| | Research Articles A Molecular Ruler for Measuring Quantitative Distance Distributions Rebecca S. Mathew-Fenn, Rhiju Das, Joshua A. Silverman, Peter A. Walker, and Pehr A. B. Harbury PMCID: PMC2566812 Practice Induces Function-Specific Changes in Brain Activity Tamar R. van Raalten, Nick F. Ramsey, Jeff Duyn, and Johan M. Jansma PMCID: PMC2556384 Mitochondrial DNA Evidence for a Diversified Origin of Workers Building Mausoleum for First Emperor of China Zhi Xu, Fan Zhang, Bosong Xu, Jingze Tan, Shilin Li, Chunxiang Li, Hui Zhou, Hong Zhu, Jun Zhang, Qingbo Duan, and Li Jin PMCID: PMC2557057 Social Modulation during Songbird Courtship Potentiates Midbrain Dopaminergic Neurons Ya-Chun Huang and Neal A. Hessler PMCID: PMC2533700 Dynamics of Alliance Formation and the Egalitarian Revolution Sergey Gavrilets, Edgar A. Duenez-Guzman, and Michael D. Vose PMCID: PMC2547893 Towards a General Theory of Neural Computation Based on Prediction by Single Neurons Christopher D. Fiorillo PMCID: PMC2553191 Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication Ji'An Pan, Xiaoxue Peng, Yajing Gao, Zhilin Li, Xiaolu Lu, Yingzhao Chen, Musarat Ishaq, Dan Liu, Marta L. DeDiego, Luis Enjuanes, and Deyin Guo PMCID: PMC2553179 PfRH5: A Novel Reticulocyte-Binding Family Homolog of Plasmodium falciparum that Binds to the Erythrocyte, and an Investigation of Its Receptor Marilis Rodriguez, Sara Lustigman, Estrella Montero, Yelena Oksov, and Cheryl A. Lobo PMCID: PMC2553180 Genetic Disruption of Both Tryptophan Hydroxylase Genes Dramatically Reduces Serotonin and Affects Behavior in Models Sensitive to Antidepressants Katerina V. Savelieva, Shulei Zhao, Vladimir M. Pogorelov, Indrani Rajan, Qi Yang, Emily Cullinan, and Thomas H. Lanthorn PMCID: PMC2565062 P38 MAP Kinase Signaling Is Required for the Conversion of CD4+CD25− T Cells into iTreg Samuel Huber, Jörg Schrader, Gerhard Fritz, Katrin Presser, Steffen Schmitt, Ari Waisman, Stefan Lüth, Manfred Blessing, Johannes Herkel, and Christoph Schramm PMCID: PMC2553190 Targeted Deletion of Neuropeptide Y (NPY) Modulates Experimental Colitis Bindu Chandrasekharan, Vanitha Bala, Vasantha L. Kolachala, Matam Vijay-Kumar, Dean Jones, Andrew T. Gewirtz, Shanthi V. Sitaraman, and Shanthi Srinivasan PMCID: PMC2561053 Resting Regulatory CD4 T Cells: A Site of HIV Persistence in Patients on Long-Term Effective Antiretroviral Therapy Tu-Anh Tran, Marie-Ghislaine de Goër de Herve, Houria Hendel-Chavez, Bamory Dembele, Emilie Le Névot, Karim Abbed, Coralie Pallier, Cécile Goujard, Jacques Gasnault, Jean-François Delfraissy, Anne-Marie Balazuc, and Yassine Taoufik PMCID: PMC2551739 Promoter DNA Hypermethylation and Gene Repression in Undifferentiated Arabidopsis Cells María Berdasco, Rubén Alcázar, María Victoria García-Ortiz, Esteban Ballestar, Agustín F. Fernández, Teresa Roldán-Arjona, Antonio F. Tiburcio, Teresa Altabella, Nicolas Buisine, Hadi Quesneville, Antoine Baudry, Loïc Lepiniec, Miguel Alaminos, Roberto Rodríguez, Alan Lloyd, Vincent Colot, Judith Bender, María Jesús Canal, Manel Esteller, and Mario F. Fraga PMCID: PMC2556100 Amerindian Helicobacter pylori Strains Go Extinct, as European Strains Expand Their Host Range Maria G. Domínguez-Bello, Maria E. Pérez, Maria C. Bortolini, Francisco M. Salzano, Luis R. Pericchi, Orlisbeth Zambrano-Guzmán, and Bodo Linz PMCID: PMC2551748 AA-Amyloidosis Can Be Transferred by Peripheral Blood Monocytes Jana Sponarova, Sofia N. Nyström, and Gunilla T. Westermark PMCID: PMC2553266 Investigating the Locomotion of the Sandfish in Desert Sand Using NMR-Imaging Werner Baumgartner, Florian Fidler, Agnes Weth, Martin Habbecke, Peter Jakob, Christoph Butenweg, and Wolfgang Böhme PMCID: PMC2561000 Immortalization of Human Neural Stem Cells with the c-Myc Mutant T58A Lidia De Filippis, Daniela Ferrari, Laura Rota Nodari, Bruno Amati, Evan Snyder, and Angelo Luigi Vescovi PMCID: PMC2561001 Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L) Juan C. Motamayor, Philippe Lachenaud, Jay Wallace da Silva e Mota, Rey Loor, David N. Kuhn, J. Steven Brown, and Raymond J. Schnell PMCID: PMC2551746 MUC1* Mediates the Growth of Human Pluripotent Stem Cells Sherry T. Hikita, Kenneth S. Kosik, Dennis O. Clegg, and Cynthia Bamdad PMCID: PMC2553196 Clathrin- and Caveolin-Independent Entry of Human Papillomavirus Type 16—Involvement of Tetraspanin-Enriched Microdomains (TEMs) Gilles Spoden, Kirsten Freitag, Matthias Husmann, Klaus Boller, Martin Sapp, Carsten Lambert, and Luise Florin PMCID: PMC2561052 Pathologic Prion Protein Infects Cells by Lipid-Raft Dependent Macropinocytosis Jehangir S. Wadia, Monica Schaller, R. Anthony Williamson, and Steven F. Dowdy PMCID: PMC2671965 Chemical Addressability of Ultraviolet-Inactivated Viral Nanoparticles (VNPs) Chris Rae, Kristopher J. Koudelka, Giuseppe Destito, Mayra N. Estrada, Maria J. Gonzalez, and Marianne Manchester PMCID: PMC2551747 Egr-1 Regulates Autophagy in Cigarette Smoke-Induced Chronic Obstructive Pulmonary Disease Zhi-Hua Chen, Hong Pyo Kim, Frank C. Sciurba, Seon-Jin Lee, Carol Feghali-Bostwick, Donna B. Stolz, Rajiv Dhir, Rodney J. Landreneau, Mathew J. Schuchert, Samuel A. Yousem, Kiichi Nakahira, Joseph M. Pilewski, Janet S. Lee, Yingze Zhang, Stefan W. Ryter, and Augustine M. K. Choi PMCID: PMC2552992 Symphysiotomy in Zimbabwe; Postoperative Outcome, Width of the Symphysis Joint, and Knowledge, Attitudes and Practice among Doctors and Midwives Hege Langli Ersdal, Douwe A. A. Verkuyl, Kenneth Björklund, and Staffan Bergström PMCID: PMC2556395 Telomerase Deficiency Affects the Formation of Chromosomal Translocations by Homologous Recombination in Saccharomyces cerevisiae Damon H. Meyer and Adam M. Bailis PMCID: PMC2553005 Effects of Natalizumab Treatment on Foxp3+ T Regulatory Cells Max-Philipp Stenner, Anne Waschbisch, Dorothea Buck, Sebastian Doerck, Hermann Einsele, Klaus V. Toyka, and Heinz Wiendl PMCID: PMC2553177 Loss of Cannabinoid Receptor CB1 Induces Preterm Birth Haibin Wang, Huirong Xie, and Sudhansu K. Dey PMCID: PMC2553193 Cerebrospinal Fluid Dendritic Cells Infiltrate the Brain Parenchyma and Target the Cervical Lymph Nodes under Neuroinflammatory Conditions Eric Hatterer, Monique Touret, Marie-Françoise Belin, Jérôme Honnorat, and Serge Nataf PMCID: PMC2552991 Meltrin β/ADAM19 Interacting with EphA4 in Developing Neural Cells Participates in Formation of the Neuromuscular Junction Norihiro Yumoto, Shuji Wakatsuki, Tomohiro Kurisaki, Yoshinobu Hara, Noriko Osumi, Jonas Frisén, and Atsuko Sehara-Fujisawa PMCID: PMC2552171 Robust Intrapulmonary CD8 T Cell Responses and Protection with an Attenuated N1L Deleted Vaccinia Virus Anuja Mathew, Joel O'Bryan, William Marshall, Girish J. Kotwal, Masanori Terajima, Sharone Green, Alan L. Rothman, and Francis A. Ennis PMCID: PMC2553181 Non-Opsonic Phagocytosis of Legionella pneumophila by Macrophages Is Mediated by Phosphatidylinositol 3-Kinase Souvenir D. Tachado, Mustapha M. Samrakandi, and Jeffrey D. Cirillo PMCID: PMC2553182 The Evolution of HoxD-11 Expression in the Bird Wing: Insights from Alligator mississippiensis Alexander O. Vargas, Tiana Kohlsdorf, John F. Fallon, John VandenBrooks, and Günter P. Wagner PMCID: PMC2553264 Polymicrobial Nature of Chronic Diabetic Foot Ulcer Biofilm Infections Determined Using Bacterial Tag Encoded FLX Amplicon Pyrosequencing (bTEFAP) Scot E. Dowd, Randall D. Wolcott, Yan Sun, Trevor McKeehan, Ethan Smith, and Daniel Rhoads PMCID: PMC2556099 Reference Ranges for the Clinical Laboratory Derived from a Rural Population in Kericho, Kenya Rukia S. Kibaya, Christian T. Bautista, Frederick K. Sawe, Douglas N. Shaffer, Warren B. Sateren, Paul T. Scott, Nelson L. Michael, Merlin L. Robb, Deborah L. Birx, and Mark S. de Souza PMCID: PMC2553265 Genetic Dissimilarity between Mates, but Not Male Heterozygosity, Influences Divorce in Schistosomes Sophie Beltran, Frank Cézilly, and Jérôme Boissier PMCID: PMC2553268 Evolution of the Aging Brain Transcriptome and Synaptic Regulation Patrick M. Loerch, Tao Lu, Kelly A. Dakin, James M. Vann, Adrian Isaacs, Chengiz Geula, Jianbin Wang, Ying Pan, Dana H. Gabuzda, Cheng Li, Tomas A. Prolla, and Bruce A. Yankner PMCID: PMC2553198 Distractor Inhibition Predicts Individual Differences in the Attentional Blink Paul E. Dux and René Marois PMCID: PMC2553194 The IL-1-Like Cytokine IL-33 Is Constitutively Expressed in the Nucleus of Endothelial Cells and Epithelial Cells In Vivo: A Novel ‘Alarmin’? Christine Moussion, Nathalie Ortega, and Jean-Philippe Girard PMCID: PMC2556082 A Functional Misexpression Screen Uncovers a Role for Enabled in Progressive Neurodegeneration Carolina Rezával, Jimena Berni, Ezequiel Axel Gorostiza, Santiago Werbajh, María Marta Fagilde, María Paz Fernández, Esteban J. Beckwith, Ezequiel J. Aranovich, Carmen A. Sabio y García, and María Fernanda Ceriani PMCID: PMC2553195 Hybridization among Three Native North American Canis Species in a Region of Natural Sympatry Frank Hailer and Jennifer A. Leonard PMCID: PMC2556088 Immune Complex Glomerulonephritis Following Bone Marrow Transplantation in C3 Deficient Mice Thomas R. Welch and Lisa W. Blystone PMCID: PMC2553262 An Intracellular Antioxidant Determines the Expression of a Melanin-Based Signal in a Bird Ismael Galván and Carlos Alonso-Alvarez PMCID: PMC2556083 Transplantation of Human Umbilical Mesenchymal Stem Cells from Wharton's Jelly after Complete Transection of the Rat Spinal Cord Chang-Ching Yang, Yang-Hsin Shih, Miau-Hwa Ko, Shao-Yun Hsu, Henrich Cheng, and Yu-Show Fu PMCID: PMC2566594 Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy Ki-Hong