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Volume 7(12);  December 1998
Research Articles
Structural analysis of inhibitor binding to human carbonic anhydrase II.
P. A. Boriack-Sjodin, S. Zeitlin, H. H. Chen, L. Crenshaw, S. Gross, A. Dantanarayana, P. Delgado, J. A. May, T. Dean, and D. W. Christianson
Protein Sci. 1998 December; 7(12): 2483–2489.
PMCID: PMC2143894
Solution structure of barley lipid transfer protein complexed with palmitate. Two different binding modes of palmitate in the homologous maize and barley nonspecific lipid transfer proteins.
M. H. Lerche and F. M. Poulsen
Protein Sci. 1998 December; 7(12): 2490–2498.
PMCID: PMC2143888
A homology identification method that combines protein sequence and structure information.
L. Yu, J. V. White, and T. F. Smith
Protein Sci. 1998 December; 7(12): 2499–2510.
PMCID: PMC2143896
Crystal structure of the effector-binding domain of the trehalose-repressor of Escherichia coli, a member of the LacI family, in its complexes with inducer trehalose-6-phosphate and noninducer trehalose.
U. Hars, R. Horlacher, W. Boos, W. Welte, and K. Diederichs
Protein Sci. 1998 December; 7(12): 2511–2521.
PMCID: PMC2143882
Identification of kinetically hot residues in proteins.
M. C. Demirel, A. R. Atilgan, R. L. Jernigan, B. Erman, and I. Bahar
Protein Sci. 1998 December; 7(12): 2522–2532.
PMCID: PMC2143900
Pulmonary surfactant-associated polypeptide C in a mixed organic solvent transforms from a monomeric alpha-helical state into insoluble beta-sheet aggregates.
T. Szyperski, G. Vandenbussche, T. Curstedt, J. M. Ruysschaert, K. Wüthrich, and J. Johansson
Protein Sci. 1998 December; 7(12): 2533–2540.
PMCID: PMC2143885
The crystal structure of NADPH:ferredoxin reductase from Azotobacter vinelandii.
G. Sridhar Prasad, N. Kresge, A. B. Muhlberg, A. Shaw, Y. S. Jung, B. K. Burgess, and C. D. Stout
Protein Sci. 1998 December; 7(12): 2541–2549.
PMCID: PMC2143901
Dominant role of local dipolar interactions in phosphate binding to a receptor cleft with an electronegative charge surface: equilibrium, kinetic, and crystallographic studies.
P. S. Ledvina, A. L. Tsai, Z. Wang, E. Koehl, and F. A. Quiocho
Protein Sci. 1998 December; 7(12): 2550–2559.
PMCID: PMC2143890
Crystal structure of two quaternary complexes of dethiobiotin synthetase, enzyme-MgADP-AlF3-diaminopelargonic acid and enzyme-MgADP-dethiobiotin-phosphate; implications for catalysis.
H. Käck, J. Sandmark, K. J. Gibson, G. Schneider, and Y. Lindqvist
Protein Sci. 1998 December; 7(12): 2560–2566.
PMCID: PMC2143884
Interaction of wheat alpha-thionin with large unilamellar vesicles.
J. M. Caaveiro, A. Molina, P. Rodríguez-Palenzuela, F. M. Goñi, and J. M. González-Mañas
Protein Sci. 1998 December; 7(12): 2567–2577.
PMCID: PMC2143897
Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions.
O. Keskin, I. Bahar, A. Y. Badretdinov, O. B. Ptitsyn, and R. L. Jernigan
Protein Sci. 1998 December; 7(12): 2578–2586.
PMCID: PMC2143898
Recognition of partially-folded mitochondrial malate dehydrogenase by GroEL. Steady and time-dependent emission anisotropy measurements.
J. E. Churchich
Protein Sci. 1998 December; 7(12): 2587–2594.
PMCID: PMC2143879
Domain structure analysis of elongation factor-3 from Saccharomyces cerevisiae by limited proteolysis and differential scanning calorimetry.
U. S. Ladror, D. A. Egan, S. W. Snyder, J. O. Capobianco, R. C. Goldman, S. A. Dorwin, R. W. Johnson, R. Edalji, A. V. Sarthy, T. McGonigal, K. A. Walter, and T. F. Holzman
Protein Sci. 1998 December; 7(12): 2595–2601.
PMCID: PMC2143895
Localization of basic residues required for receptor binding to the single alpha-helix of the receptor binding domain of human alpha2-macroglobulin.
W. Huang, K. Dolmer, X. Liao, and P. G. Gettins
Protein Sci. 1998 December; 7(12): 2602–2612.
PMCID: PMC2143881
Self-organizing tree-growing network for the classification of protein sequences.
H. C. Wang, J. Dopazo, L. G. de la Fraga, Y. P. Zhu, and J. M. Carazo
Protein Sci. 1998 December; 7(12): 2613–2622.
PMCID: PMC2143887
Probing the ligand binding domain of the GluR2 receptor by proteolysis and deletion mutagenesis defines domain boundaries and yields a crystallizable construct.
G. Q. Chen, Y. Sun, R. Jin, and E. Gouaux
Protein Sci. 1998 December; 7(12): 2623–2630.
PMCID: PMC2143883
Unfolding and refolding of dimeric creatine kinase equilibrium and kinetic studies.
Y. X. Fan, J. M. Zhou, H. Kihara, and C. L. Tsou
Protein Sci. 1998 December; 7(12): 2631–2641.
PMCID: PMC2143886
Effect of denaturant and protein concentrations upon protein refolding and aggregation: a simple lattice model.
P. Gupta, C. K. Hall, and A. C. Voegler
Protein Sci. 1998 December; 7(12): 2642–2652.
PMCID: PMC2143899
Selective and asymmetric action of trypsin on the dimeric forms of seminal RNase.
C. De Lorenzo, F. Dal Piaz, R. Piccoli, A. Di Maro, P. Pucci, and G. D'Alessio
Protein Sci. 1998 December; 7(12): 2653–2658.
PMCID: PMC2143891
Quantum chemical calculations of the reorganization energy of blue-copper proteins.
M. H. Olsson, U. Ryde, and B. O. Roos
Protein Sci. 1998 December; 7(12): 2659–2668.
PMCID: PMC2143893
Solution structure of the His12 --> Cys mutant of the N-terminal zinc binding domain of HIV-1 integrase complexed to cadmium.
M. Cai, Y. Huang, M. Caffrey, R. Zheng, R. Craigie, G. M. Clore, and A. M. Gronenborn
Protein Sci. 1998 December; 7(12): 2669–2674.
PMCID: PMC2143878
Ca2+-dependent conformational changes in bovine GCAP-2.
R. E. Hughes, P. S. Brzovic, A. M. Dizhoor, R. E. Klevit, and J. B. Hurley
Protein Sci. 1998 December; 7(12): 2675–2680.
PMCID: PMC2143880
A solution SAXS study of Borrelia burgdorferi OspA, a protein containing a single-layer beta-sheet.
Z. Bu, S. Koide, and D. M. Engelman
Protein Sci. 1998 December; 7(12): 2681–2683.
PMCID: PMC2143892
Yeast methionine aminopeptidase I can utilize either Zn2+ or Co2+ as a cofactor: a case of mistaken identity?
K. W. Walker and R. A. Bradshaw
Protein Sci. 1998 December; 7(12): 2684–2687.
PMCID: PMC2143902
The trail to superoxide dismutase.
I. Fridovich
Protein Sci. 1998 December; 7(12): 2688–2690.
PMCID: PMC2143889
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