Supplemental Information For Recent Publications

Supplemental Information for Recent Publications

Follow the links below to access supporting data from the corresponding publications:

Parker H.G., Kim L.V., Sutter N.B., Carlson S., Lorentzen T.D., Malek T.B., Johnson G.J., DeFrance H.B., Ostrander E.A., and Kruglyak L. (2004) Genetic Structure of the Purebred Domestic Dog. Science, Vol 304, Issue 5674, 1160-1164 , 21 May 2004

Sidjanin D.J., Lowe J.K., McElwee J.L., Milne B.S., Phippen T.M., Sargan D.R., Aguirre G.D., Acland G.M., Ostrander E.A. (2002) Canine CNGB3 mutations establish cone degeneration as orthologous to the human achromatopsia locus ACHM3. Human Molecular Genetics 11(16): 1823-1833

Lowe J.K., Kukekova A.V., Kirkness E.F., Langlois M.C., Aguirre G.D., Acland G.M., Ostrander E.A. (2003) Linkage Mapping of the Primary Disease Locus for Collie Eye Anomaly. Genomics 82: 86-95

Parker, H.G., Kruglyak, K, Ostrander, E.A., Molecular Genetic Analysis of a Putative Domestic Dog Clone. (2006) Nature, 440(7081):E1-2

Protocols

Supplemental Info from other Ostrander Lab publications (not related to the Dog Genome Project):

Ramirez C.J., Fleming M.A., Potter J.D., Ostrander G.K., Ostrander E.A. (2004) Marsupial BRCA1: conserved regions in mammals and the potential effect of missense changes. Oncogene. Mar 4; 23(9):1780-8
- Maximum likelihood phylogenetic tree of 2,529 bp of BRCA1 exon 11 marsupial sequences with the human sequence as the outgroup. The values adjacent to internal nodes represent the bootstrap support based on 500 trees. Nodes with no value have <50% bootstrap support and are collapsed.
- Bayesian phylogenetic tree of 2,529 bp of BRCA1 exon 11 marsupial sequences with the human sequence as the outgroup. The values represent the posterior probability that the clade is reliable based on a consensus of 800 trees. Nodes with no value have <0.5 support and are collapsed.
- Marsupial Nucleotide Alignment
- Mammal Alignment
- Three Class Alignment