur, Peter Laggner, Mats Almgren, and Michael Rappolt PMCID: PMC2581612 Mycobacterium tuberculosis Glucosyl-3-Phosphoglycerate Synthase: Structure of a Key Enzyme in Methylglucose Lipopolysaccharide Biosynthesis Pedro José Barbosa Pereira, Nuno Empadinhas, Luciana Albuquerque, Bebiana Sá-Moura, Milton S. da Costa, and Sandra Macedo-Ribeiro PMCID: PMC2581804 A Reservoir of Drug-Resistant Pathogenic Bacteria in Asymptomatic Hosts Gabriel G. Perron, Sylvain Quessy, and Graham Bell PMCID: PMC2581806 Gene Expression Profiling in Limb-Girdle Muscular Dystrophy 2A Amets Sáenz, Margarita Azpitarte, Rubén Armañanzas, France Leturcq, Ainhoa Alzualde, Iñaki Inza, Federico García-Bragado, Gaspar De la Herran, Julián Corcuera, Ana Cabello, Carmen Navarro, Carolina De la Torre, Eduard Gallardo, Isabel Illa, and Adolfo López de Munain PMCID: PMC2582180 Antibody-Based Detection Tests for the Diagnosis of Helicobacter pylori Infection in Children: A Meta-Analysis Yelda A. Leal, Laura L. Flores, Laura B. García-Cortés, Roberto Cedillo-Rivera, and Javier Torres PMCID: PMC2582133 Notch Pathway Modulation on Bone Marrow-Derived Vascular Precursor Cells Regulates Their Angiogenic and Wound Healing Potential Francisco Caiado, Carla Real, Tânia Carvalho, and Sérgio Dias PMCID: PMC2582964 Maternal Plasma 25-Hydroxyvitamin D Concentrations and the Risk for Gestational Diabetes Mellitus Cuilin Zhang, Chunfang Qiu, Frank B. Hu, Robert M. David, Rob M. van Dam, Alexander Bralley, and Michelle A. Williams PMCID: PMC2582131 The Neural Basis of Object-Context Relationships on Aesthetic Judgment Ulrich Kirk PMCID: PMC2582437 Behavioural and Developmental Interventions for Autism Spectrum Disorder: A Clinical Systematic Review Maria B. Ospina, Jennifer Krebs Seida, Brenda Clark, Mohammad Karkhaneh, Lisa Hartling, Lisa Tjosvold, Ben Vandermeer, and Veronica Smith PMCID: PMC2582449 Ser649 and Ser650 Are the Major Determinants of Protein Kinase A-Mediated Activation of Human Hormone-Sensitive Lipase against Lipid Substrates Christian Krintel, Peter Osmark, Martin R. Larsen, Svante Resjö, Derek T. Logan, and Cecilia Holm PMCID: PMC2582450 Mass Mortality of Adult Male Subantarctic Fur Seals: Are Alien Mice the Culprits? P. J. Nico de Bruyn, Armanda D. S. Bastos, Candice Eadie, Cheryl A. Tosh, and Marthán N. Bester PMCID: PMC2582944 Extended Kalman Filter for Estimation of Parameters in Nonlinear State-Space Models of Biochemical Networks Xiaodian Sun, Li Jin, and Momiao Xiong PMCID: PMC2582954 Sensitive Detection of Colorectal Cancer in Peripheral Blood by Septin 9 DNA Methylation Assay Robert Grützmann, Bela Molnar, Christian Pilarsky, Jens K. Habermann, Peter M. Schlag, Hans D. Saeger, Stephan Miehlke, Thomas Stolz, Fabian Model, Uwe J. Roblick, Hans-Peter Bruch, Rainer Koch, Volker Liebenberg, Theo deVos, Xiaoling Song, Robert H. Day, Andrew Z. Sledziewski, and Catherine Lofton-Day PMCID: PMC2582436 Does Selection against Transcriptional Interference Shape Retroelement-Free Regions in Mammalian Genomes? Tobias Mourier and Eske Willerslev PMCID: PMC2582637 The LIM-Only Protein FHL2 Mediates Ras-Induced Transformation through Cyclin D1 and p53 Pathways Charlotte Labalette, Yann Nouët, Florence Levillayer, Carolina Armengol, Claire-Angélique Renard, Guillaume Soubigou, Tian