Jung, Christopher Dardick, Laura E. Bartley, Peijian Cao, Jirapa Phetsom, Patrick Canlas, Young-Su Seo, Michael Shultz, Shu Ouyang, Qiaoping Yuan, Bryan C. Frank, Eugene Ly, Li Zheng, Yi Jia, An-Ping Hsia, Kyungsook An, Hui-Hsien Chou, David Rocke, Geun Cheol Lee, Patrick S. Schnable, Gynheung An, C. Robin Buell, and Pamela C. Ronald PMCID: PMC2556097 Meiotic Regulation of TPX2 Protein Levels Governs Cell Cycle Progression in Mouse Oocytes Stéphane Brunet, Julien Dumont, Karen W. Lee, Kazuhisa Kinoshita, Pascale Hikal, Oliver J. Gruss, Bernard Maro, and Marie-Hélène Verlhac PMCID: PMC2556383 Influenza A H5N1 Clade 2.3.4 Virus with a Different Antiviral Susceptibility Profile Replaced Clade 1 Virus in Humans in Northern Vietnam Mai T. Q. Le, Heiman F. L. Wertheim, Hien D. Nguyen, Walter Taylor, Phuong V. M. Hoang, Cuong D. Vuong, Hang L. K. Nguyen, Ha H. Nguyen, Thai Q. Nguyen, Trung V. Nguyen, Trang D. Van, Bich T. Ngoc, Thinh N. Bui, Binh G. Nguyen, Liem T. Nguyen, San T. Luong, Phuc H. Phan, Hung V. Pham, Tung Nguyen, Annette Fox, Cam V. Nguyen, Ha Q. Do, Martin Crusat, Jeremy Farrar, Hien T. Nguyen, Menno D. de Jong, and Peter Horby PMCID: PMC2556101 Common and Unique Contributions of Decorin-Binding Proteins A and B to the Overall Virulence of Borrelia burgdorferi Yanlin Shi, Qilong Xu, Sunita V. Seemanaplli, Kristy McShan, and Fang Ting Liang PMCID: PMC2556102 Allele-Specific RNA Silencing of Mutant Ataxin-3 Mediates Neuroprotection in a Rat Model of Machado-Joseph Disease Sandro Alves, Isabel Nascimento-Ferreira, Gwennaëlle Auregan, Raymonde Hassig, Noëlle Dufour, Emmanuel Brouillet, Maria C. Pedroso de Lima, Philippe Hantraye, Luís Pereira de Almeida, and Nicole Déglon PMCID: PMC2553199 Quantitative Modeling of Currents from a Voltage Gated Ion Channel Undergoing Fast Inactivation Carlos J. Camacho PMCID: PMC2551740 Adaptive Threonine Increase in Transmembrane Regions of Mitochondrial Proteins in Higher Primates Yasuhiro Kitazoe, Hirohisa Kishino, Masami Hasegawa, Noriaki Nakajima, Jeffrey L. Thorne, and Masashi Tanaka PMCID: PMC2553178 Variation in the Large-Scale Organization of Gene Expression Levels in the Hippocampus Relates to Stable Epigenetic Variability in Behavior Mark D. Alter, Daniel B. Rubin, Keri Ramsey, Rebecca Halpern, Dietrich A. Stephan, L. F. Abbott, and Rene Hen PMCID: PMC2556388 Positive Regulation of DNA Double Strand Break Repair Activity during Differentiation of Long Life Span Cells: The Example of Adipogenesis Aline Meulle, Bernard Salles, Danièle Daviaud, Philippe Valet, and Catherine Muller PMCID: PMC2556389 The Cell Signaling Adaptor Protein EPS-8 Is Essential for C. elegans Epidermal Elongation and Interacts with the Ankyrin Repeat Protein VAB-19 Mei Ding, Ryan S. King, Emily C. Berry, Ying Wang, Jeff Hardin, and Andrew D. Chisholm PMCID: PMC2553197 Serum and Cerebrospinal Fluid Autoantibodies in Patients with Neuropsychiatric Lupus Erythematosus. Implications for Diagnosis and Pathogenesis Hilda Fragoso-Loyo, Javier Cabiedes, Alejandro Orozco-Narváez, Luis Dávila-Maldonado, Yemil Atisha-Fregoso, Betty Diamond, Luis Llorente, and Jorge Sánchez-Guerrero PMCID: PMC2556096 Cellular Mechanisms Underlying the Laxative Effect of Flavonol Naringenin on Rat Constipation Model Zi-Huan Yang, Hai-Jie Yu, Ao Pan, Jian-Yang Du, Ye-Chun Ruan, Wing-Hung Ko, Hsiao-Chang Chan, and Wen-Liang Zhou PMCID: PMC2553183 Hemispheric Specialization in Dogs for Processing Different Acoustic Stimuli Marcello Siniscalchi, Angelo Quaranta, and Lesley J. Rogers PMCID: PMC2553184 Ubiquitous Water-Soluble Molecules in Aquatic Plant Exudates Determine Specific Insect Attraction Julien Sérandour, Stéphane Reynaud, John Willison, Joëlle Patouraux, Thierry Gaude, Patrick Ravanel, Guy Lempérière, and Muriel Raveton PMCID: PMC2556394 Estimated Drug Overdose Deaths Averted by North America's First Medically-Supervised Safer Injection Facility M-J. S. Milloy, Thomas Kerr, Mark Tyndall, Julio Montaner, and Evan Wood PMCID: PMC2556397 Oxygen-Independent Stabilization of Hypoxia Inducible Factor (HIF)-1 during RSV Infection Helene A. Haeberle, Carin Dürrstein, Peter Rosenberger, Yashoda M. Hosakote, Johannes Kuhlicke, Volkhard A. J. Kempf, Roberto P. Garofalo, and Holger K. Eltzschig PMCID: PMC2556398 Rapid Chromosome Evolution in Recently Formed Polyploids in Tragopogon (Asteraceae) K. Yoong Lim, Douglas E. Soltis, Pamela S. Soltis, Jennifer Tate, Roman Matyasek, Hana Srubarova, Ales Kovarik, J. Chris Pires, Zhiyong Xiong, and Andrew R. Leitch PMCID: PMC2556386 A Novel Role for the SMG-1 Kinase in Lifespan and Oxidative Stress Resistance in Caenorhabditis elegans Ingrid Masse, Laurent Molin, Laurent Mouchiroud, Philippe Vanhems, Francesca Palladino, Marc Billaud, and Florence Solari PMCID: PMC2556085 Causal Measures of Structure and Plasticity in Simulated and Living Neural Networks Alex J. Cadotte, Thomas B. DeMarse, Ping He, and Mingzhou Ding PMCID: PMC2556387 Importance of Achromatic Contrast in Short-Range Fruit Foraging of Primates Chihiro Hiramatsu, Amanda D. Melin, Filippo Aureli, Colleen M. Schaffner, Misha Vorobyev, Yoshifumi Matsumoto, and Shoji Kawamura PMCID: PMC2559900 Tree of Life Based on Genome Context Networks Guohui Ding, Zhonghao Yu, Jing Zhao, Zhen Wang, Yun Li, Xiaobin Xing, Chuan Wang, Lei Liu, and Yixue Li PMCID: PMC2566592 Discovery and Expansion of Gene Modules by Seeking Isolated Groups in a Random Graph Process Jochen Brumm, Elizabeth Conibear, Wyeth W. Wasserman, and Jennifer Bryan PMCID: PMC2559867 Components of SurA Required for Outer Membrane Biogenesis in Uropathogenic Escherichia coli Kristin M. Watts and David A. Hunstad PMCID: PMC2556385 CD44s and CD44v6 Expression in Head and Neck Epithelia Brigitte Mack and Olivier Gires PMCID: PMC2566597 Factors Contributing to the Biofilm-Deficient Phenotype of Staphylococcus aureus sarA Mutants Laura H. Tsang, James E. Cassat, Lindsey N. Shaw, Karen E. Beenken, and Mark S. Smeltzer PMCID: PMC2556392 Evolutionary Signatures of Common Human Cis-Regulatory Haplotypes Ching Ouyang, David D. Smith, and Theodore G. Krontiris PMCID: PMC2557141 Effect of Adjunct Metformin Treatment in Patients with Type-1 Diabetes and Persistent Inadequate Glycaemic Control. A Randomized Study Søren Søgaard Lund, Lise Tarnow, Anne Sofie Astrup, Peter Hovind, Peter Karl Jacobsen, Amra Ciric Alibegovic, Ida Parving, Lotte Pietraszek, Merete Frandsen, Peter Rossing, Hans-Henrik Parving, and Allan Arthur Vaag PMCID: PMC2566605 A Non-Canonical Function of Zebrafish Telomerase Reverse Transcriptase Is Required for Developmental Hematopoiesis Shintaro Imamura, Junzo Uchiyama, Eriko Koshimizu, Jun-ichi Hanai, Christina Raftopoulou, Ryan D. Murphey, Peter E. Bayliss, Yoichi Imai, Caroline Erter Burns, Kenkichi Masutomi, Sarantis Gagos, Leonard I. Zon, Thomas M. Roberts, and Shuji Kishi PMCID: PMC2561060 Mutual Mate Choice: When it Pays Both Sexes to Avoid Inbreeding Mathieu Lihoreau, Cédric Zimmer, and Colette Rivault PMCID: PMC2557063 ama1 Genes of Sympatric Plasmodium vivax and P. falciparum from Venezuela Differ Significantly in Genetic Diversity and Recombination Frequency Rosalynn L. Ord, Adriana Tami, and Colin J. Sutherland PMCID: PMC2559863 Dysfunction of Nrf-2 in CF Epithelia Leads to Excess Intracellular H2O2 and Inflammatory Cytokine Production Junnan Chen, Michael Kinter, Samuel Shank, Calvin Cotton, Thomas J. Kelley, and Assem G. Ziady PMCID: PMC2563038 Epithelial to Mesenchymal Transition of a Primary Prostate Cell Line with Switches of Cell Adhesion Modules but without Malignant Transformation Xi-Song Ke, Yi Qu, Naomi Goldfinger, Kari Rostad, Randi Hovland, Lars A. Akslen, Varda Rotter, Anne Margrete Øyan, and Karl-Henning Kalland PMCID: PMC2557125 Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF Jeremy R. Sanford, Pedro Coutinho, Jamie A. Hackett, Xin Wang, William Ranahan, and Javier F. Caceres PMCID: PMC2556390 Virulent Synergistic Effect between Enterococcus faecalis and Escherichia coli Assayed by Using the Caenorhabditis elegans Model Jean-Philippe Lavigne, Marie-Hélène Nicolas-Chanoine, Gisèle Bourg, Jérôme Moreau, and Albert Sotto PMCID: PMC2557124 Fetal and Neonatal Nicotine Exposure in Wistar Rats Causes Progressive Pancreatic Mitochondrial Damage and Beta Cell Dysfunction Jennifer E. Bruin, Maria A. Petre, Sandeep Raha, Katherine M. Morrison, Hertzel C. Gerstein, and Alison C. Holloway PMCID: PMC2566598 Paired Assessment of Volatile Anesthetic Concentrations with Synaptic Actions Recorded In Vitro Stuart J. McDougall, James H. Peters, Lia LaBrant, Xin Wang, Dennis R. Koop, and Michael C. Andresen PMCID: PMC2556393 MetaSim—A Sequencing Simulator for Genomics and Metagenomics Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, and Daniel H. Huson PMCID: PMC2556396 Probing Metagenomics by Rapid Cluster Analysis of Very Large Datasets Weizhong Li, John C. Wooley, and Adam Godzik PMCID: PMC2557142 Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers Nathan A. Baird, Paul D. Etter, Tressa S. Atwood, Mark C. Currey, Anthony L. Shiver, Zachary A. Lewis, Eric U. Selker, William A. Cresko, and Eric A. Johnson PMCID: PMC2557064 Dendritic Cells Release HLA-B-Associated Transcript-3 Positive Exosomes to Regulate Natural Killer Function Venkateswara Rao Simhadri, Katrin S. Reiners, Hinrich P. Hansen, Daniela Topolar, Vijaya Lakshmi Simhadri, Klaus Nohroudi, Thomas A. Kufer, Andreas Engert, and Elke Pogge von Strandmann PMCID: PMC2566590 A New Antigen Retrieval Technique for Human Brain Tissue Raúl Alelú-Paz, Ignacio Iturrieta-Zuazo, William Byne, Vahram Haroutunian, Mercedes García-Villanueva, Alberto