| | This journal provides immediate access to some articles. Review Structural genomics: Computational methods for structure analysis Sharon Goldsmith-Fischman and Barry Honig PMCID: PMC2323979 Articles Structure of the Escherichia coli malate synthase G:pyruvate:acetyl-coenzyme A abortive ternary complex at 1.95 Å resolution David M. Anstrom, Karen Kallio, and S. James Remington PMCID: PMC2323980 Archaeal signal peptides—A comparative survey at the genome level Sonia L. Bardy, Jerry Eichler, and Ken F. Jarrell PMCID: PMC2323981 Solution structure of Pi4, a short four-disulfide-bridged scorpion toxin specific of potassium channels J. Iñaki Guijarro, Sarrah M’Barek, Froylan Gómez-Lagunas, Damien Garnier, Hervé Rochat, Jean-Marc Sabatier, Lourrival D. Possani, and Muriel Delepierre PMCID: PMC2323982 The structure of Pseudomonas P51 Cl-muconate lactonizing enzyme: Co-evolution of structure and dynamics with the dehalogenation function Tommi Kajander, Lari Lehtiö, Michael Schlömann, and Adrian Goldman PMCID: PMC2323983 Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein–nucleic acid complex crystals Katherine A. Kantardjieff and Bernhard Rupp PMCID: PMC2323984 Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family Tong Liu, Ana Rojas, Yuzhen Ye, and Adam Godzik PMCID: PMC2323985 Energy landscape and dynamics of the β-hairpin G peptide and its isomers: Topology and sequences Buyong Ma and Ruth Nussinov PMCID: PMC2323986 Calculating pKa values in enzyme active sites Jens Erik Nielsen and J. Andrew McCammon PMCID: PMC2323987 Structural signatures of the complex formed between 3-nitro-4-hydroxybenzoate and the Zn(II)-substituted R6 insulin hexamer Helle Birk Olsen, Melissa R. Leuenberger-Fisher, Webe Kadima, Dan Borchardt, Niels C. Kaarsholm, and Michael F. Dunn PMCID: PMC2323988 The binding of β- and γ-cyclodextrins to glycogen phosphorylase b: Kinetic and crystallographic studies Nikos Pinotsis, Demetres D. Leonidas, Evangelia D. Chrysina, Nikos G. Oikonomakos, and Irene M. Mavridis PMCID: PMC2323989 Solution structure of the C-terminal domain from poly(A)-binding protein in Trypanosoma cruzi: A vegetal PABC domain Nadeem Siddiqui, Guennadi Kozlov, Iván D’Orso, Jean-François Trempe, and Kalle Gehring PMCID: PMC2323990 Molecular modeling of the membrane targeting of phospholipase C pleckstrin homology domains Shaneen M. Singh and Diana Murray PMCID: PMC2323991 Crystal structure of mycothiol synthase (Rv0819) from Mycobacterium tuberculosis shows structural homology to the GNAT family of N-acetyltransferases Matthew W. Vetting, Steven L. Roderick, Michael Yu, and John S. Blanchard PMCID: PMC2323992 Site2 binding energetics of the regulatory step of growth hormone–induced receptor homodimerization Scott T.R. Walsh, Liz M. Jevitts, Juliesta E. Sylvester, and Anthony A. Kossiakoff PMCID: PMC2323993 The solution structure of bovine pancreatic trypsin inhibitor at high pressure Michael P. Williamson, Kazuyuki Akasaka, and Mohamed Refaee PMCID: PMC2323994 Dissecting interdomain communication within cAPK regulatory subunit type IIβ using enhanced amide hydrogen/deuterium exchange mass spectrometry (DXMS) Kerri M. Zawadzki, Yoshitomo Hamuro, Jack S. Kim, Siv Garrod, David D. Stranz, Susan S. Taylor, and Virgil L. Woods, Jr. PMCID: PMC2323995 Efficient biosynthetic incorporation of tryptophan and indole analogs in an integral membrane protein Jaap Broos, Edi Gabellieri, Esther Biemans-Oldehinkel, and Giovanni B. Strambini PMCID: PMC2323996 A graph-theory algorithm for rapid protein side-chain prediction Adrian A. Canutescu, Andrew A. Shelenkov, and Roland L. Dunbrack, Jr. PMCID: PMC2323997 Rationally selected basis proteins: A new approach to selecting proteins for spectroscopic secondary structure analysis Keith A. Oberg, Jean-Marie Ruysschaert, and Erik Goormaghtigh PMCID: PMC2323998 Discrete restraint-based protein modeling and the Cα-trace problem Mark A. DePristo, Paul I.W. de Bakker, Reshma P. Shetty, and Tom L. Blundell PMCID: PMC2323999 Opposing effects of phosphoenolpyruvate and pyruvate with Mg2+ on the conformational stability and dimerization of phosphotransferase enzyme I from Escherichia coli Mariana N. Dimitrova, Alan Peterkofsky, and Ann Ginsburg PMCID: PMC2324000 Contact order revisited: Influence of protein size on the folding rate Dmitry N. Ivankov, Sergiy O. Garbuzynskiy, Eric Alm, Kevin W. Plaxco, David Baker, and Alexei V. Finkelstein PMCID: PMC2324001 Prospects and limitations of the rational engineering of fibrillar collagens Ireneusz Majsterek, Erin McAdams, Eijiro Adachi, Shirish T. Dhume, and Andrzej Fertala PMCID: PMC2324002 Refolding out of guanidine hydrochloride is an effective approach for high-throughput structural studies of small proteins Karen L. Maxwell, Diane Bona, Chengsong Liu, Cheryl H. Arrowsmith, and Aled M. Edwards PMCID: PMC2324003 Structure–activity relationships in HIV-1 reverse transcriptase revealed by radiation target analysis Nicolas Sluis-Cremer, Ellis Kempner, and Michael A. Parniak PMCID: PMC2324004 Phosphohydrolase and transphosphatidylation reactions of two Streptomyces phospholipase D enzymes: Covalent versus noncovalent catalysis Hongying Yang and Mary F. Roberts PMCID: PMC2324005 For the Record Asymmetric mutation rates at enzyme–inhibitor interfaces: Implications for the protein–protein docking problem James R. Bradford and David R. Westhead PMCID: PMC2324006 Backbone and side–chain heteronuclear resonance assignments and hyperfine NMR shifts in horse cytochrome c Weixia Liu, Jon Rumbley, S. Walter Englander, and A. Joshua Wand PMCID: PMC2324007 Lipid–binding proteins: Structure of the phospholipid ligands Derek Marsh PMCID: PMC2324008 Intrinsic contributions of polar amino acid residues toward thermal stability of an ABC–ATPase of mesophilic origin Jyoti Sarin, Gajendra P.S. Raghava, and Pradip K. Chakraborti PMCID: PMC2324009 Correction CORRECTION Hongyi Zhou and Yaoqi Zhou PMCID: PMC2324010 Corrects: Hongyi Zhou, et al. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction. Protein Sci. 2002 November; 11(11): 2714–2726. |