Xia, Marie-Annick Buendia, and Yu Wei PMCID: PMC2583050 GP-9s Are Ubiquitous Proteins Unlikely Involved in Olfactory Mediation of Social Organization in the Red Imported Fire Ant, Solenopsis invicta Walter S. Leal and Yuko Ishida PMCID: PMC2582448 BicaudalD Actively Regulates Microtubule Motor Activity in Lipid Droplet Transport Kristoffer S. Larsen, Jing Xu, Silvia Cermelli, Zhanyong Shu, and Steven P. Gross PMCID: PMC2582182 Clostridium perfringens Delta Toxin Is Sequence Related to Beta Toxin, NetB, and Staphylococcus Pore-Forming Toxins, but Shows Functional Differences Maria Manich, Oliver Knapp, Maryse Gibert, Elke Maier, Colette Jolivet-Reynaud, Blandine Geny, Roland Benz, and Michel R. Popoff PMCID: PMC2583947 Detecting Clusters of Mutations Tong Zhou, Peter J. Enyeart, and Claus O. Wilke PMCID: PMC2582452 A Green Fluorescent Protein with Photoswitchable Emission from the Deep Sea Alexander Vogt, Cecilia D'Angelo, Franz Oswald, Andrea Denzel, Charles H. Mazel, Mikhail V. Matz, Sergey Ivanchenko, G. Ulrich Nienhaus, and Jörg Wiedenmann PMCID: PMC2582951 Thyroid Cancer Imaging In Vivo by Targeting the Anti-Apoptotic Molecule Galectin-3 Armando Bartolazzi, Calogero D'Alessandria, Maria Gemma Parisella, Alberto Signore, Fabrizio Del Prete, Luca Lavra, Sten Braesch-Andersen, Roberto Massari, Carlo Trotta, Alessandro Soluri, Salvatore Sciacchitano, and Francesco Scopinaro PMCID: PMC2582451 c-Myc Is Required for Maintenance of Glioma Cancer Stem Cells Jialiang Wang, Hui Wang, Zhizhong Li, Qiulian Wu, Justin D. Lathia, Roger E. McLendon, Anita B. Hjelmeland, and Jeremy N. Rich PMCID: PMC2582454 Runx Expression Is Mitogenic and Mutually Linked to Wnt Activity in Blastula-Stage Sea Urchin Embryos Anthony J. Robertson, Alison Coluccio, Peter Knowlton, Carrie Dickey-Sims, and James A. Coffman PMCID: PMC2582955 ApoB100-LDL Acts as a Metabolic Signal from Liver to Peripheral Fat Causing Inhibition of Lipolysis in Adipocytes Josefin Skogsberg, Andrea Dicker, Mikael Rydén, Gaby Åström, Roland Nilsson, Hasanuzzaman Bhuiyan, Sigurd Vitols, Aline Mairal, Dominique Langin, Peteris Alberts, Erik Walum, Jesper Tegnér, Anders Hamsten, Peter Arner, and Johan Björkegren PMCID: PMC2582480 Age-Related Reference Intervals of the Main Biochemical and Hematological Parameters in C57BL/6J, 129SV/EV and C3H/HeJ Mouse Strains Cristina Mazzaccara, Giuseppe Labruna, Gennaro Cito, Marzia Scarfò, Mario De Felice, Lucio Pastore, and Lucia Sacchetti PMCID: PMC2582346 Non-Native R1 Substitution in the S4 Domain Uniquely Alters Kv4.3 Channel Gating Matthew R. Skerritt and Donald L. Campbell PMCID: PMC2582947 The Marine-Derived Oligosaccharide Sulfate (MdOS), a Novel Multiple Tyrosine Kinase Inhibitor, Combats Tumor Angiogenesis both In Vitro and In Vivo Jingui Ma, Xianliang Xin, Linghua Meng, Linjiang Tong, Liping Lin, Meiyu Geng, and Jian Ding PMCID: PMC2582481 Copying and Evolution of Neuronal Topology Chrisantha Fernando, K. K. Karishma, and Eörs Szathmáry PMCID: PMC2582483 Flow-Cytometric Phosphoprotein Analysis Reveals Agonist and Temporal Differences in Responses of Murine Hematopoietic Stem/Progenitor Cells Demetrios Kalaitzidis and Benjamin G. Neel PMCID: PMC2582484 A Constructed Alkaline Consortium and Its Dynamics in Treating Alkaline Black Liquor