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Volume 11(11);  November 2002
Articles
Heterogeneity in the structural dynamics of Sulfolobus solfataricus β-glycosidase revealed by electron paramagnetic resonance and frequency domain fluorometry
Evgenia Lozinsky, Ferdinando Febbraio, Alexander I. Shames, Gertz I. Likhtenshtein, Ettore Bismuto, and Roberto Nucci
Protein Sci. 2002 November; 11(11): 2535–2544.
PMCID: PMC2373732
Structural-based mutational analysis of d-aminoacylase from Alcaligenes faecalis DA1
Cheng-Sheng Hsu, Wen-Lin Lai, Wei-Wei Chang, Shwu-Huey Liaw, and Ying-Chieh Tsai
Protein Sci. 2002 November; 11(11): 2545–2550.
PMCID: PMC2373723
Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function
Cosmin Saveanu, Simona Miron, Tudor Borza, Constantin T. Craescu, Gilles Labesse, Cristina Gagyi, Aurel Popescu, Francis Schaeffer, Abdelkader Namane, Christine Laurent-Winter, Octavian Bârzu, and Anne-Marie Gilles
Protein Sci. 2002 November; 11(11): 2551–2560.
PMCID: PMC2373726
Structural basis for the enhanced thermal stability of alcohol dehydrogenase mutants from the mesophilic bacterium Clostridium beijerinckii: contribution of salt bridging
Oren Bogin, Inna Levin, Yael Hacham, Shoshana Tel-Or, Moshe Peretz, Felix Frolow, and Yigal Burstein
Protein Sci. 2002 November; 11(11): 2561–2574.
PMCID: PMC2373725
The dimeric dihydroorotate dehydrogenase A from Lactococcus lactis dissociates reversibly into inactive monomers
Mette Brimheim Ottosen, Olof Björnberg, Sofie Nørager, Sine Larsen, Bruce Allan Palfey, and Kaj Frank Jensen
Protein Sci. 2002 November; 11(11): 2575–2583.
PMCID: PMC2373731
Immunochemical pulsed-labeling characterization of intermediates during hen lysozyme oxidative folding
Nicole M. Jarrett, Lisa Djavadi-Ohaniance, Richard C. Willson, Hideki Tachibana, and Michel E. Goldberg
Protein Sci. 2002 November; 11(11): 2584–2595.
PMCID: PMC2373722
Characterization of the LDL-A module mutants of Tva, the subgroup A Rous sarcoma virus receptor, and the implications in protein folding
Qing-Yin Wang, Balaji Manicassamy, Xuemei Yu, Klavs Dolmer, Peter G.W. Gettins, and Lijun Rong
Protein Sci. 2002 November; 11(11): 2596–2605.
PMCID: PMC2373729
MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
Angel R. Ortiz, Charlie E.M. Strauss, and Osvaldo Olmea
Protein Sci. 2002 November; 11(11): 2606–2621.
PMCID: PMC2373724
Molecular dynamics of the FixJ receiver domain: movement of the β4–α4 loop correlates with the in and out flip of Phe101
Philippe Roche, Liliane Mouawad, David Perahia, Jean-Pierre Samama, and Daniel Kahn
Protein Sci. 2002 November; 11(11): 2622–2630.
PMCID: PMC2373730
Construction and characterization of protein libraries composed of secondary structure modules
Tomoaki Matsuura, Andreas Ernst, and Andreas Plückthun
Protein Sci. 2002 November; 11(11): 2631–2643.
PMCID: PMC2373733
Genetic analysis of response regulator activation in bacterial chemotaxis suggests an intermolecular mechanism
Sandra Da Re, Tatiana Tolstykh, Peter M. Wolanin, and Jeffry B. Stock
Protein Sci. 2002 November; 11(11): 2644–2654.
PMCID: PMC2373717
Construction of a fluorescent biosensor family
Robert M. De Lorimier, J. Jeff Smith, Mary A. Dwyer, Loren L. Looger, Kevin M. Sali, Chad D. Paavola, Shahir S. Rizk, Shamil Sadigov, David W. Conrad, Leslie Loew, and Homme W. Hellinga
Protein Sci. 2002 November; 11(11): 2655–2675.
PMCID: PMC2373719
Microwave-enhanced enzyme reaction for protein mapping by mass spectrometry: A new approach to protein digestion in minutes
Birendra N. Pramanik, Urooj A. Mirza, Yao Hain Ing, Yan-Hui Liu, Peter L. Bartner, Patricia C. Weber, and Ajay K. Bose
Protein Sci. 2002 November; 11(11): 2676–2687.
PMCID: PMC2373716
Sequence analysis of an artificial family of RNA-binding peptides
Jeffrey E. Barrick and Richard W. Roberts
Protein Sci. 2002 November; 11(11): 2688–2696.
PMCID: PMC2373718
Functional aspects of co-variant surface charges in an antibody fragment
Nicolas Hugo, Virginie Lafont, Mervyn Beukes, and Danièle Altschuh
Protein Sci. 2002 November; 11(11): 2697–2705.
PMCID: PMC2373727
13C CP/MAS NMR study on structural heterogeneity in Bombyx mori silk fiber and their generation by stretching
Tetsuo Asakura and Juming Yao
Protein Sci. 2002 November; 11(11): 2706–2713.
PMCID: PMC2373734
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
Hongyi Zhou and Yaoqi Zhou
Protein Sci. 2002 November; 11(11): 2714–2726.
PMCID: PMC2373736
α-Crystallin and ATP facilitate the in vitro renaturation of xylanase: enhancement of refolding by metal ions
Devyani Nath, Urmila Rawat, Ramakrishnan Anish, and Mala Rao
Protein Sci. 2002 November; 11(11): 2727–2734.
PMCID: PMC2373735
For the Record
Prediction of the disulfide-bonding state of cysteines in proteins at 88% accuracy
Pier Luigi Martelli, Piero Fariselli, Luca Malaguti, and Rita Casadio
Protein Sci. 2002 November; 11(11): 2735–2739.
PMCID: PMC2373728
The role of helix stabilizing residues in GCN4 basic region folding and DNA binding
Jessica J. Hollenbeck, Diana L. McClain, and Martha G. Oakley
Protein Sci. 2002 November; 11(11): 2740–2747.
PMCID: PMC2373721
A statistically derived parameterization for the collagen triple-helix
Jan K. Rainey and M. Cynthia Goh
Protein Sci. 2002 November; 11(11): 2748–2754.
PMCID: PMC2373720
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