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Volume 7(11);  November 1998
Research Articles
Mapping the lifetimes of local opening events in a native state protein.
B. B. Kragelund, B. Heinemann, J. Knudsen, and F. M. Poulsen
Protein Sci. 1998 November; 7(11): 2237–2248.
PMCID: PMC2143873
A single amino acid substitution makes ERK2 susceptible to pyridinyl imidazole inhibitors of p38 MAP kinase.
T. Fox, J. T. Coll, X. Xie, P. J. Ford, U. A. Germann, M. D. Porter, S. Pazhanisamy, M. A. Fleming, V. Galullo, M. S. Su, and K. P. Wilson
Protein Sci. 1998 November; 7(11): 2249–2255.
PMCID: PMC2143869
Semisynthesis of cytotoxic proteins using a modified protein splicing element.
T. C. Evans, Jr, J. Benner, and M. Q. Xu
Protein Sci. 1998 November; 7(11): 2256–2264.
PMCID: PMC2143866
Solution structure and backbone dynamics of Mason-Pfizer monkey virus (MPMV) nucleocapsid protein.
Y. Gao, K. Kaluarachchi, and D. P. Giedroc
Protein Sci. 1998 November; 7(11): 2265–2280.
PMCID: PMC2143852
Solution structures of stromelysin complexed to thiadiazole inhibitors.
B. J. Stockman, D. J. Waldon, J. A. Gates, T. A. Scahill, D. A. Kloosterman, S. A. Mizsak, E. J. Jacobsen, K. L. Belonga, M. A. Mitchell, B. Mao, J. D. Petke, L. Goodman, E. A. Powers, S. R. Ledbetter, P. S. Kaytes, G. Vogeli, V. P. Marshall, G. L. Petzold, and R. A. Poorman
Protein Sci. 1998 November; 7(11): 2281–2286.
PMCID: PMC2143861
Determinants of strand register in antiparallel beta-sheets of proteins.
E. G. Hutchinson, R. B. Sessions, J. M. Thornton, and D. N. Woolfson
Protein Sci. 1998 November; 7(11): 2287–2300.
PMCID: PMC2143855
Effects of pressure on the structure of metmyoglobin: molecular dynamics predictions for pressure unfolding through a molten globule intermediate.
W. B. Floriano, M. A. Nascimento, G. B. Domont, and W. A. Goddard, 3rd
Protein Sci. 1998 November; 7(11): 2301–2313.
PMCID: PMC2143858
Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV.
J. Kervinen, J. Lubkowski, A. Zdanov, D. Bhatt, B. M. Dunn, K. Y. Hui, D. J. Powell, J. Kay, A. Wlodawer, and A. Gustchina
Protein Sci. 1998 November; 7(11): 2314–2323.
PMCID: PMC2143868
Singular points of protein beta-sheets.
W. M. Liu and K. C. Chou
Protein Sci. 1998 November; 7(11): 2324–2330.
PMCID: PMC2143876
The equilibrium unfolding of Azotobacter vinelandii apoflavodoxin II occurs via a relatively stable folding intermediate.
C. P. van Mierlo, W. M. van Dongen, F. Vergeldt, W. J. van Berkel, and E. Steensma
Protein Sci. 1998 November; 7(11): 2331–2344.
PMCID: PMC2143863
Stabilizing the subtilisin BPN' pro-domain by phage display selection: how restrictive is the amino acid code for maximum protein stability?
B. Ruan, J. Hoskins, L. Wang, and P. N. Bryan
Protein Sci. 1998 November; 7(11): 2345–2353.
PMCID: PMC2143871
Role of the electrostatic loop charged residues in Cu,Zn superoxide dismutase.
F. Polticelli, A. Battistoni, P. O'Neill, G. Rotilio, and A. Desideri
Protein Sci. 1998 November; 7(11): 2354–2358.
PMCID: PMC2143875
pH-induced conformational changes of membrane-bound influenza hemagglutinin and its effect on target lipid bilayers.
C. Gray and L. K. Tamm
Protein Sci. 1998 November; 7(11): 2359–2373.