with Very High Pollution Load Chunyu Yang, Guangchun Cao, Yang Li, Xiaojun Zhang, Hongyan Ren, Xia Wang, Jinhui Feng, Liping Zhao, and Ping Xu PMCID: PMC2582485 Pix Proteins and the Evolution of Centrioles Hugh R. Woodland and Andrew M. Fry PMCID: PMC2582488 Diverse Expression Patterns of Subgroups of the rif Multigene Family during Plasmodium falciparum Gametocytogenesis Michaela Petter, Insa Bonow, and Mo-Quen Klinkert PMCID: PMC2582490 FRET Imaging of Hemoglobin Concentration in Plasmodium falciparum-Infected Red Cells Alessandro Esposito, Teresa Tiffert, Jakob M. A. Mauritz, Simon Schlachter, Lawrence H. Bannister, Clemens F. Kaminski, and Virgilio L. Lew PMCID: PMC2582953 Coding of Visual Object Features and Feature Conjunctions in the Human Brain Jasna Martinovic, Thomas Gruber, and Matthias M. Müller PMCID: PMC2582493 Convergence among Non-Sister Dendritic Branches: An Activity-Controlled Mean to Strengthen Network Connectivity Pablo Blinder, Joshua Cove, Maytal Foox, and Danny Baranes PMCID: PMC2582457 A Point Mutation in Translation Initiation Factor 2B Leads to a Continuous Hyper Stress State in Oligodendroglial-Derived Cells Liraz Kantor, Dalia Pinchasi, Michelle Mintz, Yetrib Hathout, Adeline Vanderver, and Orna Elroy-Stein PMCID: PMC2583043 Effectiveness of Cellulose Sulfate Vaginal Gel for the Prevention of HIV Infection: Results of a Phase III Trial in Nigeria Vera Halpern, Folasade Ogunsola, Orikomaba Obunge, Chin-Hua Wang, Nneka Onyejepu, Oyinola Oduyebo, Doug Taylor, Linda McNeil, Neha Mehta, John Umo-Otong, Sakiru Otusanya, Tania Crucitti, and Said Abdellati PMCID: PMC2582655 Just-in-Time Information Improved Decision-Making in Primary Care: A Randomized Controlled Trial Jessie McGowan, William Hogg, Craig Campbell, and Margo Rowan PMCID: PMC2583045 Transient Responses to Rapid Changes in Mean and Variance in Spiking Models Peyman Khorsand and Frances Chance PMCID: PMC2582948 Functional Characterization of a Newly Identified Group B Streptococcus Pullulanase Eliciting Antibodies Able to Prevent Alpha-Glucans Degradation Isabella Santi, Alfredo Pezzicoli, Mattia Bosello, Francesco Berti, Massimo Mariani, John L. Telford, Guido Grandi, and Marco Soriani PMCID: PMC2582482 “The Good into the Pot, the Bad into the Crop!”—A New Technology to Free Stem Cells from Feeder Cells Annette Schneider, Dimitry Spitkovsky, Peter Riess, Marek Molcanyi, Naidu Kamisetti, Marc Maegele, Jürgen Hescheler, and Ute Schaefer PMCID: PMC2582950 Viral Load, Clinical Disease Severity and Cellular Immune Responses in Primary Varicella Zoster Virus Infection in Sri Lanka Gathsaurie Neelika Malavige, Louise Jones, S. D. Kamaladasa, A. Wijewickrama, S. L. Seneviratne, Antony P. Black, and Graham S. Ogg PMCID: PMC2582489 rBCG Induces Strong Antigen-Specific T Cell Responses in Rhesus Macaques in a Prime-Boost Setting with an Adenovirus 35 Tuberculosis Vaccine Vector Isabelle Magalhaes, Donata R. Sizemore, Raija K. Ahmed, Stefanie Mueller, Lena Wehlin, Charles Scanga, Frank Weichold, Giulia Schirru, Maria Grazia Pau, Jaap Goudsmit, Sharon Kühlmann-Berenzon, Mats Spångberg, Jan Andersson, Hans Gaines, Rigmor Thorstensson, Yasir A. W. Skeiky, Jerry Sadoff, and Markus Maeurer PMCID: PMC2582491 Disruption of Nrf2, a Key Inducer of Antioxidant