Rábano, María García-Amado, Lucía Prensa, and José Manuel Giménez-Amaya PMCID: PMC2566591 Underutilization of Social Insurance among the Poor: Evidence from the Philippines Stella Quimbo, Jhiedon Florentino, John W. Peabody, Riti Shimkhada, Carlo Panelo, and Orville Solon PMCID: PMC2557126 Genome Wide Identification of Recessive Cancer Genes by Combinatorial Mutation Analysis Stefano Volinia, Nicoletta Mascellani, Jlenia Marchesini, Angelo Veronese, Elizabeth Ormondroyd, Hansjuerg Alder, Jeff Palatini, Massimo Negrini, and Carlo M. Croce PMCID: PMC2557123 Interleukin-10 Promotes Pathological Angiogenesis by Regulating Macrophage Response to Hypoxia during Development Dru S. Dace, Aslam A. Khan, Jennifer Kelly, and Rajendra S. Apte PMCID: PMC2557127 Beneficial Effects of HIV Peptidase Inhibitors on Fonsecaea pedrosoi: Promising Compounds to Arrest Key Fungal Biological Processes and Virulence Vanila F. Palmeira, Lucimar F. Kneipp, Sonia Rozental, Celuta S. Alviano, and André L. S. Santos PMCID: PMC2557140 Mutants of GABA Transaminase (POP2) Suppress the Severe Phenotype of succinic semialdehyde dehydrogenase (ssadh) Mutants in Arabidopsis Frank Ludewig, Anke Hüser, Hillel Fromm, Linda Beauclair, and Nicolas Bouché PMCID: PMC2557145 Knockdown of MBP-1 in Human Foreskin Fibroblasts Induces p53-p21 Dependent Senescence Asish K. Ghosh, Tatsuo Kanda, Robert Steele, and Ratna B. Ray PMCID: PMC2557062 Different Transcriptional Control of Metabolism and Extracellular Matrix in Visceral and Subcutaneous Fat of Obese and Rimonabant Treated Mice Carine Poussin, Diana Hall, Kaori Minehira, Anne-Marie Galzin, David Tarussio, and Bernard Thorens PMCID: PMC2586343 A-Type GABA Receptor as a Central Target of TRPM8 Agonist Menthol Xiao-Bing Zhang, Peng Jiang, Neng Gong, Xiao-Ling Hu, Da Fei, Zhi-Qi Xiong, Lin Xu, and Tian-Le Xu PMCID: PMC2560999 Functional Deficits in nNOSμ-Deficient Skeletal Muscle: Myopathy in nNOS Knockout Mice Justin M. Percival, Kendra N. E. Anderson, Paul Gregorevic, Jeffrey S. Chamberlain, and Stanley C. Froehner PMCID: PMC2559862 Cortical Activations in Humans Grasp-Related Areas Depend on Hand Used and Handedness Chiara Begliomini, Cristian Nelini, Andrea Caria, Wolfgang Grodd, and Umberto Castiello PMCID: PMC2561002 A Functional Role for 4qA/B in the Structural Rearrangement of the 4q35 Region and in the Regulation of FRG1 and ANT1 in Facioscapulohumeral Dystrophy Iryna Pirozhkova, Andrei Petrov, Petr Dmitriev, Dalila Laoudj, Marc Lipinski, and Yegor Vassetzky PMCID: PMC2561064 Requirement of RIZ1 for Cancer Prevention by Methyl-Balanced Diet Wenyun Zhou, Sergio Alonso, Daisaku Takai, Shelly C. Lu, Fumiichiro Yamamoto, Manuel Perucho, and Shi Huang PMCID: PMC2559864 Impaired Autophagy of an Intracellular Pathogen Induced by a Crohn's Disease Associated ATG16L1 Variant Petric Kuballa, Alan Huett, John D. Rioux, Mark J. Daly, and Ramnik J. Xavier PMCID: PMC2566595 Comparison of Population-Based Association Study Methods Correcting for Population Stratification Feng Zhang, Yuping Wang, and Hong-Wen Deng PMCID: PMC2562035 Distribution and Effects of Nonsense Polymorphisms in Human Genes Yumi Yamaguchi-Kabata, Makoto K. Shimada, Yosuke Hayakawa, Shinsei Minoshima, Ranajit Chakraborty, Takashi Gojobori, and Tadashi Imanishi PMCID: PMC2561068 Inhibition of α-Synuclein Fibrillization by Dopamine Is Mediated by Interactions with Five C-Terminal Residues and with E83 in the NAC Region Fernando E. Herrera, Alessandra Chesi, Katerina E. Paleologou, Adrian Schmid, Adriana Munoz, Michele Vendruscolo, Stefano Gustincich, Hilal A. Lashuel, and Paolo Carloni PMCID: PMC2566601 Accuracy of Predicting the Genetic Risk of Disease Using a Genome-Wide Approach Hans D. Daetwyler, Beatriz Villanueva, and John A. Woolliams PMCID: PMC2561058 Colocalized Structural and Functional Changes in the Cortex of Patients with Trigeminal Neuropathic Pain Alexandre F. DaSilva, Lino Becerra, Gautam Pendse, Boris Chizh, Shannon Tully, and David Borsook PMCID: PMC2561059 Sensory Response System of Social Behavior Tied to Female Reproductive Traits Jennifer M. Tsuruda, Gro V. Amdam, and Robert E. Page, Jr PMCID: PMC2560998 ROCK1 and LIMK2 Interact in Spread but Not Blebbing Cancer Cells Kerry F. Shea, Claire M. Wells, Andrew P. Garner, and Gareth E. Jones PMCID: PMC2561063 Differential Effects of Aging on Fore– and Hindpaw Maps of Rat Somatosensory Cortex Marianne David-Jürgens, Lydia Churs, Thomas Berkefeld, Roberto F. Zepka, and Hubert R. Dinse PMCID: PMC2561003 ANGLOR: A Composite Machine-Learning Algorithm for Protein Backbone Torsion Angle Prediction Sitao Wu and Yang Zhang PMCID: PMC2559866 Genetic Traces of Recent Long-Distance Dispersal in a Predominantly Self-Recruiting Coral Madeleine J. H. van Oppen, Adrian Lutz, Glenn De'ath, Lesa Peplow, and Stuart Kininmonth PMCID: PMC2564835 The Genetic Liability to Disability Retirement: A 30-Year Follow-Up Study of 24,000 Finnish Twins Karoliina Harkonmäki, Karri Silventoinen, Esko Levälahti, Janne Pitkäniemi, Antti Huunan-Seppälä, Timo Klaukka, Markku Koskenvuo, and Jaakko Kaprio PMCID: PMC2566596 A Nationwide Survey of the Quality of Antimalarials in Retail Outlets in Tanzania Harparkash Kaur, Catherine Goodman, Eloise Thompson, Katy-Anne Thompson, Irene Masanja, S. Patrick Kachur, and Salim Abdulla PMCID: PMC2565501 Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb Repressive Complex 2 Components Danhua Jiang, Yuqi Wang, Yizhong Wang, and Yuehui He PMCID: PMC2561057 M-CSF Signals through the MAPK/ERK Pathway via Sp1 to Induce VEGF Production and Induces Angiogenesis In Vivo Jennifer M. Curry, Tim D. Eubank, Ryan D. Roberts, Yijie Wang, Nabendu Pore, Amit Maity, and Clay B. Marsh PMCID: PMC2566603 Evolutionarily Conserved Transcriptional Co-Expression Guiding Embryonic Stem Cell Differentiation Yu Sun, Huai Li, Ying Liu, Mark P. Mattson, Mahendra S. Rao, and Ming Zhan PMCID: PMC2566604 Whole Blood Interferon-Gamma Responses to Mycobacterium tuberculosis Antigens in Young Household Contacts of Persons with Tuberculosis in Uganda Deborah A. Lewinsohn, Sarah Zalwango, Catherine M. Stein, Harriet Mayanja-Kizza, Alphonse Okwera, W. Henry Boom, Roy D. Mugerwa, and Christopher C. Whalen PMCID: PMC2560997 Long-Range Enhancer Associated with Chromatin Looping Allows AP-1 Regulation of the Peptidylarginine Deiminase 3 Gene in Differentiated Keratinocyte Stéphane Chavanas, Véronique Adoue, Marie-Claire Méchin, Shibo Ying, Sijun Dong, Hélène Duplan, Marie Charveron, Hidenari Takahara, Guy Serre, and Michel Simon PMCID: PMC2566589 Tumor-Infiltrating T Cells Correlate with NY-ESO-1-Specific Autoantibodies in Ovarian Cancer Katy Milne, Rebecca O. Barnes, Adam Girardin, Melanie A. Mawer, Nancy J. Nesslinger, Alvin Ng, Julie S. Nielsen, Robert Sahota, Eric Tran, John R. Webb, May Q. Wong, Darin A. Wick, Andrew Wray, Elissa McMurtrie, Martin Köbel, Steven E. Kalloger, C. Blake Gilks, Peter H. Watson, and Brad H. Nelson PMCID: PMC2561074 Oseltamivir Is Adequately Absorbed Following Nasogastric Administration to Adult Patients with Severe H5N1 Influenza Walter R. J. Taylor, Bui Nghia Thinh, Giang Thuc Anh, Peter Horby, Heiman Wertheim, Niklas Lindegardh, Menno D. de Jong, Kasia Stepniewska, Tran Thuy Hanh, Nguyen Duc Hien, Ngo Minh Bien, Ngo Quy Chau, Annette Fox, Nghiem My Ngoc, Martin Crusat, Jeremy J. Farrar, Nicholas J. White, Nguyen Hong Ha, Trinh Thi Lien, Nguyen Vu Trung, Nicholas Day, and Nguyen Gia Binh PMCID: PMC2565445 Optimal-Foraging Predator Favors Commensalistic Batesian Mimicry Atsushi Honma, Koh-ichi Takakura, and Takayoshi Nishida PMCID: PMC2565832 Rare Codons Cluster Thomas F. Clarke, IV and Patricia L. Clark PMCID: PMC2565806 Composition and Function of Haemolymphatic Tissues in the European Common Shrew Daniel P. Bray, Malcolm Bennett, Paula Stockley, Jane L. Hurst, and Anja Kipar PMCID: PMC2561066 Discovery of a Distinct Superfamily of Kunitz-Type Toxin (KTT) from Tarantulas Chun-Hua Yuan, Quan-Yuan He, Kuan Peng, Jian-Bo Diao, Li-Ping Jiang, Xing Tang, and Song-Ping Liang PMCID: PMC2561067 Gene Expression Profiling of Two Distinct Neuronal Populations in the Rodent Spinal Cord Jesper Ryge, Ann-Charlotte Westerdahl, Preben Alstrøm, and Ole Kiehn PMCID: PMC2566599 Glucose Uptake and Its Effect on Gene Expression in Prochlorococcus Guadalupe Gómez-Baena, Antonio López-Lozano, Jorge Gil-Martínez, José Manuel Lucena, Jesús Diez, Pedro Candau, and Jose Manuel García-Fernández PMCID: PMC2565063 Accuracy of Immunodiagnostic Tests for Active Tuberculosis Using Single and Combined Results: A Multicenter TBNET-Study Delia Goletti, Carrara Stefania, Ornella Butera, Massimo Amicosante, Martin Ernst, Ilaria Sauzullo, Vincenzo Vullo, Daniela Cirillo, Emanuele Borroni, Roumiana Markova, Roumiana Drenska, José Dominguez, Irene Latorre, Claudio Angeletti, Assunta Navarra, Nicola Petrosillo, Francesco Nicola Lauria, Giuseppe Ippolito, Giovanni Battista Migliori, Christoph Lange, and Enrico Girardi PMCID: PMC2561073 Y-SNPs Do Not Indicate Hybridisation between European Aurochs and Domestic Cattle Ruth Bollongino, Julia Elsner, Jean-Denis Vigne, and Joachim Burger PMCID: PMC2561061 Human Keratinocytes Are Vanilloid Resistant László Pecze, Kornélia Szabó, Márta Széll, Katalin Jósvay, Krisztián Kaszás, Erzsébet Kúsz, Tamás Letoha, János Prorok, István Koncz, András Tóth, Lajos Kemény, Csaba Vizler, and Zoltán Oláh PMCID: PMC2566593 An Analysis of Human MicroRNA and Disease Associations Ming Lu, Qipeng Zhang, Min Deng, Jing Miao, Yanhong Guo, Wei Gao, and Qinghua Cui PMCID: PMC2559869 Analysis of Nigerians with Apparently Sporadic Parkinson