PMCID: PMC2143864
Addition of side-chain interactions to 3(10)-helix/coil and alpha-helix/3(10)-helix/coil theory.
J. K. Sun and A. J. Doig
Protein Sci. 1998 November; 7(11): 2374–2383.
PMCID: PMC2143862
The interaction between the chaperone SecB and its ligands: evidence for multiple subsites for binding.
L. L. Randall, S. J. Hardy, T. B. Topping, V. F. Smith, J. E. Bruce, and R. D. Smith
Protein Sci. 1998 November; 7(11): 2384–2390.
PMCID: PMC2143860
Identification of tryptophan oxidation products in bovine alpha-crystallin.
E. L. Finley, J. Dillon, R. K. Crouch, and K. L. Schey
Protein Sci. 1998 November; 7(11): 2391–2397.
PMCID: PMC2143850
Monitoring metal ion flux in reactions of metallothionein and drug-modified metallothionein by electrospray mass spectrometry.
J. Zaia, D. Fabris, D. Wei, R. L. Karpel, and C. Fenselau
Protein Sci. 1998 November; 7(11): 2398–2404.
PMCID: PMC2143854
Global analysis of the thermal and chemical denaturation of the N-terminal domain of the ribosomal protein L9 in H2O and D2O. Determination of the thermodynamic parameters, deltaH(o), deltaS(o), and deltaC(o)p and evaluation of solvent isotope effects.
B. Kuhlman and D. P. Raleigh
Protein Sci. 1998 November; 7(11): 2405–2412.
PMCID: PMC2143857
Prediction by a neural network of outer membrane beta-strand protein topology.
K. Diederichs, J. Freigang, S. Umhau, K. Zeth, and J. Breed
Protein Sci. 1998 November; 7(11): 2413–2420.
PMCID: PMC2143870
Sequential assignment of 1H, 15N, 13C resonances and secondary structure of human calmodulin-like protein determined by NMR spectroscopy.
H. Qian, M. S. Rogers, J. Schleucher, U. Edlund, E. E. Strehler, and I. Sethson
Protein Sci. 1998 November; 7(11): 2421–2430.
PMCID: PMC2143872
Surface salt bridges stabilize the GCN4 leucine zipper.
E. J. Spek, A. H. Bui, M. Lu, and N. R. Kallenbach
Protein Sci. 1998 November; 7(11): 2431–2437.
PMCID: PMC2143877
The orientation and dynamics of substance P in lipid environments.
D. A. Keire and M. Kobayashi
Protein Sci. 1998 November; 7(11): 2438–2450.
PMCID: PMC2143867
The kinetic cycle of cardiac troponin C: calcium binding and dissociation at site II trigger slow conformational rearrangements.
A. L. Hazard, S. C. Kohout, N. L. Stricker, J. A. Putkey, and J. J. Falke
Protein Sci. 1998 November; 7(11): 2451–2459.
PMCID: PMC2143865
Proteolysis as a measure of the free energy difference between cytochrome c and its derivatives.
L. Wang and N. R. Kallenbach
Protein Sci. 1998 November; 7(11): 2460–2464.
PMCID: PMC2143853
Evidence that peroxiredoxins are novel members of the thioredoxin fold superfamily.
E. Schröder and C. P. Ponting
Protein Sci. 1998 November; 7(11): 2465–2468.
PMCID: PMC2143874
HOMSTRAD: a database of protein structure alignments for homologous families.
K. Mizuguchi, C. M. Deane, T. L. Blundell, and J. P. Overington
Protein Sci. 1998 November; 7(11): 2469–2471.
PMCID: PMC2143859
Cation-pi (Na+-Trp) interactions in the crystal structure of tetragonal lysozyme.
J. Wouters
Protein Sci. 1998 November; 7(11): 2472–2475.
PMCID: PMC2143856
The identification of metal-binding ligand residues in metalloproteins using nuclear magnetic resonance spectroscopy.
S. D. Scrofani, P. E. Wright, and H. J. Dyson
Protein Sci. 1998 November; 7(11): 2476–2479.
PMCID: PMC2143851
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