Defenses, Attenuates ApoE-Mediated Atherosclerosis in Mice Thomas E. Sussan, Jonathan Jun, Rajesh Thimmulappa, Djahida Bedja, Maria Antero, Kathleen L. Gabrielson, Vsevolod Y. Polotsky, and Shyam Biswal PMCID: PMC2582492 Is Task-Irrelevant Learning Really Task-Irrelevant? Aaron R. Seitz and Takeo Watanabe PMCID: PMC2583048 Differential Roles of the PKC Novel Isoforms, PKCδ and PKCε, in Mouse and Human Platelets Catherine J. Pears, Kelly Thornber, Jocelyn M. Auger, Craig E. Hughes, Beata Grygielska, Majd B. Protty, Andrew C. Pearce, and Steve P. Watson PMCID: PMC2583049 Comprehensive Dissection of PDGF-PDGFR Signaling Pathways in PDGFR Genetically Defined Cells Erxi Wu, Nathan Palmer, Ze Tian, Annie P. Moseman, Michal Galdzicki, Xuetao Wang, Bonnie Berger, Hongbing Zhang, and Isaac S. Kohane PMCID: PMC2582946 When Does Reward Maximization Lead to Matching Law? Yutaka Sakai and Tomoki Fukai PMCID: PMC2582656 Startling Mosaicism of the Y-Chromosome and Tandem Duplication of the SRY and DAZ Genes in Patients with Turner Syndrome Sanjay Premi, Jyoti Srivastava, Ganesan Panneer, and Sher Ali PMCID: PMC2582957 Mosaic DNA Imports with Interspersions of Recipient Sequence after Natural Transformation of Helicobacter pylori Stefan Kulick, Claudia Moccia, Xavier Didelot, Daniel Falush, Christian Kraft, and Sebastian Suerbaum PMCID: PMC2582958 Redundant Mechanisms for Regulation of Midline Crossing in Drosophila Giorgio F. Gilestro PMCID: PMC2583054 Interictal Dysfunction of a Brainstem Descending Modulatory Center in Migraine Patients Eric A. Moulton, Rami Burstein, Shannon Tully, Richard Hargreaves, Lino Becerra, and David Borsook PMCID: PMC2582961 Crystal Structures of the FAK Kinase in Complex with TAE226 and Related Bis-Anilino Pyrimidine Inhibitors Reveal a Helical DFG Conformation Daniel Lietha and Michael J. Eck PMCID: PMC2582962 VHL Type 2B Mutations Retain VBC Complex Form and Function Kathryn E. Hacker, Caroline Martz Lee, and W. Kimryn Rathmell PMCID: PMC2583047 Shortest-Path Network Analysis Is a Useful Approach toward Identifying Genetic Determinants of Longevity J. R. Managbanag, Tarynn M. Witten, Danail Bonchev, Lindsay A. Fox, Mitsuhiro Tsuchiya, Brian K. Kennedy, and Matt Kaeberlein PMCID: PMC2583956 Identification and Characterization of a New Orthoreovirus from Patients with Acute Respiratory Infections Kaw Bing Chua, Kenny Voon, Gary Crameri, Hui Siu Tan, Juliana Rosli, Jennifer A. McEachern, Sivagami Suluraju, Meng Yu, and Lin-Fa Wang PMCID: PMC2583042 Articles by Latin American Authors in Prestigious Journals Have Fewer Citations Rogerio Meneghini, Abel L. Packer, and Lilian Nassi-Calò PMCID: PMC2583044 Systematic NMR Analysis of Stable Isotope Labeled Metabolite Mixtures in Plant and Animal Systems: Coarse Grained Views of Metabolic Pathways Eisuke Chikayama, Michitaka Suto, Takashi Nishihara, Kazuo Shinozaki, Takashi Hirayama, and Jun Kikuchi PMCID: PMC2583929 Integrated Ecosystem Assessment: Lake Ontario Water Management Mark B. Bain, Nuanchan Singkran, and Katherine E. Mills PMCID: PMC2583052 Object Segmentation from Motion Discontinuities and Temporal