Disease for Mutations in LRRK2, PRKN and ATXN3 Njideka Okubadejo, Angela Britton, Cynthia Crews, Rufus Akinyemi, John Hardy, Andrew Singleton, and Jose Bras PMCID: PMC2559870 G-CSFR Ubiquitination Critically Regulates Myeloid Cell Survival and Proliferation Jing Ai, Lawrence J. Druhan, Megan J. Loveland, and Belinda R. Avalos PMCID: PMC2561048 Anti-HIV-1 Response Elicited in Rabbits by Anti-Idiotype Monoclonal Antibodies Mimicking the CD4-Binding Site Roberto Burioni, Nicasio Mancini, Donata De Marco, Nicola Clementi, Mario Perotti, Giovanni Nitti, Monica Sassi, Filippo Canducci, Krisha Shvela, Patrizia Bagnarelli, John R. Mascola, and Massimo Clementi PMCID: PMC2565497 Fluorescence Resonance Energy Transfer Imaging Reveals that Chemokine-Binding Modulates Heterodimers of CXCR4 and CCR5 Receptors Nilgun Isik, Dale Hereld, and Tian Jin PMCID: PMC2566588 Ashkenazi Jewish Centenarians Do Not Demonstrate Enrichment in Mitochondrial Haplogroup J Liran I. Shlush, Gil Atzmon, Roni Weisshof, Doron Behar, Guenady Yudkovsky, Nir Barzilai, and Karl Skorecki PMCID: PMC2559868 Detection and Molecular Characterization of 9000-Year-Old Mycobacterium tuberculosis from a Neolithic Settlement in the Eastern Mediterranean Israel Hershkovitz, Helen D. Donoghue, David E. Minnikin, Gurdyal S. Besra, Oona Y-C. Lee, Angela M. Gernaey, Ehud Galili, Vered Eshed, Charles L. Greenblatt, Eshetu Lemma, Gila Kahila Bar-Gal, and Mark Spigelman PMCID: PMC2565837 Re-Assembly of the Genome of Francisella tularensis Subsp. holarctica OSU18 Daniela Puiu and Steven L. Salzberg PMCID: PMC2561293 Rapid Reversal of Human Intestinal Ischemia-Reperfusion Induced Damage by Shedding of Injured Enterocytes and Reepithelialisation Joep P. M. Derikx, Robert A. Matthijsen, Adriaan P. de Bruïne, Annemarie A. van Bijnen, Erik Heineman, Ronald M. van Dam, Cornelis H. C. Dejong, and Wim A. Buurman PMCID: PMC2561292 HLA-Driven Convergence of HIV-1 Viral Subtypes B and F Toward the Adaptation to Immune Responses in Human Populations Dario Alberto Dilernia, Leandro Jones, Sabrina Rodriguez, Gabriela Turk, Andrea E. Rubio, Sandra Pampuro, Manuel Gomez-Carrillo, Christian Bautista, Gabriel Deluchi, Jorge Benetucci, María Beatriz Lasala, Leonardo Lourtau, Marcelo Horacio Losso, Héctor Perez, Pedro Cahn, and Horacio Salomón PMCID: PMC2565011 Signaling Flux Redistribution at Toll-Like Receptor Pathway Junctions Kumar Selvarajoo, Yasunari Takada, Jin Gohda, Mohamed Helmy, Shizuo Akira, Masaru Tomita, Masa Tsuchiya, Jun-ichiro Inoue, and Koichi Matsuo PMCID: PMC2561291 Sugary Soda Consumption and Albuminuria: Results from the National Health and Nutrition Examination Survey, 1999–2004 David A. Shoham, Ramon Durazo-Arvizu, Holly Kramer, Amy Luke, Suma Vupputuri, Abhijit Kshirsagar, and Richard S. Cooper PMCID: PMC2562987 Long Lasting Persistence of Bacillus thuringiensis Subsp. israelensis (Bti) in Mosquito Natural Habitats Mathieu Tilquin, Margot Paris, Stéphane Reynaud, Laurence Despres, Patrick Ravanel, Roberto A. Geremia, and Jérôme Gury PMCID: PMC2563433 Estimating the Extent of Vaccine-Derived Poliovirus Infection Alison Wringe, Paul E. M. Fine, Roland W. Sutter, and Olen M. Kew PMCID: PMC2570794 Foot-and-Mouth Disease Virus Persists in the Light Zone of Germinal Centres Nicholas Juleff, Miriam Windsor, Elizabeth Reid, Julian Seago, Zhidong Zhang, Paul Monaghan, Ivan W. Morrison, and Bryan Charleston PMCID: PMC2563691 Carotid Artery Intima-Media Thickness, Carotid Plaque and Coronary Heart Disease and Stroke in Chinese Kuo-Liong Chien, Ta-Chen Su, Jiann-Shing Jeng, Hsiu-Ching Hsu, Wei-Tien Chang, Ming-Fong Chen, Yuan-Teh Lee, and Frank B. Hu PMCID: PMC2562458 Sources and Sinks of Diversification and Conservation Priorities for the Mexican Tropical Dry Forest Judith X. Becerra and D. Lawrence Venable PMCID: PMC2562985 The Effect of Diet Quality and Wing Morph on Male and Female Reproductive Investment in a Nuptial Feeding Ground Cricket Matthew D. Hall, Luc F. Bussière, and Robert Brooks PMCID: PMC2562459 Foraging Decisions in Risk-Uniform Landscapes Jana Anja Eccard and Thilo Liesenjohann PMCID: PMC2562984 Diaphanous-Related Formin 2 and Profilin I Are Required for Gastrulation Cell Movements Shih-Lei Lai, Tun-Hao Chan, Meng-Ju Lin, Wei-Pang Huang, Show-Wan Lou, and Shyh-Jye Lee PMCID: PMC2565064 Birdsong “Transcriptomics”: Neurochemical Specializations of the Oscine Song System Peter V. Lovell, David F. Clayton, Kirstin L. Replogle, and Claudio V. Mello PMCID: PMC2563692 ΔNp63 Is Essential for Epidermal Commitment of Embryonic Stem Cells Alain Medawar, Thierry Virolle, Philippe Rostagno, Stéphanie de la Forest-Divonne, Karen Gambaro, Matthieu Rouleau, and Daniel Aberdam PMCID: PMC2562986 Hepatic Transcriptome Analysis of Hepatitis C Virus Infection in Chimpanzees Defines Unique Gene Expression Patterns Associated with Viral Clearance Santosh Nanda, Michael B. Havert, Gloria M. Calderón, Michael Thomson, Christian Jacobson, Daniel Kastner, and T. Jake Liang PMCID: PMC2562457 Influence of Long Time Storage in Mineral Water on RNA Stability of Pseudomonas aeruginosa and Escherichia coli after Heat Inactivation Claire Cenciarini, Sophie Courtois, Didier Raoult, and Bernard La Scola PMCID: PMC2566809 Evolution of Highly Polymorphic T Cell Populations in Siblings with the Wiskott-Aldrich Syndrome Maxim I. Lutskiy, Jun Y. Park, Susanna K. Remold, and Eileen Remold-O'Donnell PMCID: PMC2567846 Effects of Phosphodiesterase 4 Inhibition on Alveolarization and Hyperoxia Toxicity in Newborn Rats Céline Méhats, Marie-Laure Franco-Montoya, Olivier Boucherat, Emmanuel Lopez, Thomas Schmitz, Elodie Zana, Danièle Evain-Brion, Jacques Bourbon, Christophe Delacourt, and Pierre-Henri Jarreau PMCID: PMC2563688 Functional Dorsoventral Symmetry in Relation to Lift-Based Swimming in the Ocean Sunfish Mola mola Yuuki Watanabe and Katsufumi Sato PMCID: PMC2562982 PP2A-Mediated Dephosphorylation of p107 Plays a Critical Role in Chondrocyte Cell Cycle Arrest by FGF Victoria Kolupaeva, Emmanuel Laplantine, and Claudio Basilico PMCID: PMC2562983 Brevenal Inhibits Pacific Ciguatoxin-1B-Induced Neurosecretion from Bovine Chromaffin Cells César Mattei, Peter J. Wen, Truong D. Nguyen-Huu, Martha Alvarez, Evelyne Benoit, Andrea J. Bourdelais, Richard J. Lewis, Daniel G. Baden, Jordi Molgó, and Frédéric A. Meunier PMCID: PMC2565126 Biological Function and Molecular Mapping of M Antigen in Yeast Phase of Histoplasma capsulatum Allan Jefferson Guimarães, Andrew John Hamilton, Herbert Leonel de M. Guedes, Joshua Daniel Nosanchuk, and Rosely Maria Zancopé-Oliveira PMCID: PMC2566600 Impact of Orthologous Gene Replacement on the Circuitry Governing Pilus Gene Transcription in Streptococci Sergio Lizano, Feng Luo, Farah K. Tengra, and Debra E. Bessen PMCID: PMC2565503 Contrasting Expression of Keratins in Mouse and Human Embryonic Stem Cells Jochen Maurer, Brandon Nelson, Grace Ceceña, Ruchi Bajpai, Mark Mercola, Alexey Terskikh, and Robert G. Oshima PMCID: PMC2565505 A Ligand Peptide Motif Selected from a Cancer Patient Is a Receptor-Interacting Site within Human Interleukin-11 Marina Cardó-Vila, Amado J. Zurita, Ricardo J. Giordano, Jessica Sun, Roberto Rangel, Liliana Guzman-Rojas, Cristiane D. Anobom, Ana P. Valente, Fábio C. L. Almeida, Johanna Lahdenranta, Mikhail G. Kolonin, Wadih Arap, and Renata Pasqualini PMCID: PMC2565473 Cattle Mammary Bioreactor Generated by a Novel Procedure of Transgenic Cloning for Large-Scale Production of Functional Human Lactoferrin Penghua Yang, Jianwu Wang, Guochun Gong, Xiuzhu Sun, Ran Zhang, Zhuo Du, Ying Liu, Rong Li, Fangrong Ding, Bo Tang, Yunping Dai, and Ning Li PMCID: PMC2565487 HIV-Specific T-Cells Accumulate in the Liver in HCV/HIV Co-Infection Bahareh Vali, Feng Yun Yue, R. Brad Jones, Prameet M. Sheth, Rupert Kaul, Michael R. Betts, David Wong, Colin Kovacs, Mona Loutfy, Andrew Common, Roberta Halpenny, and Mario A. Ostrowski PMCID: PMC2565067 Incompetence of Neutrophils to Invasive Group A streptococcus Is Attributed to Induction of Plural Virulence Factors by Dysfunction of a Regulator Manabu Ato, Tadayoshi Ikebe, Hiroki Kawabata, Toshitada Takemori, and Haruo Watanabe PMCID: PMC2565068 Origination of the Split Structure of Spliceosomal Genes from Random Genetic Sequences Rahul Regulapati, Ashwini Bhasi, Chandan Kumar Singh, and Periannan Senapathy PMCID: PMC2565106 A High-Throughput Assay for siRNA-Based Circadian Screens in Human U2OS Cells Christopher Vollmers, Satchidananda Panda, and Luciano DiTacchio PMCID: PMC2565498 Effect of Ku80 Deficiency on Mutation Frequencies and Spectra at a LacZ Reporter Locus in Mouse Tissues and Cells Rita A. Busuttil, Denise P. Muñoz, Ana Maria Garcia, Francis Rodier, Woo Ho Kim, Yousin Suh, Paul Hasty, Judith Campisi, and Jan Vijg PMCID: PMC2565499 Outcome of Occupational Latex Allergy—Work Ability and Quality of Life Albert Nienhaus, Kathrin Kromark, Monika Raulf-Heimsoth, Vera van Kampen, and Rolf Merget PMCID: PMC2565128 A Distinct Translation Initiation Mechanism Generates Cryptic Peptides for Immune Surveillance Shelley R. Starck, Yongkai Ow, Vivian Jiang, Maria Tokuyama, Mark Rivera, Xin Qi, Richard W. Roberts, and Nilabh Shastri PMCID: PMC2565129 Reduced Spontaneous Eye Blink Rates in Recreational Cocaine Users: Evidence for Dopaminergic Hypoactivity Lorenza S. Colzato, Wery P. M. van den Wildenberg, and Bernhard Hommel PMCID: PMC2565797 Evolution of Highly Pathogenic H5N1 Avian Influenza Viruses in Vietnam between 2001 and 2007 Xiu-Feng Wan, Tung Nguyen, C. Todd Davis, Catherine B. Smith, Zi-Ming Zhao, Margaret Carrel, Kenjiro Inui, Hoa T. Do, Duong