| | This journal provides immediate access to some articles. Articles Interaction between the antigen and antibody is controlled by the constant domains: Normal mode dynamics of the HEL–HyHEL-10 complex Masaaki Adachi, Youji Kurihara, Hiroyuki Nojima, Mayuko Takeda-Shitaka, Kenshu Kamiya, and Hideaki Umeyama PMCID: PMC2366927 Structure and disorder in the ribonuclease S-peptide probed by NMR residual dipolar couplings Andrei T. Alexandrescu and Richard A. Kammerer PMCID: PMC2366913 Directed evolution of a bacterial α-amylase: Toward enhanced pH-performance and higher specific activity Cornelius Bessler, Jutta Schmitt, Karl-Heinz Maurer, and Rolf D. Schmid PMCID: PMC2366932 A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary Ryan Day, David A.C. Beck, Roger S. Armen, and Valerie Daggett PMCID: PMC2366924 Molecular dynamics simulation of highly charged proteins: Comparison of the particle-particle particle-mesh and reaction field methods for the calculation of electrostatic interactions Raimundo Gargallo, Philippe H. Hünenberger, Francesc X. Avilés, and Baldomero Oliva PMCID: PMC2366931 Kinetics of the dimerization of retroviral proteases: The “fireman’s grip” and dimerization Marek Ingr, Tat'ána Uhlíková, Kvido St ![[r with breve]](corehtml/pmc/pmcents/x0072x0306.gif) í  ovský, Eva Majerová, and Jan Konvalinka PMCID: PMC2366921 The specificity of cross-reactivity: Promiscuous antibody binding involves specific hydrogen bonds rather than nonspecific hydrophobic stickiness Leo C. James and Dan S. Tawfik PMCID: PMC2366915 A de novo redesign of the WW domain Christina M. Kraemer-Pecore, Juliette T.J. Lecomte, and John R. Desjarlais PMCID: PMC2366923 On the structural and functional modularity of glycinamide ribonucleotide formyltransferases Seung-Goo Lee, Stefan Lutz, and Stephen J. Benkovic PMCID: PMC2366928 Dynamics of Ca2+-saturated calmodulin D129N mutant studied by multiple molecular dynamics simulations Vladimir A. Likić, Emanuel E. Strehler, and Paul R. Gooley PMCID: PMC2366934 Diagnostic chemical shift markers for loop conformation and substrate and cofactor binding in dihydrofolate reductase complexes Michael J. Osborne, Rani P. Venkitakrishnan, H. Jane Dyson, and Peter E. Wright PMCID: PMC2366930 Finding evolutionary relations beyond superfamilies: Fold-based superfamilies Keiko Matsuda, Takaaki Nishioka, Kengo Kinoshita, Takeshi Kawabata, and Nobuhiro Go PMCID: PMC2366925 Staphostatins resemble lipocalins, not cystatins in fold Malgorzata Rzychon, Renata Filipek, Artur Sabat, Klaudia Kosowska, Adam Dubin, Jan Potempa, and Matthias Bochtler PMCID: PMC2366914 The physical basis of microtubule structure and stability David Sept, Nathan A. Baker, and J. Andrew McCammon PMCID: PMC2366909 Profile–profile comparisons by COMPASS predict intricate homologies between protein families Ruslan I. Sadreyev, David Baker, and Nick V. Grishin PMCID: PMC2366929 Amino acid sequence and crystal structure of BaP1, a metalloproteinase from Bothrops asper snake venom that exerts multiple tissue-damaging activities Leandra Watanabe, John D. Shannon, Richard H. Valente, Alexandra Rucavado, Alberto Alape-Girón, Aura S. Kamiguti, R. David G. Theakston, Jay W. Fox, José María Gutiérrez, and Raghuvir K. Arni PMCID: PMC2366908 Isolation and characterization of human nuclear and cytosolic multisynthetase complexes and the intracellular distribution of p43/EMAPII Cindy L. Wolfe, J. Anthony Warrington, Stanitia Davis, Sherrina Green, and Mona T. Norcum PMCID: PMC2366922 Exploring the sequence-structure protein landscape in the glycosyltransferase family Ziding Zhang, Sunil Kochhar, and Martin Grigorov PMCID: PMC2366918 The crystal structure of Escherichia coli heat shock protein YedU reveals three potential catalytic active sites Yonghong Zhao, Deqian Liu, Warna D. Kaluarachchi, Henry D. Bellamy, Mark A. White, and Robert O. Fox PMCID: PMC2366919 Sequence of the lid affects activity and specificity of Candida rugosa lipase isoenzymes Stefania Brocca, Francesco Secundo, Mattia Ossola, Lilia Alberghina, Giacomo Carrea, and Marina Lotti PMCID: PMC2366935 Detection of four oxidation sites in viral prolyl-4-hydroxylase by top-down mass spectrometry Ying Ge, Brian G. Lawhorn, Mariam ElNaggar, Siu Kwan Sze, Tadhg P. Begley, and Fred W. McLafferty PMCID: PMC2366917 Binding-induced folding transitions in calpastatin subdomains A and C Zoltán Mucsi, Ferenc Hudecz, Miklós Hollósi, Peter Tompa, and Peter Friedrich PMCID: PMC2366912 Stabilization of a metastable state of Torpedo californica acetylcholinesterase by chemical chaperones Charles B. Millard, Valery L. Shnyrov, Simon Newstead, Irina Shin, Esther Roth, Israel Silman, and Lev Weiner PMCID: PMC2366936 β Edge strands in protein structure prediction and aggregation Jennifer A. Siepen, Sheena E. Radford, and David R. Westhead PMCID: PMC2366916 LumenP—A neural network predictor for protein localization in the thylakoid lumen Isabelle Westerlund, Gunnar von Heijne, and Olof Emanuelsson PMCID: PMC2366911 Contribution of active site residues to the activity and thermal stability of ribonuclease Sa Gennady I. Yakovlev, Vladimir A. Mitkevich, Kevin L. Shaw, Saul Trevino, Stephanie Newsom, C. Nick Pace, and Alexander A. Makarov PMCID: PMC2366910 For the Record The role of protein stability, solubility, and net charge in amyloid fibril formation Jason P. Schmittschmitt and J. Martin Scholtz PMCID: PMC2366926 Association and dissociation kinetics of colicin E3 and immunity protein 3: Convergence of theory and experiment Huan-Xiang Zhou PMCID: PMC2366933 Correction Protein Sci. 2003 October; 12(10): 2383. PMCID: PMC2366920 Corrects: Tommi Kajander, et al. The structure of Pseudomonas P51 Cl-muconate lactonizing enzyme: Co-evolution of structure and dynamics with the dehalogenation function. Protein Sci. 2003 September; 12(9): 1855–1864. |