Occlusions–A Biologically Inspired Model Cornelia Beck, Thilo Ognibeni, and Heiko Neumann PMCID: PMC2586919 Whole Body Mechanics of Stealthy Walking in Cats Kristin L. Bishop, Anita K. Pai, and Daniel Schmitt PMCID: PMC2583958 p16 Mutation Spectrum in the Premalignant Condition Barrett's Esophagus Thomas G. Paulson, Patricia C. Galipeau, Lianjun Xu, Heather D. Kissel, Xiaohong Li, Patricia L. Blount, Carissa A. Sanchez, Robert D. Odze, and Brian J. Reid PMCID: PMC2585012 Trans-Translation in Helicobacter pylori: Essentiality of Ribosome Rescue and Requirement of Protein Tagging for Stress Resistance and Competence Marie Thibonnier, Jean-Michel Thiberge, and Hilde De Reuse PMCID: PMC2584231 Lipopolysaccharide Diversity Evolving in Helicobacter pylori Communities through Genetic Modifications in Fucosyltransferases Christina Nilsson, Anna Skoglund, Anthony P. Moran, Heidi Annuk, Lars Engstrand, and Staffan Normark PMCID: PMC2583950 Hematopoietic Stem Cells Contribute to Lymphatic Endothelium Shuguang Jiang, Alexis S. Bailey, Devorah C. Goldman, John R. Swain, Melissa H. Wong, Philip R. Streeter, and William H. Fleming PMCID: PMC2583952 Evaluation of Clustering and Genotype Distribution for Replication in Genome Wide Association Studies: The Age-Related Eye Disease Study Albert O. Edwards, Brooke L. Fridley, Katherine M. James, Anil S. Sharma, Julie M. Cunningham, and Nirubol Tosakulwong PMCID: PMC2583911 The Chromosomal Passenger Complex and a Mitotic Kinesin Interact with the Tousled-Like Kinase in Trypanosomes to Regulate Mitosis and Cytokinesis Ziyin Li, Takashi Umeyama, and Ching C. Wang PMCID: PMC2583928 Mitochondrial Disease in Autism Spectrum Disorder Patients: A Cohort Analysis Jacqueline R. Weissman, Richard I. Kelley, Margaret L. Bauman, Bruce H. Cohen, Katherine F. Murray, Rebecca L. Mitchell, Rebecca L. Kern, and Marvin R. Natowicz PMCID: PMC2584230 Influence of Olfactory Epithelium on Mitral/Tufted Cell Dendritic Outgrowth Ha Tran, Huaiyang Chen, Andreas Walz, Jamie C. Posthumus, and Qizhi Gong PMCID: PMC2583930 The Major Surface-Associated Saccharides of Klebsiella pneumoniae Contribute to Host Cell Association Abigail Clements, Fabien Gaboriaud, Jérôme F. L. Duval, Jacinta L. Farn, Adam W. Jenney, Trevor Lithgow, Odilia L. C. Wijburg, Elizabeth L. Hartland, and Richard A. Strugnell PMCID: PMC2583945 Properties and Distribution of Pure GA-Sequences of Mammalian Genomes Guenter Albrecht-Buehler PMCID: PMC2585066 Efficacy of Selective Arterial Embolisation for the Treatment of Life-Threatening Post-Partum Haemorrhage in a Large Population Cyril Touboul, Wassim Badiou, Julien Saada, Jean-Pierre Pelage, Didier Payen, Eric Vicaut, Denis Jacob, and Arash Rafii PMCID: PMC2583949 NMRDyn: A Program for NMR Relaxation Studies of Protein Association Conan K. Wang, Horst Joachim Schirra, and David J. Craik PMCID: PMC2583948 Tubulin Dimers Oligomerize before Their Incorporation into Microtubules Julien Mozziconacci, Linda Sandblad, Malte Wachsmuth, Damian Brunner, and Eric Karsenti PMCID: PMC2584370 The Zinc Finger SET Domain Gene Prdm14 Is Overexpressed in Lymphoblastic Lymphomas with Retroviral Insertions at Evi32 E. J. Dettman and Monica J. Justice PMCID: PMC2584371 Modulation of the NF-κB Pathway by Bordetella pertussis Filamentous Hemagglutinin Tzvia Abramson, Hassya Kedem, and David A. Relman PMCID: PMC2584786 An Infinitely Expandable Cloning Strategy plus Repeat-Proof PCR for Working with Multiple