T. Mai, Samadhan Jadhao, Amanda Balish, Bo Shu, Feng Luo, Michael Emch, Yumiko Matsuoka, Stephen E. Lindstrom, Nancy J. Cox, Cam V. Nguyen, Alexander Klimov, and Ruben O. Donis PMCID: PMC2565130 Mutation Rates of TGFBR2 and ACVR2 Coding Microsatellites in Human Cells with Defective DNA Mismatch Repair Heekyung Chung, Dennis J. Young, Claudia G. Lopez, Thuy-Anh T. Le, Jeffrey K. Lee, Deena Ream-Robinson, Sherry C. Huang, and John M. Carethers PMCID: PMC2565065 A Novel Function of RING Finger Protein 10 in Transcriptional Regulation of the Myelin-Associated Glycoprotein Gene and Myelin Formation in Schwann Cells Shinya Hoshikawa, Toru Ogata, Sayaka Fujiwara, Kozo Nakamura, and Sakae Tanaka PMCID: PMC2565066 Fas-Mediated Apoptosis Regulates the Composition of Peripheral αβ T Cell Repertoire by Constitutively Purging Out Double Negative T Cells Abdiaziz S. Mohamood, Dylan Bargatze, Zuoxiang Xiao, Chunfa Jie, Hideo Yagita, Dawn Ruben, Julie Watson, Shukti Chakravarti, Jonathan P. Schneck, and Abdel Rahim A. Hamad PMCID: PMC2565807 Gender Dimorphism in Skeletal Muscle Leptin Receptors, Serum Leptin and Insulin Sensitivity Borja Guerra, Teresa Fuentes, Safira Delgado-Guerra, Amelia Guadalupe-Grau, Hugo Olmedillas, Alfredo Santana, Jesus Gustavo Ponce-Gonzalez, Cecilia Dorado, and José A. L. Calbet PMCID: PMC2565105 Coronin-1A Links Cytoskeleton Dynamics to TCRαβ-Induced Cell Signaling Bénédicte Mugnier, Béatrice Nal, Christophe Verthuy, Claude Boyer, David Lam, Lionel Chasson, Vincent Nieoullon, Geneviève Chazal, Xiao-Jun Guo, Hai-Tao He, Dominique Rueff-Juy, Andrés Alcover, and Pierre Ferrier PMCID: PMC2568942 Development of a Single Vector System that Enhances Trans-Splicing of SMN2 Transcripts Tristan H. Coady, Travis D. Baughan, Monir Shababi, Marco A. Passini, and Christian L. Lorson PMCID: PMC2565107 Detection and Characterization of CD133+ Cancer Stem Cells in Human Solid Tumours Virginia Tirino, Vincenzo Desiderio, Riccardo d'Aquino, Francesco De Francesco, Giuseppe Pirozzi, Umberto Galderisi, Carlo Cavaliere, Alfredo De Rosa, and Gianpaolo Papaccio PMCID: PMC2565108 Comparison of Classifier Fusion Methods for Predicting Response to Anti HIV-1 Therapy André Altmann, Michal Rosen-Zvi, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Eugen Schülter, Joachim Büch, Daniel Struck, Yardena Peres, Francesca Incardona, Anders Sönnerborg, Rolf Kaiser, Maurizio Zazzi, and Thomas Lengauer PMCID: PMC2565127 Expansion of HIV Laboratory Diagnostic Services in Chennai, India 2001–2006: Is the Growth Commensurate with the Need? A. K. Srikrishnan, Kartik K. Venkatesh, Suniti Solomon, Easter Thamburaj, S. Anand, K. G. Kosalaraman, Pachamuthu Balakrishnan, and Kenneth H. Mayer PMCID: PMC2565796 Worm Grunting, Fiddling, and Charming—Humans Unknowingly Mimic a Predator to Harvest Bait Kenneth C. Catania PMCID: PMC2566961 General Validity of Levelt's Propositions Reveals Common Computational Mechanisms for Visual Rivalry P. Christiaan Klink, Raymond van Ee, and Richard J. A. van Wezel PMCID: PMC2565840 Transcriptional and Functional Profiling of Human Embryonic Stem Cell-Derived Cardiomyocytes Feng Cao, Roger A. Wagner, Kitchener D. Wilson, Xiaoyan Xie, Ji-Dong Fu, Micha Drukker, Andrew Lee, Ronald A. Li, Sanjiv S. Gambhir, Irving L. Weissman, Robert C. Robbins, and Joseph C. Wu PMCID: PMC2565131 Computing Power and Sample Size for Case-Control Association Studies with Copy Number Polymorphism: Application of Mixture-Based Likelihood Ratio Test Wonkuk Kim, Derek Gordon, Jonathan Sebat, Kenny Q. Ye, and Stephen J. Finch PMCID: PMC2566806 Stat1 Phosphorylation Determines Ras Oncogenicity by Regulating p27Kip1 Shuo Wang, Jennifer F. Raven, Joan E. Durbin, and Antonis E. Koromilas PMCID: PMC2568943 Interdependent Utilities: How Social Ranking Affects Choice Behavior Nadège Bault, Giorgio Coricelli, and Aldo Rustichini PMCID: PMC2568945 A Computational Model for Understanding Stem Cell, Trophectoderm and Endoderm Lineage Determination Vijay Chickarmane and Carsten Peterson PMCID: PMC2566811 Finding Quasi-Optimal Network Topologies for Information Transmission in Active Networks Murilo S. Baptista, Josué X. de Carvalho, and Mahir S. Hussein PMCID: PMC2565798 Does the Committee Peer Review Select the Best Applicants for Funding? An Investigation of the Selection Process for Two European Molecular Biology Organization Programmes Lutz Bornmann, Gerlind Wallon, and Anna Ledin PMCID: PMC2567027 ‘Self-Protection’ of Individual CD4+ T Cells against R5 HIV-1 Infection by the Synthesis of Anti-Viral CCR5 Ligands Yongjun Guan, Sayed Abdelwahab, Roberta Kamin-Lewis, Anthony L. DeVico, and George K. Lewis PMCID: PMC2567041 Human Cytomegalovirus Impairs the Function of Plasmacytoid Dendritic Cells in Lymphoid Organs Kerstin Schneider, Ursula Meyer-Koenig, and Frank T. Hufert PMCID: PMC2565836 Diabetes Mellitus and Mortality after Acute Coronary Syndrome as a First or Recurrent Cardiovascular Event Richard M. Cubbon, Afroze Abbas, Stephen B. Wheatcroft, Niamh Kilcullen, Raj Das, Christine Morrell, Julian H. Barth, Mark T. Kearney, Alistair S. Hall, and for the EMMACE-2 investigators PMCID: PMC2567028 Sexual Cannibalism: High Incidence in a Natural Population with Benefits to Females Rubén Rabaneda-Bueno, Miguel Á. Rodríguez-Gironés, Sara Aguado-de-la-Paz, Carmen Fernández-Montraveta, Eva De Mas, David H. Wise, and Jordi Moya-Laraño PMCID: PMC2565799 Natural Variation in Immune Responses to Neonatal Mycobacterium bovis Bacillus Calmette-Guerin (BCG) Vaccination in a Cohort of Gambian Infants Chris Finan, Martin O. C. Ota, Arnaud Marchant, and Melanie J. Newport PMCID: PMC2567029 The Evolutionary Selective Advantage of HIV-1 Escape Variants and the Contribution of Escape to the HLA-Associated Risk of AIDS Progression Becca Asquith PMCID: PMC2567026 Retinoic Acid Restores Adult Hippocampal Neurogenesis and Reverses Spatial Memory Deficit in Vitamin A Deprived Rats Emilie Bonnet, Katia Touyarot, Serge Alfos, Véronique Pallet, Paul Higueret, and Djoher Nora Abrous PMCID: PMC2567033 The Diaphragm and Lubricant Gel for Prevention of Cervical Sexually Transmitted Infections: Results of a Randomized Controlled Trial Gita Ramjee, Ariane van der Straten, Tsungai Chipato, Guy de Bruyn, Kelly Blanchard, Stephen Shiboski, Helen Cheng, Elizabeth Montgomery, Nancy Padian, and for the MIRA team PMCID: PMC2567030 Animal Ecosystem Engineers Modulate the Diversity-Invasibility Relationship Nico Eisenhauer, Alexandru Milcu, Alexander C. W. Sabais, and Stefan Scheu PMCID: PMC2565839 Identification of a Novel Risk Locus for Multiple Sclerosis at 13q31.3 by a Pooled Genome-Wide Scan of 500,000 Single Nucleotide Polymorphisms Manuel Comabella, David W. Craig, Montse Camiña-Tato, Carlos Morcillo, Cristina Lopez, Arcadi Navarro, Jordi Rio, BiomarkerMS Study Group, Xavier Montalban, and Roland Martin PMCID: PMC2566815 African HIV/AIDS Trials Are More Likely to Report Adequate Allocation Concealment and Random Generation than North American Trials Nandi Siegfried, Michael Clarke, Jimmy Volmink, and Lize Van der Merwe PMCID: PMC2566805 Spatial Modulation of Primate Inferotemporal Responses by Eye Position Sidney R. Lehky, Xinmiao Peng, Carrie J. McAdams, and Anne B. Sereno PMCID: PMC2567040 Extended Driving Impairs Nocturnal Driving Performances Patricia Sagaspe, Jacques Taillard, Torbjorn Åkerstedt, Virginie Bayon, Stéphane Espié, Guillaume Chaumet, Bernard Bioulac, and Pierre Philip PMCID: PMC2566807 MyD88 Dependent Signaling Contributes to Protective Host Defense against Burkholderia pseudomallei W. Joost Wiersinga, Catharina W. Wieland, Joris J. T. H. Roelofs, and Tom van der Poll PMCID: PMC2566818 The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing Katherine Sorber, Charles Chiu, Dale Webster, Michelle Dimon, J. Graham Ruby, Armin Hekele, and Joseph L. DeRisi PMCID: PMC2566813 PhoP: A Missing Piece in the Intricate Puzzle of Mycobacterium tuberculosis Virulence Jesús Gonzalo-Asensio, Serge Mostowy, Jose Harders-Westerveen, Kris Huygen, Rogelio Hernández-Pando, Jelle Thole, Marcel Behr, Brigitte Gicquel, and Carlos Martín PMCID: PMC2566814 Adherent Monomer-Misfolded SOD1 Yasuhiro Watanabe, Eri Morita, Yasuyo Fukada, Koji Doi, Kenichi Yasui, Michio Kitayama, Toshiya Nakano, and Kenji Nakashima PMCID: PMC2567031 Kinetics of Wnt-Driven β-Catenin Stabilization Revealed by Quantitative and Temporal Imaging Rami N. Hannoush PMCID: PMC2570213 Evidence for Differential Assortative Female Preference in Association with Refugial Isolation of Rainbow Skinks in Australia's Tropical Rainforests Gaynor Dolman PMCID: PMC2567034 Complete Genome Viral Phylogenies Suggests the Concerted Evolution of Regulatory Cores and Accessory Satellites Paolo Marinho de Andrade Zanotto and David C. Krakauer PMCID: PMC2567038 Rapid Testing May Not Improve Uptake of HIV Testing and Same Day Results in a Rural South African Community: A Cohort Study of 12,000 Women Ntombizodumo B. Mkwanazi, Deven Patel, Marie-Louise Newell, Nigel C. Rollins, A. Coutsoudis, H. M. Coovadia, and R. M. Bland PMCID: PMC2567429 The Multisensory Attentional Consequences of Tool Use: A Functional Magnetic Resonance Imaging Study Nicholas P. Holmes, Charles Spence, Peter C. Hansen, Clare E. Mackay, and Gemma A. Calvert PMCID: PMC2567039 Early Category-Specific Cortical Activation Revealed by Visual Stimulus Inversion Hanneke K. M. Meeren, Nouchine Hadjikhani, Seppo P. Ahlfors, Matti S. Hämäläinen, and Beatrice de Gelder PMCID: PMC2566817 Dynein-Dynactin Complex Is Essential for Dendritic Restriction of TM1-Containing Drosophila Dscam Jacob Shun-Jen Yang, Jia-Min Bai, and Tzumin Lee PMCID: PMC2566808 On the Functional Significance of the P1 and N1 Effects to Illusory Figures in the Notch Mode of Presentation Mathieu Brodeur, Benoît A. Bacon, Louis Renoult, Marie Prévost, Martin Lepage, and J. Bruno Debruille PMCID: PMC2567430 Active Transport of the Ubiquitin Ligase MID1 along the Microtubules Is Regulated by Protein Phosphatase 2A Beatriz Aranda-Orgillés, Johanna Aigner, Melanie Kunath, Rudi Lurz, Rainer Schneider, and Susann Schweiger PMCID: PMC2568803 Curcumin Inhibits Glyoxalase 1—A Possible Link to Its Anti-Inflammatory and Anti-Tumor Activity Thore Santel, Gabi Pflug, Nasr Y. A. Hemdan, Angelika Schäfer, Marcus Hollenbach, Martin Buchold, Anja Hintersdorf, Inge Lindner, Andreas Otto, Marina Bigl, Ilka Oerlecke, Antje Hutschenreuter, Ulrich Sack, Klaus Huse, Marco Groth, Claudia Birkemeyer, Wolfgang Schellenberger, Rolf Gebhardt, Mathias Platzer, Thomas Weiss, Mookambeswaran A. Vijayalakshmi, Monika Krüger, and Gerd Birkenmeier PMCID: PMC2567432 Induction of IgG3 to LPS via Toll-Like Receptor 4 Co-Stimulation Francisco J. Quintana, Aderet Solomon, Irun R. Cohen, and Gabriel Nussbaum PMCID: PMC2566810 Prediction of Extracellular Proteases of the Human Pathogen Helicobacter pylori Reveals Proteolytic Activity of the Hp1018/19 Protein HtrA Martin Löwer, Christiane Weydig, Dirk Metzler, Andreas Reuter, Anna Starzinski-Powitz, Silja Wessler, and Gisbert Schneider PMCID: PMC2567035 Remote Excitation of Neuronal Circuits Using Low-Intensity, Low-Frequency Ultrasound William J. Tyler, Yusuf Tufail, Michael Finsterwald, Monica L. Tauchmann, Emily J. Olson, and Cassondra Majestic PMCID: PMC2568804 Sleep Loss Produces False Memories Susanne Diekelmann, Hans-Peter Landolt, Olaf Lahl, Jan Born, and Ullrich Wagner PMCID: PMC2567433 Olfactory Interference during Inhibitory Backward Pairing in Honey Bees Matthieu Dacher and Brian H. Smith PMCID: PMC2568944 Hybrids of the bHLH and bZIP Protein Motifs Display Different DNA-Binding Activities In Vivo vs. In Vitro Hiu-Kwan Chow, Jing Xu, S. Hesam Shahravan, Antonia T. De Jong, Gang Chen, and Jumi A. Shin PMCID: PMC2568859 A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data Konrad U. Foerstner, Tobias Doerks, Christopher J. Creevey, Anja Doerks, and Peer Bork PMCID: PMC2568958 Shugoshin1 May Play Important Roles in Separation of Homologous Chromosomes and Sister Chromatids during Mouse Oocyte Meiosis Shen Yin, Jun-Shu Ai, Li-Hong Shi, Liang Wei, Ju Yuan, Ying-Chun Ouyang, Yi Hou, Da-Yuan Chen, Heide Schatten, and Qing-Yuan Sun PMCID: PMC2567865 Wnt5a Regulates Ventral Midbrain Morphogenesis and the Development of A9–A10 Dopaminergic Cells In Vivo Emma R. Andersson, Nilima Prakash, Lukas Cajanek, Eleonora Minina, Vitezslav Bryja, Lenka Bryjova, Terry P. Yamaguchi, Anita C. Hall, Wolfgang Wurst, and Ernest Arenas PMCID: PMC2568809 Tumor Necrosis Factor Receptor-Associated Factor 4 Is a Dynamic Tight Junction-Related Shuttle Protein Involved in Epithelium Homeostasis Valérie Kédinger, Fabien Alpy, Aurélie Baguet, Myriam Polette, Isabelle Stoll, Marie-Pierre Chenard, Catherine Tomasetto, and Marie-Christine Rio PMCID: PMC2568980 Genome-Wide Analysis of Single Nucleotide Polymorphisms Uncovers Population Structure in Northern Europe Elina Salmela, Tuuli Lappalainen, Ingegerd Fransson, Peter M. Andersen, Karin Dahlman-Wright, Andreas Fiebig, Pertti Sistonen, Marja-Liisa Savontaus, Stefan Schreiber, Juha Kere, and Päivi Lahermo PMCID: PMC2567036 TOR Regulates Cell Death Induced by Telomere Dysfunction in Budding Yeast Haiyan Qi, Yongjie Chen, Xuan Fu, Chao-Po Lin, X. F. Steven Zheng, and Leroy F. Liu PMCID: PMC2567032 OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling Lei Wang, Yunyuan Xu, Cui Zhang, Qibin Ma, Se-Hwan Joo, Seong-Ki Kim, Zhihong Xu, and Kang Chong PMCID: PMC2567845 Searching for the Majority: Algorithms of Voluntary Control Jin Fan, Kevin G. Guise, Xun Liu, and Hongbin Wang PMCID: PMC2567037 Two Estrogen Response Element Sequences Near the PCNA Gene Are Not Responsible for Its Estrogen-Enhanced Expression in MCF7 Cells Cheng Wang, Jie Yu, and Caleb B. Kallen PMCID: PMC2568806 Relevance of the Diversity among Members of the Trypanosoma
Cruzi Trans-Sialidase Family Analyzed with Camelids Single-Domain
Antibodies Laura Ratier, Mariela Urrutia, Gastón Paris, Laura Zarebski, Alberto C. Frasch, and Fernando A. Goldbaum PMCID: PMC2568053 The Specificity and Polymorphism of the MHC Class I Prevents the Global Adaptation of HIV-1 to the Monomorphic Proteasome and TAP Boris Schmid, V, Can Keşmir, and Rob J. de Boer PMCID: PMC2569417 Neural Basis of Self and Other Representation in Autism: An fMRI Study of Self-Face Recognition Lucina Q. Uddin, Mari S. Davies, Ashley A. Scott, Eran Zaidel, Susan Y. Bookheimer, Marco Iacoboni, and Mirella Dapretto PMCID: PMC2568959 Telomeric Expression Sites Are Highly Conserved in Trypanosoma brucei Christiane Hertz-Fowler, Luisa M. Figueiredo, Michael A. Quail, Marion Becker, Andrew Jackson, Nathalie Bason, Karen Brooks, Carol Churcher, Samah Fahkro, Ian Goodhead, Paul Heath, Magdalena Kartvelishvili, Karen Mungall, David Harris, Heidi Hauser, Mandy Sanders, David Saunders, Kathy Seeger, Sarah Sharp, Jesse E. Taylor, Danielle Walker, Brian White, Rosanna Young, George A. M. Cross, Gloria Rudenko, J. David Barry, Edward J. Louis, and Matthew Berriman PMCID: PMC2567434 Structures of SRP54 and SRP19, the Two Proteins that Organize the Ribonucleic Core of the Signal Recognition Particle from Pyrococcus furiosus Pascal F. Egea, Johanna Napetschnig, Peter Walter, and Robert M. Stroud PMCID: PMC2568955 HPV16 E7-Dependent Transformation Activates NHE1 through a PKA-RhoA-Iinduced Inhibition of p38alpha Rosa A. Cardone, Giovanni Busco, Maria R. Greco, Antonia Bellizzi, Rosita Accardi, Antonella Cafarelli, Stefania Monterisi, Pierluigi Carratù, Valeria Casavola, Angelo Paradiso, Massimo Tommasino, and Stephan J. Reshkin PMCID: PMC2568952 Implication of the F-Box Protein FBXL21 in Circadian Pacemaker Function in Mammals Hugues Dardente, Jorge Mendoza, Jean-Michel Fustin, Etienne Challet, and David G. Hazlerigg PMCID: PMC2568807 Reprogramming Primordial Germ Cells into Pluripotent Stem Cells Gabriela Durcova-Hills, Fuchou Tang, Gina Doody, Reuben Tooze, and M. Azim Surani PMCID: PMC2567847 New Insight into the Colonization Processes of Common Voles: Inferences from Molecular and Fossil Evidence Christelle Tougard, Elodie Renvoisé, Amélie Petitjean, and Jean-Pierre Quéré PMCID: PMC2570793 Strong Signature of Natural Selection within an FHIT Intron Implicated in Prostate Cancer Risk Yan Ding, Garrett Larson, Guillermo Rivas, Cathryn Lundberg, Louis Geller, Ching Ouyang, Jeffrey Weitzel, John Archambeau, Jerry Slater, Mary B. Daly, Al B. Benson, John M. Kirkwood, Peter J. O'Dwyer, Rebecca Sutphen, James A. Stewart, David Johnson, Magnus Nordborg, and Theodore G. Krontiris PMCID: PMC2568805 Cdx1 and c-Myc Foster the Initiation of Transdifferentiation of the Normal Esophageal Squamous Epithelium toward Barrett's Esophagus Douglas B. Stairs, Hiroshi Nakagawa, Andres Klein-Szanto, Shukriyyah D. Mitchell, Debra G. Silberg, John W. Tobias, John P. Lynch, and Anil K. Rustgi PMCID: PMC2568822 The Role of Alpha 6 Integrin in Prostate Cancer Migration and Bone Pain in a Novel Xenograft Model Tamara E. King, Sangita C. Pawar, Lisa Majuta, Isis C. Sroka, Danyel Wynn, Manolis C. Demetriou, Raymond B. Nagle, Frank Porreca, and Anne E. Cress PMCID: PMC2570216 Neural Correlates of Enhanced Visual Short-Term Memory for Angry Faces: An fMRI Study Margaret C. Jackson, Claudia Wolf, Stephen J. Johnston, Jane E. Raymond, and David E. J. Linden PMCID: PMC2568825 Osteoclasts Control Osteoblast Chemotaxis via PDGF-BB/PDGF Receptor Beta Signaling Maria Arantzazu Sanchez-Fernandez, Anne Gallois, Thilo Riedl, Pierre Jurdic, and Bernard Hoflack PMCID: PMC2569415 Effects of Lysosomal Membrane Protein Depletion on the Salmonella-Containing Vacuole Everett A. Roark and Kasturi Haldar PMCID: PMC2568857 Action Without Awareness: Reaching to an Object You Do Not Remember Seeing Matthew Heath, Anika Maraj, Bryan Godbolt, and Gordon Binsted PMCID: PMC2568811 GSK-3β Is Required for Memory Reconsolidation in Adult Brain Tetsuya Kimura, Shunji Yamashita, Shinobu Nakao, Jung-Mi Park, Miyuki Murayama, Tatsuya Mizoroki, Yuji Yoshiike, Naruhiko Sahara, and Akihiko Takashima PMCID: PMC2568810 Quorum Sensing Primes the Oxidative Stress Response in the Insect Endosymbiont, Sodalis glossinidius Mauricio H. Pontes, Markus Babst, Robert Lochhead, Kelly Oakeson, Kari Smith, and Colin Dale PMCID: PMC2568817 Bridging the Synaptic Gap: Neuroligins and Neurexin I in Apis mellifera Sunita Biswas, Robyn J. Russell, Colin J. Jackson, Maria Vidovic, Olga Ganeshina, John G. Oakeshott, and Charles Claudianos PMCID: PMC2570956 Two Distinct Modes of Hypoosmotic Medium-Induced Release of Excitatory Amino Acids and Taurine in the Rat Brain In Vivo Renée E. Haskew-Layton, Alena Rudkouskaya, Yiqiang Jin, Paul J. Feustel, Harold K. Kimelberg, and Alexander A. Mongin PMCID: PMC2568819 In Vitro Identification and Characterization of CD133pos Cancer Stem-Like Cells in Anaplastic Thyroid Carcinoma Cell Lines Giovanni Zito, Pierina Richiusa, Alessandra Bommarito, Elvira Carissimi, Leonardo Russo, Antonina Coppola, Monica Zerilli, Vito Rodolico, Angela Criscimanna, Marco Amato, Giuseppe Pizzolanti, Aldo Galluzzo, and Carla Giordano PMCID: PMC2568821 Dibutyltin Disrupts Glucocorticoid Receptor Function and Impairs Glucocorticoid-Induced Suppression of Cytokine Production Christel Gumy, Charlie Chandsawangbhuwana, Anna