shRNA Glen John Mcintyre, Jennifer Lynne Groneman, Anna Tran, and Tanya Lynn Applegate PMCID: PMC2584233 Acquisition and Evolution of Plant Pathogenesis–Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas Hong Lu, Prabhu Patil, Marie-Anne Van Sluys, Frank F. White, Robert P. Ryan, J. Maxwell Dow, Pablo Rabinowicz, Steven L. Salzberg, Jan E. Leach, Ramesh Sonti, Volker Brendel, and Adam J. Bogdanove PMCID: PMC2585010 Multi-Stability and Pattern-Selection in Oscillatory Networks with Fast Inhibition and Electrical Synapses Tiaza Bem, Pierre Meyrand, Pascal Branchereau, and John Hallam PMCID: PMC2584369 Mining a Sea of Data: Deducing the Environmental Controls of Ocean Chlorophyll Andrew J. Irwin and Zoe V. Finkel PMCID: PMC2584232 Corrections Correction: Deficiency of FLCN in Mouse Kidney Led to Development of Polycystic Kidneys and Renal Neoplasia Jindong Chen, Kunihiko Futami, David Petillo, Jun Peng, Pengfei Wang, Jared Knol, Yan Li, Sok-Kean Khoo, Dan Huang, Chao-Nan Qian, Ping Zhao, Karl Dykema, Racheal Zhang, Brian Cao, Ximing J. Yang, Kyle Furge, Bart O. Williams, and Bin Tean Teh PMCID: PMC2585738 Corrects: Jindong Chen, et al. Deficiency of FLCN in Mouse Kidney Led to Development of Polycystic Kidneys and Renal Neoplasia. PLoS ONE. 2008; 3(10): e3581. Correction: Tumor Necrosis Factor Receptor-Associated Factor 4 Is a Dynamic Tight Junction-Related Shuttle Protein Involved in Epithelium Homeostasis Valérie Kédinger, Fabien Alpy, Aurélie Baguet, Myriam Polette, Isabelle Stoll, Marie-Pierre Chenard, Catherine Tomasetto, and Marie-Christine Rio PMCID: PMC2590851 Corrects: Valérie Kédinger, et al. Tumor Necrosis Factor Receptor-Associated Factor 4 Is a Dynamic Tight Junction-Related Shuttle Protein Involved in Epithelium Homeostasis. PLoS ONE. 2008; 3(10): e3518. Correction: Discovery of a Distinct Superfamily of Kunitz-Type Toxin (KTT) from Tarantulas Chun-Hua Yuan, Quan-Yuan He, Kuan Peng, Jian-Bo Diao, Li-Ping Jiang, Xing Tang, and Song-Ping Liang PMCID: PMC2590747 Corrects: Chun-Hua Yuan, et al. Discovery of a Distinct Superfamily of Kunitz-Type Toxin (KTT) from Tarantulas. PLoS ONE. 2008; 3(10): e3414. Correction: Recognition Profile of Emotions in Natural and Virtual Faces Miriam Dyck, Maren Winbeck, Susanne Leiberg, Yuhan Chen, Ruben C. Gur, and Klaus Mathiak PMCID: PMC2590715 Corrects: Miriam Dyck, et al. Recognition Profile of Emotions in Natural and Virtual Faces. PLoS ONE. 2008; 3(11): e3628. Correction: HLA-Driven Convergence of HIV-1 Viral Subtypes B and F Toward the Adaptation to Immune Responses in Human Populations Dario Alberto Dilernia, Leandro Jones, Sabrina Rodriguez, Gabriela Turk, Andrea E. Rubio, Sandra Pampuro, Manuel Gomez-Carrillo, Christian T. Bautista, Gabriel Deluchi, Jorge Benetucci, María Beatriz Lasala, Leonardo Lourtau, Marcelo Horacio Losso, Héctor Perez, Pedro Cahn, and Horacio Salomón PMCID: PMC2583282 Corrects: Dario Alberto Dilernia, et al. HLA-Driven Convergence of HIV-1 Viral Subtypes B and F Toward the Adaptation to Immune Responses in Human Populations. PLoS ONE. 2008; 3(10): e3429. Correction: PfRH5: A Novel Reticulocyte-Binding Family Homolog of Plasmodium falciparum that Binds to the Erythrocyte, and an Investigation of Its Receptor Marilis Rodriguez, Sara Lustigman, Estrella