A. Dzyakanchuk, Denise V. Kratschmar, Michael E. Baker, and Alex Odermatt PMCID: PMC2568824 Roadless Wilderness Area Determines Forest Elephant Movements in the Congo Basin Stephen Blake, Sharon L. Deem, Samantha Strindberg, Fiona Maisels, Ludovic Momont, Inogwabini-Bila Isia, Iain Douglas-Hamilton, William B. Karesh, and Michael D. Kock PMCID: PMC2570334 Hyperferritinemia Is Associated with Insulin Resistance and Fatty Liver in Patients without Iron Overload Robert Brudevold, Torstein Hole, and Jens Hammerstrøm PMCID: PMC2570219 Nasal Delivery of an Adenovirus-Based Vaccine Bypasses Pre-Existing Immunity to the Vaccine Carrier and Improves the Immune Response in Mice Maria A. Croyle, Ami Patel, Kaylie N. Tran, Michael Gray, Yi Zhang, James E. Strong, Heinz Feldmann, and Gary P. Kobinger PMCID: PMC2569416 Gene Disruption of Plasmodium falciparum p52 Results in Attenuation of Malaria Liver Stage Development in Cultured Primary Human Hepatocytes Ben C. L. van Schaijk, Chris J. Janse, Geert-Jan van Gemert, Melissa R. van Dijk, Audrey Gego, Jean-Francois Franetich, Marga van de Vegte-Bolmer, Samir Yalaoui, Olivier Silvie, Stephen L. Hoffman, Andrew P. Waters, Dominique Mazier, Robert W. Sauerwein, and Shahid M. Khan PMCID: PMC2568858 Modeling the Fitness Consequences of a Cyanophage-Encoded Photosynthesis Gene Jason G. Bragg and Sallie W. Chisholm PMCID: PMC2570332 Analyses and Comparison of Accuracy of Different Genotype Imputation Methods Yu-Fang Pei, Jian Li, Lei Zhang, Christopher J. Papasian, and Hong-Wen Deng PMCID: PMC2569208 Medicine in the Popular Press: The Influence of the Media on Perceptions of Disease Meredith E. Young, Geoffrey R. Norman, and Karin R. Humphreys PMCID: PMC2569209 A Quantitative and Dynamic Model for Plant Stem Cell Regulation Florian Geier, Jan U. Lohmann, Moritz Gerstung, Annette T. Maier, Jens Timmer, and Christian Fleck PMCID: PMC2570333 Coincidence between Transcriptome Analyses on Different Microarray Platforms Using a Parametric Framework Tomokazu Konishi, Fumikazu Konishi, Shigeru Takasaki, Kohei Inoue, Koji Nakayama, and Akihiko Konagaya PMCID: PMC2570215 Neural Correlates of Hate Semir Zeki and John Paul Romaya PMCID: PMC2569212 Antibody-Mediated Growth Inhibition of Plasmodium falciparum: Relationship to Age and Protection from Parasitemia in Kenyan Children and Adults Arlene E. Dent, Elke S. Bergmann-Leitner, Danny W. Wilson, Daniel J. Tisch, Rhonda Kimmel, John Vulule, Peter Odada Sumba, James G. Beeson, Evelina Angov, Ann M. Moormann, and James W. Kazura PMCID: PMC2570335 Anti-EGFR Antibody Efficiently and Specifically Inhibits Human TSC2−/− Smooth Muscle Cell Proliferation. Possible Treatment Options for TSC and LAM Elena Lesma, Vera Grande, Silvia Ancona, Stephana Carelli, Anna Maria Di Giulio, and Alfredo Gorio PMCID: PMC2570214 Beta Cells within Single Human Islets Originate from Multiple Progenitors Raphaël Scharfmann, Xiangwei Xiao, Harry Heimberg, Jacques Mallet, and Philippe Ravassard PMCID: PMC2571119 Orientation of the Calcium Channel β Relative to the α12.2 Subunit Is Critical for Its Regulation of Channel Activity Iuliia Vitko, Aleksandr Shcheglovitov, Joel P. Baumgart, Imilla I. Arias-Olguín, Janet Murbartián, Juan Manuel Arias, and Edward Perez-Reyes PMCID: PMC2570331 Interactions between HIV-1 Reverse Transcriptase and the Downstream Template Strand in Stable Complexes with Primer-Template Wiriya Rutvisuttinunt, Peter R. Meyer, and Walter A. Scott PMCID: PMC2570493 Trans-Epithelial Immune Cell Transfer during Suckling Modulates Delayed-Type Hypersensitivity in Recipients as a Function of Gender Lisa J. Ma, Barbara Walter, Ariel DeGuzman, H. Konrad Muller, and Ameae M. Walker PMCID: PMC2569205 HFR1 Is Crucial for Transcriptome Regulation in the Cryptochrome 1-Mediated Early Response to Blue Light in Arabidopsis thaliana Xiao-Ning Zhang, Yingjie Wu, John W. Tobias, Brian P. Brunk, Gerald F. Deitzer, and Dongmei Liu PMCID: PMC2570330 Anthrax Edema Toxin Modulates PKA- and CREB-Dependent Signaling in Two Phases Andrea Puhar, Federica Dal Molin, Stéphanie Horvath, Daniel Ladants, and Cesare Montecucco PMCID: PMC2569206 SH2-Inositol Phosphatase 1 Negatively Influences Early Megakaryocyte Progenitors Lia E. Perez, Caroline Desponts, Nancy Parquet, and William G. Kerr PMCID: PMC2569203 Practicing a Musical Instrument in Childhood is Associated with Enhanced Verbal Ability and Nonverbal Reasoning Marie Forgeard, Ellen Winner, Andrea Norton, and Gottfried Schlaug PMCID: PMC2570220 Overall Alteration of Circadian Clock Gene Expression in the Chestnut Cold Response Cristian Ibañez, Alberto Ramos, Paloma Acebo, Angela Contreras, Rosa Casado, Isabel Allona, and Cipriano Aragoncillo PMCID: PMC2569414 Silencing and Nuclear Repositioning of the λ5 Gene Locus at the Pre-B Cell Stage Requires Aiolos and OBF-1 Alexander Karnowski, Chun Cao, Gabriele Matthias, Sebastian Carotta, Lynn M. Corcoran, Inga-Lill Martensson, Jane A. Skok, and Patrick Matthias PMCID: PMC2571989 Evolutionary Genomics Reveals Lineage-Specific Gene Loss and Rapid Evolution of a Sperm-Specific Ion Channel Complex: CatSpers and CatSperβ Xinjiang Cai and David E. Clapham PMCID: PMC2572835 Halothiobacillus neapolitanus Carboxysomes Sequester Heterologous and Chimeric RubisCO Species Balaraj B. Menon, Zhicheng Dou, Sabine Heinhorst, Jessup M. Shively, and Gordon C. Cannon PMCID: PMC2570492 Acquisition of Growth-Inhibitory Antibodies against Blood-Stage Plasmodium falciparum Fiona J. McCallum, Kristina E. M. Persson, Cleopatra K. Mugyenyi, Freya J. I. Fowkes, Julie A. Simpson, Jack S. Richards, Thomas N. Williams, Kevin Marsh, and James G. Beeson PMCID: PMC2570221 Patterns of Hybrid Loss of Imprinting Reveal Tissue- and Cluster-Specific Regulation Christopher D. Wiley, Harry H. Matundan, Amanda R. Duselis, Alison T. Isaacs, and Paul B. Vrana PMCID: PMC2570336 Aboveground Herbivory Shapes the Biomass Distribution and Flux of Soil Invertebrates Christian Mulder, Henri A. Den Hollander, and A. Jan Hendriks PMCID: PMC2570614 MiR-433 and miR-127 Arise from Independent Overlapping Primary Transcripts Encoded by the miR-433-127 Locus Guisheng Song and Li Wang PMCID: PMC2570487 Cataloging Coding Sequence Variations in Human Genome Databases Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, and Jong-Won Kim PMCID: PMC2570488 Identification of Serotype in Culture Negative Pneumococcal Meningitis Using Sequential Multiplex PCR: Implication for Surveillance and Vaccine Design Samir K. Saha, Gary L. Darmstadt, Abdullah H. Baqui, Belal Hossain, Maksuda Islam, Dona Foster, Hassan Al-Emran, Aliya Naheed, Shams El Arifeen, Stephen P. Luby, Mathuram Santosham, and Derrick Crook PMCID: PMC2571985 Magnitude and Complexity of Rectal Mucosa HIV-1-Specific CD8+ T-Cell Responses during Chronic Infection Reflect Clinical Status J. William Critchfield, Delandy H. Young, Timothy L. Hayes, Jerome V. Braun, Juan C. Garcia, Richard B. Pollard, and Barbara L. Shacklett PMCID: PMC2570490 Identification and Characterisation of Pseudomonas 16S Ribosomal DNA from Ileal Biopsies of Children with Crohn's Disease Josef Wagner, Kirsty Short, Anthony G. Catto-Smith, Don J. S. Cameron, Ruth F. Bishop, and Carl D. Kirkwood PMCID: PMC2572839 The Recently Identified P2Y-Like Receptor GPR17 Is a Sensor of Brain Damage and a New Target for Brain Repair Davide Lecca, Maria Letizia Trincavelli, Paolo Gelosa, Luigi Sironi, Paolo Ciana, Marta Fumagalli, Giovanni Villa, Claudia Verderio, Carlotta Grumelli, Uliano Guerrini, Elena Tremoli, Patrizia Rosa, Serena Cuboni, Claudia Martini, Annalisa Buffo, Mauro Cimino, and Maria P. Abbracchio PMCID: PMC2570486 Net Efficacy Adjusted for Risk (NEAR): A Simple Procedure for Measuring Risk:Benefit Balance José N. Boada, Carlos Boada, Mar García-Sáiz, Marcelino García, Eduardo Fernández, and Eugenio Gómez PMCID: PMC2570485 Deficiency of FLCN in Mouse Kidney Led to Development of Polycystic Kidneys and Renal Neoplasia Jindong Chen, Kunihiko Futami, David Petillo, Jun Peng, Pengfei Wang, Jared Knol, Yan Li, Sok-Kean Khoo, Dan Huang, Chao-Nan Qian, Ping Zhao, Karl Dykyma, Racheal Zhang, Brian Cao, Ximing J. Yang, Kyle Furge, Bart O. Williams, and Bin Tean Teh PMCID: PMC2570491 Evolutionary Changes in the Complexity of the Tectum of Nontetrapods: A Cladistic Approach Caio Maximino PMCID: PMC2571994 Concept, Design and Implementation of a Cardiovascular Gene-Centric 50 K SNP Array for Large-Scale Genomic Association Studies Brendan J. Keating, Sam Tischfield, Sarah S. Murray, Tushar Bhangale, Thomas S. Price, Joseph T. Glessner, Luana Galver, Jeffrey C. Barrett, Struan F. A. Grant, Deborah N. Farlow, Hareesh R. Chandrupatla, Mark Hansen, Saad Ajmal, George J. Papanicolaou, Yiran Guo, Mingyao Li, Stephanie DerOhannessian, Paul I. W. de Bakker, Swneke D. Bailey, Alexandre Montpetit, Andrew C. Edmondson, Kent Taylor, Xiaowu Gai, Susanna S. Wang, Myriam Fornage, Tamim Shaikh, Leif Groop, Michael Boehnke, Alistair S. Hall, Andrew T. Hattersley, Edward Frackelton, Nick Patterson, Charleston W. K. Chiang, Cecelia E. Kim, Richard R. Fabsitz, Willem Ouwehand, Alkes L. Price, Patricia Munroe, Mark Caulfield, Thomas Drake, Eric Boerwinkle, David Reich, A. Stephen Whitehead, Thomas P. Cappola, Nilesh J. Samani, A. Jake Lusis, Eric Schadt, James G. Wilson, Wolfgang Koenig, Mark I. McCarthy, Sekar Kathiresan, Stacey B. Gabriel, Hakon Hakonarson, Sonia S. Anand, Muredach Reilly, James C. Engert, Deborah A. Nickerson, Daniel J. Rader, Joel N. Hirschhorn, and Garret A. FitzGerald PMCID: PMC2571995 Amplification of cox2 (~620 bp) from 2 mg of Up to 129 Years Old Herbarium Specimens, Comparing 19 Extraction Methods and 15 Polymerases Sabine Telle and Marco Thines PMCID: PMC2572190 A New Method for Forensic DNA Analysis of the Blood Meal in Chagas Disease Vectors Demonstrated Using Triatoma infestans from Chuquisaca, Bolivia Juan Carlos Pizarro and Lori Stevens PMCID: PMC2570791 The Co-Operonic PE25/PPE41 Protein Complex of Mycobacterium tuberculosis Elicits Increased Humoral and Cell Mediated Immune Response Smanla Tundup, Niteen Pathak, M. Ramanadham, Sangita Mukhopadhyay, K. J. R. Murthy, Nasreen Z. Ehtesham, and Seyed E. Hasnain PMCID: PMC2570489 Width of Gene Expression Profile Drives Alternative Splicing Daniel Wegmann, Isabelle Dupanloup, and Laurent Excoffier PMCID: PMC2575406 Alteration of the Cortical Actin Cytoskeleton Deregulates Ca2+ Signaling, Monospermic Fertilization, and Sperm Entry A. Puppo, Jong T. Chun, Giovanni Gragnaniello, Ezio Garante, and Luigia Santella PMCID: PMC2570615 FastBLAST: Homology Relationships for Millions of Proteins Morgan N. Price, Paramvir S. Dehal, and Adam P. Arkin PMCID: PMC2571987 Genetically-Based Olfactory Signatures Persist Despite Dietary Variation Jae Kwak, Alan Willse, Koichi Matsumura, Maryanne Curran Opiekun, Weiguang Yi, George Preti, Kunio Yamazaki, and Gary K. Beauchamp PMCID: PMC2571990 Pre-miRNA Loop Nucleotides Control the Distinct Activities of mir-181a-1 and mir-181c in Early T Cell Development Gwen Liu, Hyeyoung Min, Sibiao Yue, and Chang-Zheng Chen PMCID: PMC2575382 Growth Arrest of BCR-ABL Positive Cells with a Sequence-Specific Polyamide-Chlorambucil Conjugate C. James Chou, Thomas O'Hare, Sophie Lefebvre, David Alvarez, Jeffrey W. Tyner, Christopher A. Eide, Brian J. Druker, and Joel M. Gottesfeld PMCID: PMC2571993 FitEM2EM—Tools for Low Resolution Study of Macromolecular Assembly and Dynamics Ziv Frankenstein, Joseph Sperling, Ruth Sperling, and Miriam Eisenstein PMCID: PMC2572833 Sequence Specificity of BAL 31 Nuclease for ssDNA Revealed by Synthetic Oligomer Substrates Containing Homopolymeric Guanine Tracts April Marrone and Jack Ballantyne PMCID: PMC2570716 Toll-Like Receptor-4 Coordinates the Innate Immune Response of the Kidney to Renal Ischemia/Reperfusion Injury Wilco P. Pulskens, Gwendoline J. Teske, Loes M. Butter, Joris J. Roelofs, Tom van der Poll, Sandrine Florquin, and Jaklien C. Leemans PMCID: PMC2570789 Raft-Dependent Endocytosis of Autocrine Motility Factor/Phosphoglucose Isomerase: A Potential Drug Delivery Route for Tumor Cells Liliana D. Kojic, Sam M. Wiseman, Fariba Ghaidi, Bharat Joshi, Hinyu Nedev, H. Uri Saragovi, and Ivan R. Nabi PMCID: PMC2575378 Independence of Echo-Threshold and Echo-Delay in the Barn Owl Brian S. Nelson and Terry T. Takahashi PMCID: PMC2571984 Expression Patterns of Protein Kinases Correlate with Gene Architecture and Evolutionary Rates Aleksey Y. Ogurtsov, Leonardo Mariño-Ramírez, Gibbes R. Johnson, David Landsman, Svetlana A. Shabalina, and Nikolay A. Spiridonov PMCID: PMC2572838 Identification of Novel Single Nucleotide Polymorphisms in Inflammatory Genes as Risk Factors Associated with Trachomatous Trichiasis Berna Atik, Troy A. Skwor, Ram Prasad Kandel, Bassant Sharma, Him Kant Adhikari, Lori Steiner, Henry Erlich, and Deborah Dean PMCID: PMC2572999 HMGB1-Dependent Triggering of HIV-1 Replication and Persistence in Dendritic Cells as a Consequence of NK-DC Cross-Talk Héla Saïdi, Marie-Thérèse Melki, and Marie-Lise Gougeon PMCID: PMC2571988 Mosaic Convergence of Rodent Dentitions Vincent Lazzari, Cyril Charles, Paul Tafforeau, Monique Vianey-Liaud, Jean-Pierre Aguilar, Jean-Jacques Jaeger, Jacques Michaux, and Laurent Viriot PMCID: PMC2572836 Molecular Epidemiology of HCV Monoinfection and HIV/HCV Coinfection in Injection Drug Users in Liuzhou, Southern China Yi Tan, Qi Hou Wei, Liu Jun Chen, Pui Chung Chan, Wen Sheng Lai, Ming Liang He, Hsiang Fu Kung, and Shui Shan Lee PMCID: PMC2571986 UPF1, a Conserved Nonsense-Mediated mRNA Decay Factor, Regulates Cyst Wall Protein Transcripts in Giardia lamblia Yi-Hsiu Chen, Li-Hsin Su, Yu-Chang Huang, Yi-Ting Wang, Yu-Yun Kao, and Chin-Hung Sun PMCID: PMC2572189 In Silico Identification of Specialized Secretory-Organelle Proteins in Apicomplexan Parasites and In Vivo Validation in Toxoplasma gondii ZhongQiang Chen, Omar S. Harb, and David S. Roos PMCID: PMC2575384 Mitochondrial Fusion Is Increased by the Nuclear Coactivator PGC-1β Marc Liesa, Bárbara Borda-d'Água, Gema Medina-Gómez, Christopher J. Lelliott, José Carlos Paz, Manuel Rojo, Manuel Palacín, Antonio Vidal-Puig, and Antonio Zorzano PMCID: PMC2570954 AMP-Activated Protein Kinase-Regulated Activation of the PGC-1α Promoter in Skeletal Muscle Cells Isabella Irrcher, Vladimir Ljubicic, Angie F. Kirwan, and David A. Hood PMCID: PMC2570798 Gender Differences in Genetic Risk Profiles for Cardiovascular Disease Kaisa Silander, Mervi Alanne, Kati Kristiansson, Olli Saarela, Samuli Ripatti, Kirsi Auro, Juha Karvanen, Sangita Kulathinal, Matti Niemelä, Pekka Ellonen, Erkki Vartiainen, Pekka Jousilahti, Janna Saarela, Kari Kuulasmaa, Alun Evans, Markus Perola, Veikko Salomaa, and Leena Peltonen PMCID: PMC2574036 Fully Immunocompetent CD8+ T Lymphocytes Are Present in Autologous Haematopoietic Stem Cell Transplantation Recipients Despite an Ineffectual T-Helper Response Alessandra Bandera, Daria Trabattoni, Michela Pacei, Francesca Fasano, Elisa Suardi, Miriam Cesari, Giulia Marchetti, Enrico M. Pogliani, Fabio Franzetti, Mario Clerici, and Andrea Gori PMCID: PMC2570790 A Novel Gene Signature for Molecular Diagnosis of Human Prostate Cancer by RT-qPCR Federica Rizzi, Lucia Belloni, Pellegrino Crafa, Mirca Lazzaretti, Daniel Remondini, Stefania Ferretti, Piero Cortellini, Arnaldo Corti, and Saverio Bettuzzi PMCID: PMC2570792 Common Genetic Origins for EEG, Alcoholism and Anxiety: The Role of CRH-BP Mary-Anne Enoch, Pei-Hong Shen, Francesca Ducci, Qiaoping Yuan, Jixia Liu, Kenneth V. White, Bernard Albaugh, Colin A. Hodgkinson, and David Goldman PMCID: PMC2575401 The Political Gender Gap: Gender Bias in Facial Inferences that Predict Voting Behavior Joan Y. Chiao, Nicholas E. Bowman, and Harleen Gill PMCID: PMC2573960 Corrections Correction: Molecular Subsets in the Gene Expression Signatures of Scleroderma Skin Ausra Milano, Sarah A. Pendergrass, Jennifer L. Sargent, Lacy K. George, Timothy H. McCalmont, M. Kari Connolly, and Michael L. Whitfield PMCID: PMC2655218 Corrects: Ausra Milano, et al. Molecular Subsets in the Gene Expression Signatures of Scleroderma Skin. PLoS ONE. 2008; 3(7): e2696. Correction: Establishment of a New Cell Line from Lepidopteran Epidermis and Hormonal Regulation on the Genes Hong-Lian Shao, Wei-Wei Zheng, Peng-Cheng Liu, Qian Wang, Jin-Xing Wang, and Xiao-Fan Zhao PMCID: PMC2645278 Corrects: Hong-Lian Shao, et al. Establishment of a New Cell Line from Lepidopteran Epidermis and Hormonal Regulation on the Genes. PLoS ONE. 2008; 3(9): e3127. Correction: Delay-Induced Transient Increase and Heterogeneity in Gene Expression in Negatively Auto-Regulated Gene Circuits R. Maithreye, Ram Rup Sarkar, Veena K. Parnaik, and Somdatta Sinha PMCID: PMC2651602 Corrects: R. Maithreye, et al. Delay-Induced Transient Increase and Heterogeneity in Gene Expression in Negatively Auto-Regulated Gene Circuits. PLoS ONE. 2008; 3(8): e2972. Correction: Influenza A H5N1 Clade 2.3.4 Virus with a Different Antiviral Susceptibility Profile Replaced Clade 1 Virus in Humans in Northern Vietnam Mai T. Q. Le, Heiman F. L. Wertheim, Hien D. Nguyen, Walter Taylor, Phuong V. M. Hoang, Cuong D. Vuong, Hang L. K. Nguyen, Ha H. Nguyen, Thai Q. Nguyen, Trung V. Nguyen, Trang D. Van, Bich T. Ngoc, Thinh N. Bui, Binh G. Nguyen, Liem T. Nguyen, San T. Luong, Phuc H. Phan, Hung V. Pham, Tung Nguyen, Annette Fox, Cam V. Nguyen, Ha Q. Do, Martin Crusat, Jeremy Farrar, Hien T. Nguyen, Menno D. de Jong, and Peter Horby PMCID: PMC2590761 Corrects: Mai T. Q. Le, et al. Influenza A H5N1 Clade 2.3.4 Virus with a Different Antiviral Susceptibility Profile Replaced Clade 1 Virus in Humans in Northern Vietnam. PLoS ONE. 2008; 3(10): e3339. Correction: Delay-Induced Transient Increase and Heterogeneity in Gene Expression in Negatively Auto-Regulated Gene Circuits R. Maithreye, Ram Rup Sarkar, Veena K. Parnaik, and Somdatta Sinha PMCID: PMC2655217 Corrects: R. Maithreye, et al. Delay-Induced Transient Increase and Heterogeneity in Gene Expression in Negatively Auto-Regulated Gene Circuits. PLoS ONE. 2008; 3(8): e2972. Correction: Live Imaging of Cysteine-Cathepsin Activity Reveals Dynamics of Focal Inflammation, Angiogenesis, and Polyp Growth Elias Gounaris, Ching H. Tung, Clifford Restaino, René Maehr, Rainer Kohler, Johanna A. Joyce, Hidde L. Ploegh, Terrence A. Barrett, Ralph Weissleder, and Khashayarsha Khazaie PMCID: PMC2572845 Corrects: Elias Gounaris, et al. Live Imaging of Cysteine-Cathepsin Activity Reveals Dynamics of Focal Inflammation, Angiogenesis, and Polyp Growth. PLoS ONE. 2008; 3(8): e2916. Correction: Leptin Replacement Improves Cognitive Development Gilberto J. Paz-Filho, Talin Babikian, Robert Asarnow, Tuncay Delibasi, Karin Esposito, Halil K. Erol, Ma-Li Wong, and Julio Licinio PMCID: PMC2581118 Corrects: Gilberto J. Paz-Filho, et al. Leptin Replacement Improves Cognitive Development. PLoS ONE. 2008; 3(8): e3098. Correction: Leptin Replacement Improves Cognitive Development Gilberto J. Paz-Filho, Talin Babikian, Robert Asarnow, Tuncay Delibasi, Karin Esposito, Halil K. Erol, Ma-Li Wong, and Julio Licinio PMCID: PMC2581119 Corrects: Gilberto J. Paz-Filho, et al. Leptin Replacement Improves Cognitive Development. PLoS ONE. 2008; 3(8): e3098. |