Montero, Yelena Oksov, and Cheryl A. Lobo PMCID: PMC2586816 Corrects: Marilis Rodriguez, et al. PfRH5: A Novel Reticulocyte-Binding Family Homolog of Plasmodium falciparum that Binds to the Erythrocyte, and an Investigation of Its Receptor. PLoS ONE. 2008; 3(10): e3300. Correction: Deficiency of FLCN in Mouse Kidney Led to Development of Polycystic Kidneys and Renal Neoplasia Jindong Chen, Kunihiko Futami, David Petillo, Jun Peng, Pengfei Wang, Jared Knol, Yan Li, Sok-Kean Khoo, Dan Huang, Chao-Nan Qian, Ping Zhao, Karl Dykema, Racheal Zhang, Brian Cao, Ximing J. Yang, Kyle Furge, Bart O. Williams, and Bin Tean Teh PMCID: PMC2585737 Corrects: Jindong Chen, et al. Deficiency of FLCN in Mouse Kidney Led to Development of Polycystic Kidneys and Renal Neoplasia. PLoS ONE. 2008; 3(10): e3581. Correction: Discovery of a Distinct Superfamily of Kunitz-Type Toxin (KTT) from Tarantulas Chun-Hua Yuan, Quan-Yuan He, Kuan Peng, Jian-Bo Diao, Li-Ping Jiang, Xing Tang, and Song-Ping Liang PMCID: PMC2590791 Corrects: Chun-Hua Yuan, et al. Discovery of a Distinct Superfamily of Kunitz-Type Toxin (KTT) from Tarantulas. PLoS ONE. 2008; 3(10): e3414. Correction: High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs Jonathan Livny, Hidayat Teonadi, Miron Livny, and Matthew K. Waldor PMCID: PMC2585787 Corrects: Jonathan Livny, et al. High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs. PLoS ONE. 2008; 3(9): e3197. Correction: The Zinc Transporter SLC39A13/ZIP13 Is Required for Connective Tissue Development; Its Involvement in BMP/TGF-β Signaling Pathways Toshiyuki Fukada, Natacha Civic, Tatsuya Furuichi, Shinji Shimoda, Kenji Mishima, Hiroyuki Higashiyama, Yayoi Idaira, Yoshinobu Asada, Hiroshi Kitamura, Satoru Yamasaki, Shintaro Hojyo, Manabu Nakayama, Osamu Ohara, Haruhiko Koseki, Heloisa G. dos Santos, Luisa Bonafe, Russia Ha-Vinh, Andreas Zankl, Sheila Unger, Marius E. Kraenzlin, Jacques S. Beckmann, Ichiro Saito, Carlo Rivolta, Shiro Ikegawa, Andrea Superti-Furga, and Toshio Hirano PMCID: PMC2586721 Corrects: Toshiyuki Fukada, et al. The Zinc Transporter SLC39A13/ZIP13 Is Required for Connective Tissue Development; Its Involvement in BMP/TGF-β Signaling Pathways. PLoS ONE. 2008; 3(11): e3642. Correction: Anthrax Edema Toxin Modulates PKA- and CREB-Dependent Signaling in Two Phases Andrea Puhar, Federica Dal Molin, Stéphanie Horvath, Daniel Ladant, and Cesare Montecucco PMCID: PMC2583280 Corrects: Andrea Puhar, et al. Anthrax Edema Toxin Modulates PKA- and CREB-Dependent Signaling in Two Phases. PLoS ONE. 2008; 3(10): e3564. Correction: Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding Changes in Transcript Abundance David G. Hendrickson, Daniel J. Hogan, Daniel Herschlag, James E. Ferrell, and Patrick O. Brown PMCID: PMC2585320 Corrects: David G. Hendrickson, et al. Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding Changes in Transcript Abundance. PLoS ONE. 2008; 3(5): e2126. Correction: Discovery of a Distinct Superfamily of Kunitz-Type Toxin (KTT) from Tarantulas Chun-Hua Yuan, Quan-Yuan He, Kuan Peng, Jian-Bo Diao, Li-Ping Jiang, Xing Tang, and Song-Ping Liang PMCID: PMC2590676 Corrects: Chun-Hua Yuan, et al. Discovery of a Distinct Superfamily of Kunitz-Type Toxin (KTT) from Tarantulas. PLoS ONE. 2008; 3(10): e3414. |
